MC06g2088 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g2088
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RING-type E3 ubiquitin transferase
Location	MC06: 28405430 .. 28407367 (-)
RNA-Seq Expression	MC06g2088
Synteny	MC06g2088

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGCGTCAAGATTAGTACATTTATTTCTCTTTGCAAAATAGTATACATTTATTTGTCAATTATTATTAATACCAAAATTCGATTATACAACTCTTGCCGCCTGAAGTAAAATTGCTATATAAATTACTCTGCTCTCGTCCCTCATAATAAGGTGCCACGTAAGAGAGAATGGGGGCAGTTAAATCAGGAAATCGAGAAAAAGAAAAAATATATATTTATTATATAGTCTCTCTCTCTCTCTCTCTCTCATCTTCTGCAATCACTGAATTCCTCTGCTTAGGAACTGAAGAGAGAGAGAGAGAGAGAAAATGCGACCAACTCCGTTAGATGCCGACGACACCGTCCGCTTCCACGCGCCGCCTCCACCGCCGTGCCACGACTTCCGCGCGTGTTCTTGGCGGCCGTACTCCAATTCCAAGGATTTCGAAGCTAACGCCGCCGTCGTCGTCATCATTCTCCTCTGCGGCCTCATCTGCGCCCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGCCGCGACGGCCGCCGTGATGATCCGTCCGACGGTAATGGTCTTTCTCAAGCCGGCCAGCAGCAGGAACTTCGCGACGAGCCGAAGCCGATTTTACTGGACACATTGAAGATGGCTCCGGCGCTGGTTTTTTCGGCGGAGATGAAGCCGAAGCTCGCCGGAGCGGAGGCGGAGTGTACGATTTGCTTGACGGAGTTCTCGGAGGGGGAAGAGATTCGAGTATTGTCGATTTGTAAGCACGGATTTCACGTGCAGTGCATTCAAACGTGGTTAATTTTGCATTCTTCTTGTCCGACTTGCCGCCGGAGCTACCTTCCTCCCTCGCCGTCGTCCTCCGAGCACAGCGGCGACGGCGACGGCGACGGCAACCACTGCCCCTGAGATTAAATTTGAAATACCCAAATTTCTCCCGGTAGTCGCCGTCGTAGCTGTCTAGCAGCAGTTCGAATTGAGCGTTTGCTTTTTTTTATTGCAATTGCTTCATCTGTTTTTGCTCTCGAATTTTCCGATCAATTTTCCGAAAGCTCGTTAATTAATTAAATTCGGAGTTAAGAAACGAGGTTAAAATAGAAATTTACCTCTATTTAGTATCTAAAATTTAAAAATGTTTTTAATTTTTTTTTCCTTTCTTTTGGAAGAAGTTTTGAACCCCAATTTCTACCCGTGACACGAATTATGTCATTCTTTTTTTTTTTTAGAATTATTATGTCAATTTCATGTCTATGATATGATATGTCACTATCGTCATTGATGATAGAGTTTAAGATAAACTTAAAATTAAAGGCTTAATGATAAAACTTATAACAAAAAGGAAAAACCATCTTCGAGTTTATGATGAGTTGGATTGGTGAGAGAAAAAATGGTCGATATGGTTCGATATAGGAGATTTTCTTTTTATTTCTTTTCTTTTTAATTGAGTTTTACACCTTAGTTAGGTTAGAATAGCTCATGTTACAATTTAACATGAACTGTACATCCTCAACTTAAAAAAATGTTTAATGATTTTGAATTTAACATCGTCCTCCATTTAAAAAAAATATTTAATAGATTTTTAAATTATAAAAGTTTATAACTTTAATAAATTTCTAATAGAATTTGAATGATATATTTTTTTAATTACATATATATATATATTTTTTTTTAATACAACATATTGGAAGGGGATTCGAACTCACAACTTCTTAGTTGGAGGTATATGCTAGTTATCACTGGACTATCTTGGTTTTGGCTTTAGTTTATATATTTATTATTGTATACACGATTGAAAATTTTGAGTCTTATCAAATGCATATTTATTAACACAAATGCTGTGGTGACTAAACTCTAATAACCTTGATATTGAAGTATTTTCCGATCGGATTTTGAGAATCCATATGGAAAAAATAAAAAATTTATTTCTTTAACGAAGCCAAAAATTGAGTTGAG

