MC06g2059 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g2059
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionF-box/LRR-repeat protein
LocationMC06: 28084634 .. 28084915 (-)
RNA-Seq ExpressionMC06g2059
SyntenyMC06g2059
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGCCCCAAATCTCAAAAGTGTCCAGTTTTACAATGTTGTGCCTTGTGTAAAATCTGCTTCTGAGTTTCTGTGCATACACGAAATACATATATTAGTTCGTCATTATGAACCCAGAAACCGGCAAAAGATGGAGGAAAATATCTCTAAATTGCTTAGAGTTTTTCATAATGCAACTTCTTTTACGCTGCCGTCCAATACAACACAGGTTCTGTTTAAAGCTCCTTCTTTAAGCGGGTTTTGTTTTCCTAATTTGAAACATTTGAAGTTCAAAACAAAG

mRNA sequence

ATGTGTGCCCCAAATCTCAAAAGTGTCCAGTTTTACAATGTTGTGCCTTGTGTAAAATCTGCTTCTGAGTTTCTGTGCATACACGAAATACATATATTAGTTCGTCATTATGAACCCAGAAACCGGCAAAAGATGGAGGAAAATATCTCTAAATTGCTTAGAGTTTTTCATAATGCAACTTCTTTTACGCTGCCGTCCAATACAACACAGGTTCTGTTTAAAGCTCCTTCTTTAAGCGGGTTTTGTTTTCCTAATTTGAAACATTTGAAGTTCAAAACAAAG

Coding sequence (CDS)

ATGTGTGCCCCAAATCTCAAAAGTGTCCAGTTTTACAATGTTGTGCCTTGTGTAAAATCTGCTTCTGAGTTTCTGTGCATACACGAAATACATATATTAGTTCGTCATTATGAACCCAGAAACCGGCAAAAGATGGAGGAAAATATCTCTAAATTGCTTAGAGTTTTTCATAATGCAACTTCTTTTACGCTGCCGTCCAATACAACACAGGTTCTGTTTAAAGCTCCTTCTTTAAGCGGGTTTTGTTTTCCTAATTTGAAACATTTGAAGTTCAAAACAAAG

Protein sequence

MCAPNLKSVQFYNVVPCVKSASEFLCIHEIHILVRHYEPRNRQKMEENISKLLRVFHNATSFTLPSNTTQVLFKAPSLSGFCFPNLKHLKFKTK
Homology
BLAST of MC06g2059 vs. NCBI nr
Match: XP_038890213.1 (uncharacterized protein LOC120079853 [Benincasa hispida])

HSP 1 Score: 127 bits (318), Expect = 1.51e-31
Identity = 59/96 (61.46%), Postives = 81/96 (84.38%), Query Frame = 0

Query: 1   MCAPNLKSVQFYNVVPCVKSASEFLCIHEIHILV-RHY--EPRNRQKMEENISKLLRVFH 60
           +C PNL+SV+F NV+PC+KSASEF+C+H+++I V  +Y    RN+QK++EN+S+LLRVFH
Sbjct: 184 LCTPNLRSVEFRNVIPCLKSASEFVCVHKVYITVDNNYFGRGRNQQKIKENLSQLLRVFH 243

Query: 61  NATSFTLPSNTTQVLFKAPSLSGFCFPNLKHLKFKT 93
           NATSFTLP N  QV+FK+PSL+G  F NL+HL+F+T
Sbjct: 244 NATSFTLPPNAKQVMFKSPSLNGCSFHNLRHLEFRT 279

BLAST of MC06g2059 vs. NCBI nr
Match: XP_038890214.1 (F-box/LRR-repeat protein At3g26922-like [Benincasa hispida])

HSP 1 Score: 72.4 bits (176), Expect = 1.96e-12
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = 0

Query: 4   PNLKSVQFYNVVPCVKSASEFLCIHEIHILVRH--YEP--RNRQKMEENISKLLRVFHNA 63
           P L++V F NV+P VKS SEF CIH++ I ++   +E      QK++ N  +LL VFHNA
Sbjct: 238 PTLETVNFINVLPIVKSDSEFSCIHKVDIQLKDSIFERVGSQTQKLKSNFRELLSVFHNA 297

