MC06g2109 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g2109
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionF-box/LRR-repeat protein
LocationMC06: 28583103 .. 28583348 (+)
RNA-Seq ExpressionMC06g2109
SyntenyMC06g2109
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAAAAACCCCACTCCTCCCTCTCTCTTCTTCTTCCTCCTCCTCCTCACAATTCTCCTCGCCGCCACCCCTCTCTCCGCCTCCCGCCGCCTCTCCACCGCCGCCGCCGGTAAGGATTCCCACCGTCCGCATTACTCCACGGAGCCGCCGCTCGCCGTGGAAGACAACACCACGCCTCAAAGTCAAAACTACGCCGTTTCGCTCCGCAAAGTCCCGGCCGGTCCGAACCCACTACATAAC

mRNA sequence

ATGGCTTCCAAAAACCCCACTCCTCCCTCTCTCTTCTTCTTCCTCCTCCTCCTCACAATTCTCCTCGCCGCCACCCCTCTCTCCGCCTCCCGCCGCCTCTCCACCGCCGCCGCCGGTAAGGATTCCCACCGTCCGCATTACTCCACGGAGCCGCCGCTCGCCGTGGAAGACAACACCACGCCTCAAAGTCAAAACTACGCCGTTTCGCTCCGCAAAGTCCCGGCCGGTCCGAACCCACTACATAAC

Coding sequence (CDS)

ATGGCTTCCAAAAACCCCACTCCTCCCTCTCTCTTCTTCTTCCTCCTCCTCCTCACAATTCTCCTCGCCGCCACCCCTCTCTCCGCCTCCCGCCGCCTCTCCACCGCCGCCGCCGGTAAGGATTCCCACCGTCCGCATTACTCCACGGAGCCGCCGCTCGCCGTGGAAGACAACACCACGCCTCAAAGTCAAAACTACGCCGTTTCGCTCCGCAAAGTCCCGGCCGGTCCGAACCCACTACATAAC

Protein sequence

MASKNPTPPSLFFFLLLLTILLAATPLSASRRLSTAAAGKDSHRPHYSTEPPLAVEDNTTPQSQNYAVSLRKVPAGPNPLHN
Homology
BLAST of MC06g2109 vs. NCBI nr
Match: KAA0042782.1 (F-box/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 2.81e-18
Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = 0

Query: 1  MASKNPTPPSLFFFLLLLTILLAATPLSASRRLSTAAAG--KDSHRPHYST-----EPPL 60
          MAS+N TPPSLF FL +  ILL  TPL A+RRL  +A     DS RP  +T     +PP 
Sbjct: 1  MASQNSTPPSLFLFLFI--ILLTTTPLHAARRLPASAPQPENDSLRPPTTTTFSFAQPPA 60

Query: 61 AVEDNTTPQSQNYAVSLRKVPAGPNPLHN 82
          AV+D  T  S+NY VSLRKVPAGPNPLHN
Sbjct: 61 AVDDQIT--SRNYGVSLRKVPAGPNPLHN 85

BLAST of MC06g2109 vs. NCBI nr
Match: KGN50125.1 (hypothetical protein Csa_000058 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 2.42e-15
Identity = 46/91 (50.55%), Postives = 56/91 (61.54%), Query Frame = 0

Query: 1  MASKNPTPPSLFFFLLLLTILLAATPLSASRRLSTAAAGKDS-----HRPHYST----EP 60
          MAS+N  PP+  F  L + +L   TPL A+RR  T+A   ++     H P  ST    +P
Sbjct: 1  MASQNSIPPNSLFLFLFMILLTTTTPLHAARRPPTSAPQPENDSLSLHPPTTSTFSFTQP 60

Query: 61 PLAVEDNTTPQSQNYAVSLRKVPAGPNPLHN 82
          P AVED  T  S+NY VSLRKVPAGPNPLHN
Sbjct: 61 PAAVEDQIT--SRNYGVSLRKVPAGPNPLHN 89