mRNA sequence

TCCGCGTCAAGATTAGTACATTTATTTCTCTTTGCAAAATAGTATACATTTATTTGTCAATTATTATTAATACCAAAATTCGATTATACAACTCTTGCCGCCTGAAGTAAAATTGCTATATAAATTACTCTGCTCTCGTCCCTCATAATAAGGTGCCACGTAAGAGAGAATGGGGGCAGTTAAATCAGGAAATCGAGAAAAAGAAAAAATATATATTTATTATATAGTCTCTCTCTCTCTCTCTCTCTCATCTTCTGCAATCACTGAATTCCTCTGCTTAGGAACTGAAGAGAGAGAGAGAGAGAGAAAATGCGACCAACTCCGTTAGATGCCGACGACACCGTCCGCTTCCACGCGCCGCCTCCACCGCCGTGCCACGACTTCCGCGCGTGTTCTTGGCGGCCGTACTCCAATTCCAAGGATTTCGAAGCTAACGCCGCCGTCGTCGTCATCATTCTCCTCTGCGGCCTCATCTGCGCCCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGCCGCGACGGCCGCCGTGATGATCCGTCCGACGGTAATGGTCTTTCTCAAGCCGGCCAGCAGCAGGAACTTCGCGACGAGCCGAAGCCGATTTTACTGGACACATTGAAGATGGCTCCGGCGCTGGTTTTTTCGGCGGAGATGAAGCCGAAGCTCGCCGGAGCGGAGGCGGAGTGTACGATTTGCTTGACGGAGTTCTCGGAGGGGGAAGAGATTCGAGTATTGTCGATTTGTAAGCACGGATTTCACGTGCAGTGCATTCAAACGTGGTTAATTTTGCATTCTTCTTGTCCGACTTGCCGCCGGAGCTACCTTCCTCCCTCGCCGTCGTCCTCCGAGCACAGCGGCGACGGCGACGGCGACGGCAACCACTGCCCCTGAGATTAAATTTGAAATACCCAAATTTCTCCCGGTAGTCGCCGTCGTAGCTGTCTAGCAGCAGTTCGAATTGAGCGTTTGCTTTTTTTTATTGCAATTGCTTCATCTGTTTTTGCTCTCGAATTTTCCGATCAATTTTCCGAAAGCTCGTTAATTAATTAAATTCGGAGTTAAGAAACGAGGTTAAAATAGAAATTTACCTCTATTTAGTATCTAAAATTTAAAAATGTTTTTAATTTTTTTTTCCTTTCTTTTGGAAGAAGTTTTGAACCCCAATTTCTACCCGTGACACGAATTATGTCATTCTTTTTTTTTTTTAGAATTATTATGTCAATTTCATGTCTATGATATGATATGTCACTATCGTCATTGATGATAGAGTTTAAGATAAACTTAAAATTAAAGGCTTAATGATAAAACTTATAACAAAAAGGAAAAACCATCTTCGAGTTTATGATGAGTTGGATTGGTGAGAGAAAAAATGGTCGATATGGTTCGATATAGGAGATTTTCTTTTTATTTCTTTTCTTTTTAATTGAGTTTTACACCTTAGTTAGGTTAGAATAGCTCATGTTACAATTTAACATGAACTGTACATCCTCAACTTAAAAAAATGTTTAATGATTTTGAATTTAACATCGTCCTCCATTTAAAAAAAATATTTAATAGATTTTTAAATTATAAAAGTTTATAACTTTAATAAATTTCTAATAGAATTTGAATGATATATTTTTTTAATTACATATATATATATATTTTTTTTTAATACAACATATTGGAAGGGGATTCGAACTCACAACTTCTTAGTTGGAGGTATATGCTAGTTATCACTGGACTATCTTGGTTTTGGCTTTAGTTTATATATTTATTATTGTATACACGATTGAAAATTTTGAGTCTTATCAAATGCATATTTATTAACACAAATGCTGTGGTGACTAAACTCTAATAACCTTGATATTGAAGTATTTTCCGATCGGATTTTGAGAATCCATATGGAAAAAATAAAAAATTTATTTCTTTAACGAAGCCAAAAATTGAGTTGAG