Query: 64  TSFTLPSNTTQVLFKAPSLSGFCFPNLKHLKFKTK 94
            SFTLP   T V+     L    F N+ HL+ KTK
Sbjct: 298 RSFTLPLKATLVISLYDELF---FHNMSHLRLKTK 329

BLAST of MC06g2059 vs. NCBI nr
Match: XP_004141639.1 (F-box/LRR-repeat protein At3g26922 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 7.09e-12
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 0

Query: 4   PNLKSVQFYNVVPCVKSASEFLCIHEIHI-LVRHYEPRNRQKMEENISKLLRVFHNATSF 63
           P L+++ F NV+P VKS  EF  I ++ I LV  +E  +R   +    +LL VFH A SF
Sbjct: 249 PTLENISFVNVLPTVKSDYEFSRIDKVDIQLVSRFERDDRNSRKSKFRELLSVFHMARSF 308

Query: 64  TLPSNTTQVLFKAPSLSGFCFPNLKHLKFKTK 94
           TLP   T  +    +    CF N+KHL+ +TK
Sbjct: 309 TLPLKLTMQVMSLDNFDALCFHNMKHLRLRTK 340

BLAST of MC06g2059 vs. NCBI nr
Match: KAE8649006.1 (hypothetical protein Csa_008454 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 7.14e-12
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 0

Query: 4   PNLKSVQFYNVVPCVKSASEFLCIHEIHI-LVRHYEPRNRQKMEENISKLLRVFHNATSF 63
           P L+++ F NV+P VKS  EF  I ++ I LV  +E  +R   +    +LL VFH A SF
Sbjct: 249 PTLENISFVNVLPTVKSDYEFSRIDKVDIQLVSRFERDDRNSRKSKFRELLSVFHMARSF 308

Query: 64  TLPSNTTQVLFKAPSLSGFCFPNLKHLKFKTK 94
           TLP   T  +    +    CF N+KHL+ +TK
Sbjct: 309 TLPLKLTMQVMSLDNFDALCFHNMKHLRLRTK 340

BLAST of MC06g2059 vs. NCBI nr
Match: XP_008459617.1 (PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 1.85e-11
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 0

Query: 4   PNLKSVQFYNVVPCVKSASEFLCIHEIHILVRHY----EPRNRQKMEENISKLLRVFHNA 63
           P LK+V F NV+P ++S SEF CI ++ I ++      +    Q+++     LL V HNA
Sbjct: 248 PTLKAVNFVNVLPVLESDSEFSCIQKVDIQLKDSVFTTDGSQTQELKSKFIDLLSVLHNA 307

Query: 64  TSFTLPSNTTQVLFKAPSLSGFCFPNLKHLKFKTK 94
           +SFTLP   TQV+     LS   F N++HL+ KTK
Sbjct: 308 SSFTLPMKATQVISSYKELS---FHNMRHLRLKTK 339

BLAST of MC06g2059 vs. ExPASy TrEMBL
Match: A0A0A0KSW6 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650430 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.09e-12
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 0

Query: 4   PNLKSVQFYNVVPCVKSASEFLCIHEIHI-LVRHYEPRNRQKMEENISKLLRVFHNATSF 63
           P L+++ F NV+P VKS  EF  I ++ I LV  +E  +R   +    +LL VFH A SF
Sbjct: 249 PTLENISFVNVLPTVKSDYEFSRIDKVDIQLVSRFERDDRNSRKSKFRELLSVFHMARSF 308

Query: 64  TLPSNTTQVLFKAPSLSGFCFPNLKHLKFKTK 94
           TLP   T  +    +    CF N+KHL+ +TK
Sbjct: 309 TLPLKLTMQVMSLDNFDALCFHNMKHLRLRTK 340

BLAST of MC06g2059 vs. ExPASy TrEMBL
Match: A0A1S3CB41 (F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498689 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.95e-12
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 0

