MC06g2040 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g2040
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	MC06: 27898808 .. 27899088 (+)
RNA-Seq Expression	MC06g2040
Synteny	MC06g2040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCACAACAAAAATCTTGACTCGACAGCTTGCATCAGGTTCGGTTCTCCCTATAGATGGCCTTTACAAACCTCTATGGAAGACCACATATCCAAAAAAAAGGGTAAATTTCTAAACTGGGAACTCGTCCACACATGCCTCAAGCTGCAAAGAAGATGTCCATGGTGGTCTATCCCCCCTTGTTGGTGCTGTCTGTGCAAGGCAAATTTTGAATCTCAAGCTCACATTTTCATGGATTGCCCCTCCTCATCGGCAATATGGAATCATTTATTCTCTATTTTT

mRNA sequence

TTCACAACAAAAATCTTGACTCGACAGCTTGCATCAGGTTCGGTTCTCCCTATAGATGGCCTTTACAAACCTCTATGGAAGACCACATATCCAAAAAAAAAATTTCTAAACTGGGAACTCGTCCACACATGCCTCAAGCTGCAAAGAAGATGTCCATGGTGGTCTATCCCCCCTTGTTGGTGCTGTCTGTGCAAGGCAAATTTTGAATCTCAAGCTCACATTTTCATGGATTGCCCCTCCTCATCGGCAATATGGAATCATTTATTCTCTATTTTT

Coding sequence (CDS)

TTCACAACAAAAATCTTGACTCGACAGCTTGCATCAGGTTCGGTTCTCCCTATAGATGGCCTTTACAAACCTCTATGGAAGACCACATATCCAAAAAAAAAATTTCTAAACTGGGAACTCGTCCACACATGCCTCAAGCTGCAAAGAAGATGTCCATGGTGGTCTATCCCCCCTTGTTGGTGCTGTCTGTGCAAGGCAAATTTTGAATCTCAAGCTCACATTTTCATGGATTGCCCCTCCTCATCGGCAATATGGAATCATTTATTCTCTATTTTT

Protein sequence

FTTKILTRQLASGSVLPIDGLYKPLWKTTYPKKKFLNWELVHTCLKLQRRCPWWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWNHLFSIF

Homology

[Close]

BLAST of MC06g2040 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 2.20e-14
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 1   FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCP 60
           F T  + + L+  S  P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P
Sbjct: 750 FDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLP 809

Query: 61  WWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN 86
            W++ P WC +C  + E   H+F+ CP S  +W+
Sbjct: 810 NWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 843

[Close]

BLAST of MC06g2040 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 2.21e-14
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 1   FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCP 60
           F T  + + L+  S  P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P
Sbjct: 844 FDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLP 903

Query: 61  WWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN 86
            W++ P WC +C  + E   H+F+ CP S  +W+
Sbjct: 904 NWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 937

[Close]

BLAST of MC06g2040 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 2.22e-14
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 1    FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCP 60
            F T  + R +A   + P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P
Sbjct: 952  FDTASVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLP 1011

Query: 61   WWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN 86
             W++ P WC +C  + E   H+F+ CP S  +W+
Sbjct: 1012 NWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 1045

[Close]

BLAST of MC06g2040 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 9.96e-14
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 1   FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCP 60
           F T  + + L+   V P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P
Sbjct: 252 FDTASVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLP 311

Query: 61  WWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN 86
            W++ P WC +C  + E   H+F+ CP S  +W+
Sbjct: 312 NWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 345

[Close]

BLAST of MC06g2040 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.01e-13
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 1   FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCP 60
           F T  + + L+   V P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P
Sbjct: 295 FDTASVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLP 354

Query: 61  WWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN 86
            W++ P WC +C  + E   H+F+ CP S  +W+
Sbjct: 355 NWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 388

[Close]

BLAST of MC06g2040 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.07e-14
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 1   FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCP 60
           F T  + + L+  S  P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P
Sbjct: 750 FDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLP 809

Query: 61  WWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN 86
            W++ P WC +C  + E   H+F+ CP S  +W+
Sbjct: 810 NWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 843

[Close]

BLAST of MC06g2040 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.07e-14
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 1   FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCP 60
           F T  + + L+  S  P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P
Sbjct: 844 FDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLP 903

Query: 61  WWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN 86
            W++ P WC +C  + E   H+F+ CP S  +W+
Sbjct: 904 NWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 937

[Close]

BLAST of MC06g2040 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.08e-14
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 1    FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCP 60
            F T  + R +A   + P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P
Sbjct: 952  FDTASVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLP 1011

Query: 61   WWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN 86
             W++ P WC +C  + E   H+F+ CP S  +W+
Sbjct: 1012 NWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 1045

[Close]

BLAST of MC06g2040 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.82e-14
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 1   FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCP 60
           F T  + + L+   V P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P
Sbjct: 252 FDTASVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLP 311

Query: 61  WWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN 86
            W++ P WC +C  + E   H+F+ CP S  +W+
Sbjct: 312 NWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 345

[Close]

BLAST of MC06g2040 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.90e-14
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 1   FTTKILTRQLASGSVLPID---GLYKPLWKTTYPKK-KFLNWELVHTCL----KLQRRCP 60
           F T  + + L+   V P +    LYK LWK  +PKK KF  W L+H C+    +LQ+R P
Sbjct: 295 FDTASVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLP 354

Query: 61  WWSIPPCWCCLCKANFESQAHIFMDCPSSSAIWN 86
            W++ P WC +C  + E   H+F+ CP S  +W+
Sbjct: 355 NWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWS 388

[Close]

BLAST of MC06g2040 vs. TAIR 10
Match: AT1G43730.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 50.4 bits (119), Expect = 8.7e-07
Identity = 24/66 (36.36%), Postives = 35/66 (53.03%), Query Frame = 0


Query: 22  YKPLW-KTTYPKKKFLNWELVHTCLKLQRRCPWWSIP-PCWCCLCKANFESQAHIFMDCP 81
           YK +W K   PK  F+ W +    L  + R   W +  P  C LC ++ ES+AH+F +CP
Sbjct: 152 YKAVWFKNHVPKHAFICWVVAWNRLHTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFECP 211

Query: 82  SSSAIW 86
              A+W
Sbjct: 212 FCGAVW 217

[Close]

BLAST of MC06g2040 vs. TAIR 10
Match: AT4G04650.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.1e-05
Identity = 22/66 (33.33%), Postives = 34/66 (51.52%), Query Frame = 0


Query: 22  YKPLW-KTTYPKKKFLNWELVHTCLKLQRRCPWWSIP-PCWCCLCKANFESQAHIFMDCP 81
           +K +W K   PK  F+ W +    L  + R   W +  P  C LC A+ +S+AH+F +C 
Sbjct: 130 HKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQ 189

Query: 82  SSSAIW 86
            S  +W
Sbjct: 190 FSGVVW 195

The following BLAST results are available for this feature:

BLAST of MC06g2040 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g2040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044556.1	2.20e-14	38.30	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	2.21e-14	38.30	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	2.22e-14	38.30	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
TYK29578.1	9.96e-14	38.30	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044451.1	1.01e-13	38.30	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of MC06g2040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TR15	1.07e-14	38.30	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TIB8	1.07e-14	38.30	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	1.08e-14	38.30	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3E1E3	4.82e-14	38.30	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TSA7	4.90e-14	38.30	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of MC06g2040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43730.1	8.7e-07	36.36	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT4G04650.1	2.1e-05	33.33	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 21..85 e-value: 1.4E-8 score: 35.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g2040.1	MC06g2040.1	mRNA