Coding sequence (CDS)

ATGCGACCAACTCCGTTAGATGCCGACGACACCGTCCGCTTCCACGCGCCGCCTCCACCGCCGTGCCACGACTTCCGCGCGTGTTCTTGGCGGCCGTACTCCAATTCCAAGGATTTCGAAGCTAACGCCGCCGTCGTCGTCATCATTCTCCTCTGCGGCCTCATCTGCGCCCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGCCGCGACGGCCGCCGTGATGATCCGTCCGACGGTAATGGTCTTTCTCAAGCCGGCCAGCAGCAGGAACTTCGCGACGAGCCGAAGCCGATTTTACTGGACACATTGAAGATGGCTCCGGCGCTGGTTTTTTCGGCGGAGATGAAGCCGAAGCTCGCCGGAGCGGAGGCGGAGTGTACGATTTGCTTGACGGAGTTCTCGGAGGGGGAAGAGATTCGAGTATTGTCGATTTGTAAGCACGGATTTCACGTGCAGTGCATTCAAACGTGGTTAATTTTGCATTCTTCTTGTCCGACTTGCCGCCGGAGCTACCTTCCTCCCTCGCCGTCGTCCTCCGAGCACAGCGGCGACGGCGACGGCGACGGCAACCACTGCCCCTGA

Protein sequence

MRPTPLDADDTVRFHAPPPPPCHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALALNTAIRCFLRRDGRRDDPSDGNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSEHSGDGDGDGNHCP

Homology

[Close]

BLAST of MC06g2088 vs. ExPASy Swiss-Prot
Match: Q9FGJ6 (RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.1e-31
Identity = 75/164 (45.73%), Postives = 101/164 (61.59%), Query Frame = 0


Query: 20  PPCHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALALNTAIRCFLRRDGRRDDPSD 79
           P C+    C W+PYSNS DF ANA+V++I+++  LICAL+L  AIRCFLR     +D   
Sbjct: 18  PTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETED--- 77

Query: 80  GNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEE 139
                      + + +P+     T    P LV+S+++  +LAGAEAEC ICL+EF +GE 
Sbjct: 78  -----------DHKPDPEAAASST-PTTPTLVYSSDL--ELAGAEAECAICLSEFEQGES 137

Query: 140 IRVLSICKHGFHVQCIQTWLILHSSCPTCRRS-YLPPSPSSSEH 183
           I+VL  C+HGFHV+CI  WL   SSCPTCR S +   S + S H
Sbjct: 138 IQVLEKCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSH 163

[Close]

BLAST of MC06g2088 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-23
Identity = 64/155 (41.29%), Postives = 85/155 (54.84%), Query Frame = 0


Query: 35  NSKDFEANAAVVVIILLCGLICALALNTAIRCFLRRDGR---RDDPSDGNGLSQAGQQQE 94
           N    + +  +++  LLC LICAL +N+ +RC LR   R    +DP D N          
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNA--------- 92

Query: 95  LRDEPKPILLDTLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLSICKHGFH 154
             +  K I    LK+ P   +S E+K K      EC ICL +F EGE +RVL  C HGFH
Sbjct: 93  --NVAKGIKKRALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFH 152

Query: 155 VQCIQTWLILHSSCPTCRRSYLP-PSPSSSEHSGD 186
           V+CI TWL+ HSSCPTCR+S L   +P++    GD
Sbjct: 153 VKCIDTWLLSHSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]

BLAST of MC06g2088 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-22
Identity = 58/144 (40.28%), Postives = 78/144 (54.17%), Query Frame = 0