BLAST of MC06g2109 vs. NCBI nr
Match: KAG6579492.1 (hypothetical protein SDJN03_23940, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 3.28e-12
Identity = 48/89 (53.93%), Postives = 55/89 (61.80%), Query Frame = 0

Query: 1  MASKNP-TPPSLFFFLLLLTILLAATPLSASRRLSTAAAG--KDSHRPHYST----EPPL 60
          MAS+NP T   LF F++LLT      PLSA RRLSTA      DS  P  ++    +PP 
Sbjct: 1  MASQNPITSLCLFLFIILLT---TTAPLSAGRRLSTAEQHPENDSLPPPTTSFSFIQPPT 60

Query: 61 AVEDNTTPQSQNYAVSLRKVPAGPNPLHN 82
           VE+     SQNYAVS RKVPAGPNPLHN
Sbjct: 61 TVENQAA--SQNYAVSHRKVPAGPNPLHN 84

BLAST of MC06g2109 vs. NCBI nr
Match: KAG4184591.1 (hypothetical protein ERO13_A09G180600v2 [Gossypium hirsutum])

HSP 1 Score: 47.0 bits (110), Expect = 1.53e-04
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 9  PSLFFFLLLLTILLAATPLSASRRLSTAA--AGKDSHRPHYSTEPPLAVEDNTTPQSQNY 68
          PS F  LL+L ++LA   LS+ R+L+ A+    K S   H+S+    +V  N+   +  +
Sbjct: 4  PSPFLLLLILAVMLATVHLSSCRQLTWASYQQTKFSFAHHFSSSYYASVSGNSNKYTAAH 63

Query: 69 AVSLRKVPAGPNPLHN 82
           VS + VP GPNPLHN
Sbjct: 64 DVSHKVVPGGPNPLHN 79

BLAST of MC06g2109 vs. NCBI nr
Match: KAB2066894.1 (hypothetical protein ES319_A09G189700v1 [Gossypium barbadense] >TYH03359.1 hypothetical protein ES288_A09G213200v1 [Gossypium darwinii] >TYI11466.1 hypothetical protein ES332_A09G209100v1 [Gossypium tomentosum] >TYJ19457.1 hypothetical protein E1A91_A09G192200v1 [Gossypium mustelinum])

HSP 1 Score: 45.4 bits (106), Expect = 6.12e-04
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 9  PSLFFFLLLLTILLAATPLSASRRLSTAA--AGKDSHRPHYSTEPPLAVEDNTTPQSQNY 68
          PS F  LL+L ++LA   LS+ R+L+ A+    K S   H+S+    +V  N+   +  +
Sbjct: 4  PSPFLPLLILAVMLATVHLSSCRQLTWASYQQTKFSFAHHFSSSYYASVSGNSNKYTAAH 63

Query: 69 AVSLRKVPAGPNPLHN 82
           VS + VP GPNPLHN
Sbjct: 64 DVSHKVVPGGPNPLHN 79

BLAST of MC06g2109 vs. ExPASy TrEMBL
Match: A0A5A7THA6 (F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002830 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.36e-18
Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = 0

Query: 1  MASKNPTPPSLFFFLLLLTILLAATPLSASRRLSTAAAG--KDSHRPHYST-----EPPL 60
          MAS+N TPPSLF FL +  ILL  TPL A+RRL  +A     DS RP  +T     +PP 
Sbjct: 1  MASQNSTPPSLFLFLFI--ILLTTTPLHAARRLPASAPQPENDSLRPPTTTTFSFAQPPA 60

Query: 61 AVEDNTTPQSQNYAVSLRKVPAGPNPLHN 82
          AV+D  T  S+NY VSLRKVPAGPNPLHN
Sbjct: 61 AVDDQIT--SRNYGVSLRKVPAGPNPLHN 85

BLAST of MC06g2109 vs. ExPASy TrEMBL
Match: A0A0A0KKA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154870 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.17e-15
Identity = 46/91 (50.55%), Postives = 56/91 (61.54%), Query Frame = 0