Query: 4   PNLKSVQFYNVVPCVKSASEFLCIHEIHILVRHY----EPRNRQKMEENISKLLRVFHNA 63
           P LK+V F NV+P ++S SEF CI ++ I ++      +    Q+++     LL V HNA
Sbjct: 248 PTLKAVNFVNVLPVLESDSEFSCIQKVDIQLKDSVFTTDGSQTQELKSKFIDLLSVLHNA 307

Query: 64  TSFTLPSNTTQVLFKAPSLSGFCFPNLKHLKFKTK 94
           +SFTLP   TQV+     LS   F N++HL+ KTK
Sbjct: 308 SSFTLPMKATQVISSYKELS---FHNMRHLRLKTK 339

BLAST of MC06g2059 vs. ExPASy TrEMBL
Match: A0A5A7TCF1 (F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00570 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.24e-07
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 4   PNLKSVQFYNVVPCVKSASEFLCIHEIHILVRHY----EPRNRQKMEENISKLLRVFHNA 63
           P LK+V F NV+P ++S SEF CI ++ I ++      +    Q+++     LL V HNA
Sbjct: 248 PTLKAVNFVNVLPVLESDSEFSCIQKVDIQLKDSVFTTDGSQTQELKSKFIDLLSVLHNA 307

Query: 64  TSFTLPSNTTQ-VLF 73
           +SFTLP   TQ VLF
Sbjct: 308 SSFTLPMKATQEVLF 322

BLAST of MC06g2059 vs. ExPASy TrEMBL
Match: A0A6J1CKA9 (LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica charantia OX=3673 GN=LOC111012077 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.06e-06
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 0

Query: 2   CAPNLKSVQFYNVVPCVKSASEFLCIHEIHILVRHYEPRNR-----QKMEENISKLLRVF 61
           C  +L++V F N++P V SA EF CI +++I V +Y+  +      Q      S+L RVF
Sbjct: 343 CTSSLRNVTFSNMLPTVNSALEFSCIQKVNIEVHNYQFSSGNGYFCQNKIAAFSELFRVF 402

Query: 62  HNATSFTLPSNTTQ 70
           HNA SF LP   TQ
Sbjct: 403 HNARSFILPLTPTQ 416

BLAST of MC06g2059 vs. ExPASy TrEMBL
Match: A0A061FRY8 (F-box/RNI-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_045485 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.63e-06
Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 0

Query: 3   APNLKSVQFYNVVPCVKSASEFLCIHEIHILVRHYEPRNRQKMEENISKLLRV---FHNA 62
           AP L + ++  + P V        + +++  ++   P  ++  EE++ +L++    F +A
Sbjct: 253 APRLTTFKYSGIPPIVCLTDHLASVDDVYFDIK--TPGFKRNEEESVLRLIKTLNEFRHA 312

Query: 63  TSFTLPSNTTQVLFKAPSLSG---FCFPNLKHLKFKTK 94
            S TL S+T QVL K PSL G   F F NLKHLK K K
Sbjct: 313 KSLTLSSSTVQVLTKFPSLVGQNQFPFANLKHLKIKVK 348

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038890213.11.51e-3161.46uncharacterized protein LOC120079853 [Benincasa hispida][more]
XP_038890214.11.96e-1245.26F-box/LRR-repeat protein At3g26922-like [Benincasa hispida][more]
XP_004141639.17.09e-1240.22F-box/LRR-repeat protein At3g26922 [Cucumis sativus][more]
KAE8649006.17.14e-1240.22hypothetical protein Csa_008454 [Cucumis sativus][more]
XP_008459617.11.85e-1141.05PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo][more]
Match NameE-valueIdentityDescription
A0A0A0KSW64.09e-1240.22F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650430 PE=4 ... [more]
A0A1S3CB418.95e-1241.05F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A5A7TCF17.24e-0742.67F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A6J1CKA91.06e-0641.89LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica ch... [more]
A0A061FRY83.63e-0634.69F-box/RNI-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_045485 PE=4... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g2059.1MC06g2059.1mRNA