Query: 35  NSKDFEANAAVVVIILLCGLICALALNTAIRCFLRRDGRRDDPSDGNGLSQAGQQQELRD 94
           N   F+ N  +++  LLC LICAL+LN+A+RC LR   R       +  S A        
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 95  EPKPILLDTLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLSICKHGFHVQC 154
               +    LK  P  ++ + +    A    EC ICL +F +GE++RVL  C HGFHV+C
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKA---TECLICLGDFEDGEKVRVLPKCNHGFHVRC 144

Query: 155 IQTWLILHSSCPTCRRSYLPPSPS 179
           I TWL+  SSCPTCR+S L   PS
Sbjct: 145 IDTWLLSRSSCPTCRQSLLLEQPS 165

[Close]

BLAST of MC06g2088 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-21
Identity = 56/138 (40.58%), Postives = 76/138 (55.07%), Query Frame = 0


Query: 32  PYSNSKDFEANAAVVVIILLCGLICALALNTAIRCFLRRDGRRDDPSDGNGLSQAGQQQE 91
           PY    +F+AN  +V+ +LLC L+C+L LN+ IRC LR       PS+       G    
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNL--VPSEA-----GGDNYP 104

Query: 92  LRDEPKPILLDTLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLSICKHGFH 151
           +R     +    LK    + +S E+   L G + EC ICL+EF   E +++L  C HGFH
Sbjct: 105 VRLTNTGVKRKALKSFQTVSYSTEL--NLPGLDTECAICLSEFVAEERVKLLPTCHHGFH 164

Query: 152 VQCIQTWLILHSSCPTCR 170
           V+CI  WL  HSSCPTCR
Sbjct: 165 VRCIDKWLSSHSSCPTCR 173

[Close]

BLAST of MC06g2088 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.5e-21
Identity = 58/149 (38.93%), Postives = 78/149 (52.35%), Query Frame = 0


Query: 33  YSNSKDFEANAAVVVIILLCGLICALALNTAIRCFLRRDGRRDDPSDGNGLSQAGQQQEL 92
           Y+   +F+AN  +++  LLC LI AL LN+ +RC +R          G GLS +     +
Sbjct: 24  YTRDMNFDANMVIILAALLCALILALGLNSILRCAMR---------CGFGLSSSAAAGTV 83

Query: 93  RDEPKPILLDTLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLSICKHGFHV 152
            D       +  K   A   S E+K     A  EC ICL EF++GE +RVL  C H FH+
Sbjct: 84  ADRAGLKKRELKKFPVAEYGSGEVKI----AATECAICLGEFADGERVRVLPPCNHSFHM 143

Query: 153 QCIQTWLILHSSCPTCRRSYLPPSPSSSE 182
            CI TWL+ HSSCP CR S +    + SE
Sbjct: 144 SCIDTWLVSHSSCPNCRHSLIEVHVAGSE 159

[Close]

BLAST of MC06g2088 vs. NCBI nr
Match: XP_022159530.1 (RING-H2 finger protein ATL79-like [Momordica charantia])

HSP 1 Score: 401 bits (1030), Expect = 4.34e-141
Identity = 194/196 (98.98%), Postives = 194/196 (98.98%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFHAPPPPPCHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDTVRFHAPPPPPCHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFHAPPPPPCHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRDGRRDDPSDGNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKPKL 120
           NTAIRCFLRRDGRRDDPSDGNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKPKL
Sbjct: 61  NTAIRCFLRRDGRRDDPSDGNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKPKL 120

Query: 121 AGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSS 180
           AGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSS
Sbjct: 121 AGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSS 180

Query: 181 EHSGDGDGDG--NHCP 194
           EHSGDGDGDG  NHCP
Sbjct: 181 EHSGDGDGDGDGNHCP 196

[Close]