Query: 1  MASKNPTPPSLFFFLLLLTILLAATPLSASRRLSTAAAGKDS-----HRPHYST----EP 60
          MAS+N  PP+  F  L + +L   TPL A+RR  T+A   ++     H P  ST    +P
Sbjct: 1  MASQNSIPPNSLFLFLFMILLTTTTPLHAARRPPTSAPQPENDSLSLHPPTTSTFSFTQP 60

Query: 61 PLAVEDNTTPQSQNYAVSLRKVPAGPNPLHN 82
          P AVED  T  S+NY VSLRKVPAGPNPLHN
Sbjct: 61 PAAVEDQIT--SRNYGVSLRKVPAGPNPLHN 89

BLAST of MC06g2109 vs. ExPASy TrEMBL
Match: A0A2P2QBS8 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.22e-04
Identity = 34/86 (39.53%), Postives = 43/86 (50.00%), Query Frame = 0

Query: 8  PPSLFFFLLLLTILLAATPLSASRRLSTAAAGKDSHRP-----------HYSTEPPLAVE 67
          P S F FL+ L ILLA + LS+ R L  +  G++S  P           H+S + P    
Sbjct: 4  PNSTFLFLVFL-ILLAGSQLSSCRHLHESTRGRNSGHPVENQSSTQFSWHFSAKAPEG-- 63

Query: 68 DNTTPQSQNYAVSLRKVPAGPNPLHN 82
           N    +  Y  S R VPAGPNPLHN
Sbjct: 64 SNRVEGNPVYGASYRTVPAGPNPLHN 86

BLAST of MC06g2109 vs. ExPASy TrEMBL
Match: A0A5D2P6R7 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A09G209100v1 PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.96e-04
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 9  PSLFFFLLLLTILLAATPLSASRRLSTAA--AGKDSHRPHYSTEPPLAVEDNTTPQSQNY 68
          PS F  LL+L ++LA   LS+ R+L+ A+    K S   H+S+    +V  N+   +  +
Sbjct: 4  PSPFLPLLILAVMLATVHLSSCRQLTWASYQQTKFSFAHHFSSSYYASVSGNSNKYTAAH 63

Query: 69 AVSLRKVPAGPNPLHN 82
           VS + VP GPNPLHN
Sbjct: 64 DVSHKVVPGGPNPLHN 79

BLAST of MC06g2109 vs. ExPASy TrEMBL
Match: A0A5J5UHJ6 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G189700v1 PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.96e-04
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 9  PSLFFFLLLLTILLAATPLSASRRLSTAA--AGKDSHRPHYSTEPPLAVEDNTTPQSQNY 68
          PS F  LL+L ++LA   LS+ R+L+ A+    K S   H+S+    +V  N+   +  +
Sbjct: 4  PSPFLPLLILAVMLATVHLSSCRQLTWASYQQTKFSFAHHFSSSYYASVSGNSNKYTAAH 63

Query: 69 AVSLRKVPAGPNPLHN 82
           VS + VP GPNPLHN
Sbjct: 64 DVSHKVVPGGPNPLHN 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0042782.12.81e-1858.43F-box/LRR-repeat protein [Cucumis melo var. makuwa][more]
KGN50125.12.42e-1550.55hypothetical protein Csa_000058 [Cucumis sativus][more]
KAG6579492.13.28e-1253.93hypothetical protein SDJN03_23940, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG4184591.11.53e-0439.47hypothetical protein ERO13_A09G180600v2 [Gossypium hirsutum][more]
KAB2066894.16.12e-0439.47hypothetical protein ES319_A09G189700v1 [Gossypium barbadense] >TYH03359.1 hypot... [more]
Match NameE-valueIdentityDescription
A0A5A7THA61.36e-1858.43F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A0A0KKA91.17e-1550.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154870 PE=4 SV=1[more]
A0A2P2QBS81.22e-0439.53Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A5D2P6R72.96e-0439.47Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A09G209100v1 P... [more]
A0A5J5UHJ62.96e-0439.47Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G189700v1 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g2109.1MC06g2109.1mRNA