BLAST of MC06g2088 vs. NCBI nr
Match: KAG7017072.1 (RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 317 bits (811), Expect = 7.70e-108
Identity = 159/192 (82.81%), Postives = 169/192 (88.02%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFHAPPPPP-CHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALA 60
           MRPTPLDADDTV F  PPPPP CHD RAC+WRPYSNS+DFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRDGRRDD-PSDGNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKP 120
           LNTAIRCFLRR G  D+ PSD        +Q+ELRDE KP L+D LKMAPALVFSAE+KP
Sbjct: 61  LNTAIRCFLRRRGDADENPSDT-------RQEELRDETKPTLVDKLKMAPALVFSAEIKP 120

Query: 121 KLAGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPS 180
           KLAGAEAECTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPS
Sbjct: 121 KLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPS 180

Query: 181 SSEHSGDGDGDG 190
           S+ H GDGDGDG
Sbjct: 181 SAAHGGDGDGDG 185

[Close]

BLAST of MC06g2088 vs. NCBI nr
Match: XP_022928967.1 (RING-H2 finger protein ATL79-like [Cucurbita moschata] >KAG6579615.1 RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 315 bits (806), Expect = 4.15e-107
Identity = 158/191 (82.72%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFHAPPPPP-CHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALA 60
           MRPTPLDADDTV F  PPPPP CHD RAC+WRPYSNS+DFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRDGRRDD-PSDGNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKP 120
           LNTAIRCFLRR G  D+ PSD        +Q+ELRDE KP L+D LKMAPALVFSAE+KP
Sbjct: 61  LNTAIRCFLRRRGDADENPSDT-------RQEELRDETKPTLVDKLKMAPALVFSAEIKP 120

Query: 121 KLAGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPS 180
           KLAGAEAECTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPS
Sbjct: 121 KLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPS 180

Query: 181 SSEHSGDGDGD 189
           S+ H GDGDGD
Sbjct: 181 SAAHGGDGDGD 184

[Close]

BLAST of MC06g2088 vs. NCBI nr
Match: XP_038875287.1 (RING-H2 finger protein ATL79-like [Benincasa hispida])

HSP 1 Score: 312 bits (799), Expect = 4.67e-106
Identity = 156/189 (82.54%), Postives = 163/189 (86.24%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFHAPPPPPCHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDTV F  PP PPCHD RAC+WRPYSNS+DFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVAFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRDGRRDD-PSDGNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKPK 120
           NTAIRCFLRR G  DD PSD        +Q+EL+DE KP L+D LKMAPALVFSAE KPK
Sbjct: 61  NTAIRCFLRRRGSADDDPSDS-------RQEELQDETKPTLVDKLKMAPALVFSAETKPK 120

Query: 121 LAGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSS 180
           LAGAEAECTICLTEF EGEEIRVL+ICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSP S
Sbjct: 121 LAGAEAECTICLTEFLEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPPS 180

Query: 181 SEHSGDGDG 188
           S   GDGDG
Sbjct: 181 SVSGGDGDG 182

[Close]

BLAST of MC06g2088 vs. NCBI nr
Match: XP_004145965.1 (RING-H2 finger protein ATL79 [Cucumis sativus] >KGN49952.1 hypothetical protein Csa_000591 [Cucumis sativus])

HSP 1 Score: 311 bits (798), Expect = 6.19e-106
Identity = 154/186 (82.80%), Postives = 162/186 (87.10%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFHAPPPPPCHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDTVRF  PP PPCHD RAC+WRPYS+S+DFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRDGRRDDPSDGNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKPKL 120
           NTAIRCFLRR G  DD S  +      +Q+EL +E KP L+D LKMAPALVFSAEMKPKL
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDS------RQEELPEETKPTLMDKLKMAPALVFSAEMKPKL 120

Query: 121 AGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSS 180
           AGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS
Sbjct: 121 AGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSS 180

Query: 181 EHSGDG 186
              GDG
Sbjct: 181 ASGGDG 180

[Close]

BLAST of MC06g2088 vs. ExPASy TrEMBL
Match: A0A6J1DZ01 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111025919 PE=3 SV=1)

HSP 1 Score: 401 bits (1030), Expect = 2.10e-141
Identity = 194/196 (98.98%), Postives = 194/196 (98.98%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFHAPPPPPCHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDTVRFHAPPPPPCHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFHAPPPPPCHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRDGRRDDPSDGNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKPKL 120
           NTAIRCFLRRDGRRDDPSDGNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKPKL
Sbjct: 61  NTAIRCFLRRDGRRDDPSDGNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKPKL 120

Query: 121 AGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSS 180
           AGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSS
Sbjct: 121 AGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSS 180

Query: 181 EHSGDGDGDG--NHCP 194
           EHSGDGDGDG  NHCP
Sbjct: 181 EHSGDGDGDGDGNHCP 196

[Close]

BLAST of MC06g2088 vs. ExPASy TrEMBL
Match: A0A6J1ELF7 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435709 PE=3 SV=1)

HSP 1 Score: 315 bits (806), Expect = 2.01e-107
Identity = 158/191 (82.72%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFHAPPPPP-CHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALA 60
           MRPTPLDADDTV F  PPPPP CHD RAC+WRPYSNS+DFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRDGRRDD-PSDGNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKP 120
           LNTAIRCFLRR G  D+ PSD        +Q+ELRDE KP L+D LKMAPALVFSAE+KP
Sbjct: 61  LNTAIRCFLRRRGDADENPSDT-------RQEELRDETKPTLVDKLKMAPALVFSAEIKP 120

Query: 121 KLAGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPS 180
           KLAGAEAECTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPS
Sbjct: 121 KLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPS 180

Query: 181 SSEHSGDGDGD 189
           S+ H GDGDGD
Sbjct: 181 SAAHGGDGDGD 184

[Close]

BLAST of MC06g2088 vs. ExPASy TrEMBL
Match: A0A0A0KNJ7 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G146260 PE=3 SV=1)

HSP 1 Score: 311 bits (798), Expect = 3.00e-106
Identity = 154/186 (82.80%), Postives = 162/186 (87.10%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFHAPPPPPCHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDTVRF  PP PPCHD RAC+WRPYS+S+DFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRDGRRDDPSDGNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKPKL 120
           NTAIRCFLRR G  DD S  +      +Q+EL +E KP L+D LKMAPALVFSAEMKPKL
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDS------RQEELPEETKPTLMDKLKMAPALVFSAEMKPKL 120

Query: 121 AGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSS 180
           AGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS
Sbjct: 121 AGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSS 180

Query: 181 EHSGDG 186
              GDG
Sbjct: 181 ASGGDG 180

[Close]

BLAST of MC06g2088 vs. ExPASy TrEMBL
Match: A0A5D3C3S3 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001240 PE=3 SV=1)

HSP 1 Score: 310 bits (794), Expect = 1.22e-105
Identity = 152/186 (81.72%), Postives = 164/186 (88.17%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFHAPPPPPCHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDAD+TVRF  PP PPCHD RAC+WRPYSNS+DFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRDGRRDDPSDGNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKPKL 120
           NTAIRCFLRR G  DD S+ +      +Q+EL++E KP L++ LKMAPALVFSAEMKPKL
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDS------RQEELQEETKPTLVEKLKMAPALVFSAEMKPKL 120

Query: 121 AGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSS 180
           AGAEAECTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS
Sbjct: 121 AGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSS 180

Query: 181 EHSGDG 186
              GDG
Sbjct: 181 VSGGDG 180

[Close]

BLAST of MC06g2088 vs. ExPASy TrEMBL
Match: A0A1S3AU49 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103482889 PE=3 SV=1)

HSP 1 Score: 310 bits (794), Expect = 1.22e-105
Identity = 152/186 (81.72%), Postives = 164/186 (88.17%), Query Frame = 0


Query: 1   MRPTPLDADDTVRFHAPPPPPCHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDAD+TVRF  PP PPCHD RAC+WRPYSNS+DFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRDGRRDDPSDGNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKPKL 120
           NTAIRCFLRR G  DD S+ +      +Q+EL++E KP L++ LKMAPALVFSAEMKPKL
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDS------RQEELQEETKPTLVEKLKMAPALVFSAEMKPKL 120

Query: 121 AGAEAECTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSS 180
           AGAEAECTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS
Sbjct: 121 AGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSS 180

Query: 181 EHSGDG 186
              GDG
Sbjct: 181 VSGGDG 180

[Close]

BLAST of MC06g2088 vs. TAIR 10
Match: AT5G47610.1 (RING/U-box superfamily protein )

HSP 1 Score: 135.6 bits (340), Expect = 4.3e-32
Identity = 75/164 (45.73%), Postives = 101/164 (61.59%), Query Frame = 0


Query: 20  PPCHDFRACSWRPYSNSKDFEANAAVVVIILLCGLICALALNTAIRCFLRRDGRRDDPSD 79
           P C+    C W+PYSNS DF ANA+V++I+++  LICAL+L  AIRCFLR     +D   
Sbjct: 18  PTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETED--- 77

Query: 80  GNGLSQAGQQQELRDEPKPILLDTLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEE 139
                      + + +P+     T    P LV+S+++  +LAGAEAEC ICL+EF +GE 
Sbjct: 78  -----------DHKPDPEAAASST-PTTPTLVYSSDL--ELAGAEAECAICLSEFEQGES 137

Query: 140 IRVLSICKHGFHVQCIQTWLILHSSCPTCRRS-YLPPSPSSSEH 183
           I+VL  C+HGFHV+CI  WL   SSCPTCR S +   S + S H
Sbjct: 138 IQVLEKCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSH 163

[Close]

BLAST of MC06g2088 vs. TAIR 10
Match: AT4G17245.1 (RING/U-box superfamily protein )

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-28
Identity = 71/161 (44.10%), Postives = 88/161 (54.66%), Query Frame = 0


Query: 27  ACSWRPYSNSKDFEANAAVVVIILLCGLICALALNTAIRCFLRRDGRRDDPSDGNGLSQA 86
           +C W+PYS+S DF ANA +++IIL C  IC L+L+ AIRC LR                 
Sbjct: 21  SCGWKPYSHSNDFAANAFLLLIILFCSFICVLSLHAAIRCCLR----------------- 80

Query: 87  GQQQELRDEPKP---ILLDTLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVL 146
                L+  PKP   +        P LV+S  +   LAG EAEC ICL+EF +G+ +RVL
Sbjct: 81  ---PVLQHVPKPDPDLEATHPDAPPTLVYSPGL--NLAGNEAECIICLSEFQDGDTLRVL 140

Query: 147 SICKHGFHVQCIQTWL-ILHSSCPTCRRSYLPPSPSSSEHS 184
             CKHGFHV CIQ WL   HSSCPTCR +     P     S
Sbjct: 141 ERCKHGFHVYCIQKWLSSSHSSCPTCRTNIFSSPPQLHSQS 159

[Close]

BLAST of MC06g2088 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24
Identity = 64/155 (41.29%), Postives = 85/155 (54.84%), Query Frame = 0


Query: 35  NSKDFEANAAVVVIILLCGLICALALNTAIRCFLRRDGR---RDDPSDGNGLSQAGQQQE 94
           N    + +  +++  LLC LICAL +N+ +RC LR   R    +DP D N          
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNA--------- 92

Query: 95  LRDEPKPILLDTLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLSICKHGFH 154
             +  K I    LK+ P   +S E+K K      EC ICL +F EGE +RVL  C HGFH
Sbjct: 93  --NVAKGIKKRALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFH 152

Query: 155 VQCIQTWLILHSSCPTCRRSYLP-PSPSSSEHSGD 186
           V+CI TWL+ HSSCPTCR+S L   +P++    GD
Sbjct: 153 VKCIDTWLLSHSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]

BLAST of MC06g2088 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-23
Identity = 58/144 (40.28%), Postives = 78/144 (54.17%), Query Frame = 0


Query: 35  NSKDFEANAAVVVIILLCGLICALALNTAIRCFLRRDGRRDDPSDGNGLSQAGQQQELRD 94
           N   F+ N  +++  LLC LICAL+LN+A+RC LR   R       +  S A        
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 95  EPKPILLDTLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLSICKHGFHVQC 154
               +    LK  P  ++ + +    A    EC ICL +F +GE++RVL  C HGFHV+C
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKA---TECLICLGDFEDGEKVRVLPKCNHGFHVRC 144

Query: 155 IQTWLILHSSCPTCRRSYLPPSPS 179
           I TWL+  SSCPTCR+S L   PS
Sbjct: 145 IDTWLLSRSSCPTCRQSLLLEQPS 165

[Close]

BLAST of MC06g2088 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 5.3e-22
Identity = 58/149 (38.93%), Postives = 78/149 (52.35%), Query Frame = 0


Query: 33  YSNSKDFEANAAVVVIILLCGLICALALNTAIRCFLRRDGRRDDPSDGNGLSQAGQQQEL 92
           Y+   +F+AN  +++  LLC LI AL LN+ +RC +R          G GLS +     +
Sbjct: 24  YTRDMNFDANMVIILAALLCALILALGLNSILRCAMR---------CGFGLSSSAAAGTV 83

Query: 93  RDEPKPILLDTLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLSICKHGFHV 152
            D       +  K   A   S E+K     A  EC ICL EF++GE +RVL  C H FH+
Sbjct: 84  ADRAGLKKRELKKFPVAEYGSGEVKI----AATECAICLGEFADGERVRVLPPCNHSFHM 143

Query: 153 QCIQTWLILHSSCPTCRRSYLPPSPSSSE 182
            CI TWL+ HSSCP CR S +    + SE
Sbjct: 144 SCIDTWLVSHSSCPNCRHSLIEVHVAGSE 159

The following BLAST results are available for this feature:

BLAST of MC06g2088 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGJ6	6.1e-31	45.73	RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1	[more]
Q9FLC6	1.6e-23	41.29	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9SG96	1.8e-22	40.28	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q6NQG7	2.0e-21	40.58	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
Q9LZV8	7.5e-21	38.93	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]

BLAST of MC06g2088 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159530.1	4.34e-141	98.98	RING-H2 finger protein ATL79-like [Momordica charantia]	[more]
KAG7017072.1	7.70e-108	82.81	RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022928967.1	4.15e-107	82.72	RING-H2 finger protein ATL79-like [Cucurbita moschata] >KAG6579615.1 RING-H2 fin...	[more]
XP_038875287.1	4.67e-106	82.54	RING-H2 finger protein ATL79-like [Benincasa hispida]	[more]
XP_004145965.1	6.19e-106	82.80	RING-H2 finger protein ATL79 [Cucumis sativus] >KGN49952.1 hypothetical protein ...	[more]

BLAST of MC06g2088 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZ01	2.10e-141	98.98	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11102591...	[more]
A0A6J1ELF7	2.01e-107	82.72	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435709...	[more]
A0A0A0KNJ7	3.00e-106	82.80	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G146260 PE...	[more]
A0A5D3C3S3	1.22e-105	81.72	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3AU49	1.22e-105	81.72	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103482889 PE=3 ...	[more]

BLAST of MC06g2088 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47610.1	4.3e-32	45.73	RING/U-box superfamily protein	[more]
AT4G17245.1	2.2e-28	44.10	RING/U-box superfamily protein	[more]
AT5G05280.1	1.1e-24	41.29	RING/U-box superfamily protein	[more]
AT3G10910.1	1.3e-23	40.28	RING/U-box superfamily protein	[more]
AT5G01880.1	5.3e-22	38.93	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 127..168 e-value: 7.1E-6 score: 35.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 126..169 e-value: 3.4E-12 score: 46.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 127..169 score: 12.076194
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 85..174 e-value: 8.4E-20 score: 72.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..194
None	No IPR available	PANTHER	PTHR46905:SF1	RING-H2 FINGER PROTEIN ATL79-LIKE	coord: 21..183
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 126..169 e-value: 2.51565E-15 score: 65.0157
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 119..175
IPR044602	RING-H2 finger protein ATL10/ATL75-79	PANTHER	PTHR46905	RING-H2 FINGER PROTEIN ATL78	coord: 21..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g2088.1	MC06g2088.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity