MC06g2034 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g2034
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA-directed RNA polymerases I and III subunit RPAC1
Location	MC06: 27861272 .. 27868094 (-)
RNA-Seq Expression	MC06g2034
Synteny	MC06g2034

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCTAAAGATAAGAGATCGCGTGATATATTGGGCTCAAAATTTGAACAATGTGTGGGCAAAGAAGGCATTGAATGGATAATGAATCTTCCAGACGTGCCCATGAAGCTCCCACCGCACTTGGAATTGCATAGGACCAGAGTCTGAATGCAAAGCCGATGCTCCCATTCATGTACTCATCTTTTCCCTCTCCCATATTTTGTTTGTTTTATCATCTCTTCTTTCTTCAAATTCTAAGAATGTTGTTCCACTCAAGGAAATATAAATTTTGTACTTTTTGTTGCAGAAGAAAAGTTTGCTCAATTTTTTTGTTCTTTCAGTTGGGAGATATTTTTTAACACATCTACTATAGAGAAGTATATTTATATATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATTCTTTTTTTAACACATTTACTATAGTTAATTACATAGTAGGTTGAATGCAAGAGTAAGTATTGTCTTTTCCCATGTAATTTATTGGATTTTTATTTATAGAACTTATAGTTTCTCATGGTCCTTGTGAAAATATGTTGGCTTTTGTAGACAGATACCATACAGTATTCTGGAGCATATGCTTCGATGGGTGTTGATAACAGTTTACAATTGGATTATTTTCGCAACAACTTTAAAATTGAAGTGATTGATCTAGGAGAGGATGACATTGAGTTTGACATGATTGGTATTGACCCGGCACTCGCTAATGCGTTTCGAAGAACCCTTATAGCTGAGGTAGGTAATCGAGCACAATGAAACAAAACTAAGTTATTTATTATTTTTAGTGAGAATTTGTTGAGTTTTGGTATTTACTTCCTTGTCACCAGTTCTCGTGGGCTATTATGCGATCAATATATTAAAACGCTCATAAGGCTTAGCCTGAGGCTTTGCCTTAAGGCATAGTCTAATAGCTGACACTTTCTTTGCTTCATTTGAAGCTCATGCCTTGTATGGAAGAAACATATGCTTCTATGAGAATGTATGAAAGTTGTGCCTTAAGTAATGGCTTGAAGAATAACGACAGTTTATTGTCTTTTCTTCAAAATATTAAAGATTGCTCATGTGTTCAAAGCTAATAAAATAGGAAATTTGGTGGTAAGGGCTTGGGATGTTTGGAGTTCAACTTGTTAGACAAGATGCTGGGTGCAAGCCTACATACCCTGGTTATGGAAAAGGAAATTGGGGTTGTAATTGTTTAGCCTATTATTCCTTTTCTGATGTAGCTTAAAGAAACACTATGGATAGAGGTTAAGAATGAGGCAATCTTGTTAACTTTTTTCCCCCTCAATATATTTCAATTTAAAATAAGGCTCATGTCTTGCCTCTTCTAGGGAAAAAACAATGGGAATATTTTGAGTCTTTTAGAGCATTTTAGAGCATTCCATGTGATTAGGGATGTTAAATAATGAATGGGATATATGTTATTTTTTTGTTTGCAGTTTCTTGTATCTGGTTTCTTTCCATGTTGAATATTACATAGTTCACGTTGCTGTTATGTTGATTTAGATTTGATTTGTAATTTGAGGTAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTTGCTAACAATACGTCAATAATCCAAGATGAAGTGCTTGCCCATAGGTTAGGCCTCGTTCCGATTCATGTTGATCCAAGGCTTTTTGAGTACTCAGGTATTTCTGTGTATATCTATGTAAATTTAATGTGCTTATCTATACTGATACTGTGTATATTCAAAATTAGATGAAGACACACCAAATGAGAAGAATACCATTGTTTTTAGACTCCATGCTCGCTGTGAACGTGGAAAACCTCGTCTTACAGGTATTTGCCTTTTTCTTTCAGGGTTCAATGCTGTATACATAAATTTTCTCAATTTTAAACTTTCAACCACTACTAATGATGAATGTATAATTGGTGATTCAGTGACATCAAAAGCATTGACGTGGTTACCTAATGGTAGTGAATTTCCTTTGGTATCGGACAAATCAGTTCCAAACTCAAAACCCAAAACCTATACTTCTTTTAGTTGCAGCCAAGATGCGCTACCAGAATTTTCCAAAAATCCAATTGGTCCGAAAGACAGTGATATTATAATTGCTAGACTTTGCCCGGGTCAGGTAATCAAACTCTAAACTTTATCTATTATCTGTTGAAATATAGGGAAGAAGGGGTGTGCATAGGTAGATGACTGAAGCTGATGAGTTATGGTTAGAATAACATGTATTGAATTTAAAATGACTCATGTGCTTATAATTTTGTTCGCAAATGGGGATGTATTTGAGTTCATTTGAAAAAGAAAATCATTGTATATAAATATGAATTTGGCATGTATAATCTATGTGTATCACTTCATGTATGTGGTGATTGTGCTGCAGGCTAATTATTTATACTTCTGCTAGTAATTTTACTTCCAATTGACACGCATTTTGGTAGTTCCAATATTATAGATTTCTTTGTACTTATTAATAAGAAGATGTAACAAAAGAGATGAGATATCAACCCATTATTACCAAAGTTAGAATGTAAAGATGAAAACAATCGAACTTGATCCTAAAATTAGTCAAGAGTAGAGTCACTTGCTTGAAAAGTTCTTTTGTTTCTTTCATACCAAAGTCTCCACCAAAGTTCCACCGTTGAATTATACCACAAGATTTCTTTGTACTTGATGAAATTCTAAGTTTCGTATTTTAAAAAAGATTATTTAAGTTTAAAGTACTCTTGAAGAAAAGGGTTATTTGCAATGCTACAATATTGGGTATGTTTCAGTGCTTAATGGCTTAATAGAGTTGCTCAGTAGTTGACAGGTGTAAATTTCTTAATTCTTGCTTCAAACATTTATAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCCCCAGTGGCCACTGCTTGGTATAGGATGCTTCCAGAGGTGAGAAAACATGTTACTGAATTACTCAAAAATCCATAGATATTTTGAAGCCTAATGAAACTTGTGGTACTAGGTTGTACTTTTGGAGGAGATAGAGGATGAGTTGGCTGAAGAACTCAAAAGTAAATGTCCTGTTGATGTATTTGACATTGAAGACATTGCTAATGGTTAGTTTGCTTCTTATATTTGCTATTAAGTATCTTCGTACTTGGAACACTATGGTGGTAAAGATTCAGAGATGGGATGGATTCCCTAAGAATAAAGTTCTTGTCATGTATATAACTAATTTGACTGGATTACGGGTTCTGTTATATCCTTGATGGAGTTTTAGCCTTGTAACGTTACAATATTTTTGAAAGTCTATTTTATTTATTTATTTATTTTTACAAGAAACAACTTTTCATTGATATAGGAAAAGGAGAAAATTTCAAGGCTACAAACTCTCAAAGAGCGAAATAAAAAGAGAAAAAAGAAATGAAACAAACCAAAGAGAGTGAAGTTTTTTCCCTTTCCCCCGTATTCTATATCTCCTGCACTCCTGATGAATAAATGGAGAATTATTTGGTTCTTTTTTATCTTGAGAATATGGATTCCAAGCGGTCGCATGATGTTGGTCTTTTCTTGCAGTTCAAATTGCATCCATTTTTCTCTACACTTCATTATTGACCAATTCTATTTTGTAGGTAAGAAAAGGGCAACTGTAACACGCCCACGATCTTGCACATTATGTAGAGAATGCATAAGAGGAGAAGCATGGGAGAAACGTGTCTCATTGCGTCGTGTGAAGAATCATTTCATTTGTAAGTGATGATTTCTTTTTGAGCATAACTTAGAGGGTAGCTAGAAAGGATAAATCTTGGTGCTGATGGTCGGCACATTTTTGTTCAATGTTGGACAGCCACCATTTTTCTTCAATGTTGATTGTCGGACTATTGGTACCACGCTAATGCAATTCCCTCTAAACTTATGACAGCCACCATGAGTTTCTCTCAATTCTGTCAATTTATGGATATCAAAGTACCTTTCTGCCCGGAATAACCATGAATCTGGGTCCGTTCCTGTGAATATCGGCCGGCAGCTCTACCTTTTTAAACTTACTCTGATCATACCCTGGACTGTTATCTTTCGCCAGCCCACTTTCCCGACCTTGCGGGTTCGTTATTTCTTCCGCCGGATTCTTTTCGCTTAAGCGTTGATCATTCTCTCTCTCCAAAGGACTGGATTTGCCCTCCGCTTCTTGATTTTCCAGATACGAGTAGTGCTACCGCTTGCTGTGTACTTTCAATCTGTGAGCTAATCAGCGCCAAAGTTTTTTCGATCACCGGCAACTTATGAAGCTCTTCACGGATGTTTCCTAACTTCTTCTCCTCACAGCTTTCTTCTATCCTTTTCTATGCCATCGTTCCAAACTTTCCGTCCCAAGTTGAACTTGCTCTGATACCATGGTATCACCCTTACTATATTGATATTAAATAGCAAAAGAGGAACCTTTCCTTGATACAGAGTTGATATTAAATAGCGAAAGAGGAACTCACGCGCCGTACGTTGAACAACGGACCCGGGCGACACCCCACTATTCGCGCCCCTCCGCCGAGCCGAGGCAGGGCGGGGGCGGCACGGCTTCTCCTCATTGATTCGACGTGCCCCGAAGTAGTAGTACTTCGAGTGGCCGTAATGTGAATCGGTTCTTGCATTGTTTACCTCGCGCGATGGAAGCGTCGAGTCTCGCCGGTCGGTCCCTTTCTGTCGGCACCCTTCGCTGGGTGCGCGACGAACCTCGAAGCCCGCGTCGTGTTCCGCTTCGGACGTTTCGTGAAACGCGTTCGCGGGTCGTTTGATGTTTTAGGCATCGACAATGATCTTTCCACAGGTTCACCTACGGAAACCTTATTACGACTTGGAAAGCGTGTTCCGCTTCGGACGTTTCGTGAAACGCGTTCGCGGGTCGTTTGATGTTTTAGGCATCGACAATGATCTTTCCACAGGTTCACCTACGGAAACCTTATTACGACTTGGAAAATAAAATACCCACCTGAGAGAATTCTTTCCTCCCAAGTTACCCTGCCATACACCAAATAAAGCCTACCCAAAATGCACAAGGTTCCAGAATATAACCCCCCCACTGACCAAACATACAACTAATAATGAGTGGGGGAATTCCCATTTCTACCCCTCCTACACATAATTACAATTGGAGGTCTCACAGCTTTTCACGCTCTCAAGGAAATTTGGGTGGTCCAGCCACATGTTTTCAAAGTGAAAAAGGGAAGTGCCCCATTTTTTGTAGCCGAAACAGCCAAGAATAGGATGGTGGTCTGAAGTTTTTCTTGTAAGTCTAGTTACCGCTATTTCCTTGAACAGATCACTCCAATTAGGGGAGATGAGAGATGAGGGATCTGTCTAACCTTGAAGAAGAGATGTTTTGTCAATGTTACTCTAACGGTACCACTCTTTAAAGGCGCGTTTTCCAGCTTCAAGTCTTGAATCAAAGCATTAGGAGGTCTGAGAGTTTTCCAGCTAAGAAAAAGAATTTTGCTTTTCACGTTAAATGGTTATGGAGATGGGAAGTTTAAGACAGAGCCCTTTGGGGAGAGTCACTATTAACAAGTTTGGGATAAATATCTTCAGGAATTTCCCGTGGCATTAAATGGAAAGGCTCTCAAAGCCCGTGGAAAGACATTGCTAAATCCAGCAGGGTCTTTTAAAATAACGTCAGCTCGATTTCTTCTTGGGATGACTGTTAGGCCACCGATCAGCCGTTGAGAAAGTCCCAAGTCAAATCTGCTTCATAGCCCTTCATTAAGAGAGGAGGATCTTGGCTCCGTACTTGTGCAGATTGATCTGGGAAGGGACCGGTCTTAAAAAAATCATTTTTTTTTCCTTTGGACAGTAGCTCACAGCAGCATTAATAACTTTTTTTTTAGTTTTTTTTCTTTTTTAAAACGCTTATAAATCACATTCAAATTTGAAGAGTTATTTTAGCCGTGCCTTTGCATACTCTCAAACATACATTGCATAGTTATCTTTGTTAAAAGAACATATTTGGCATGGTTTCAAGAAATTCATTTTTCAGTTGCTTATTATGTTTTATATTTTCGTTCCTCTCCTCTATGCAGTTAAGATTGAATCAACCGGAGCTTTACCTCCTGAGGTGCTGTTCACTGAAGCTATAAAGATTTTGGAAGATAAGTGTGAACGTTTAATTGCTGAGCTCTCTTGATTCTTGTCATGGATAACCAATATAGATCAACTTATTATTCCATTATATTTACAAGTCACAAATTTTTGTAGTATGCGAGCTCTGATCTTCTATTTTTCTTTTGAAAAGAAAGTGGAACAGCAAGTCTTGTTGGGCCCAATTTTAAGAATGCCAAAGGAGATCCCGAGGCCTTCGTTATGTTAAATCAAGAATACCAGAAGAATTAATTACAAAACAGGCCTGCACAAACTCGAGAGAACTCGGGATAAAACCTCTCCAATGCTCTCTGTTTACGCTGTCCCTAGCGAAAATTACATAATAGAAAAACTCTTGCCGTGGTGCGATTAGGCAGCGAGTCCAATAGTACGGGAGTATCATTTTTAATACGGTAGTGATGTGGGAAATAGTGAATGAAAGAGAGTATGGTACTTTTATAGTACCAAAAAATTTCCTTGCAACTACAAGTGCAAGTGACCAAGTTGTGAGCTGGAGCTGATTGCTTTTGATTTTCAAATTATTCATGATTATTTGAATTATTATGTTTTTTGTCTTTTATTTTTTGAGTACAATTTGAGAGCATGGAAGTTTGAATCTTCGATCTCAAAAGGAGTAGGTGTCAATTATTGTTGAGATATACTTATGTTGACTTGAATTATTATGTTTTTAATGTTTC

mRNA sequence

ATGTCTGCTAAAGATAAGAGATCGCGTGATATATTGGGCTCAAAATTTGAACAATGTGTGGGCAAAGAAGGCATTGAATGGATAATGAATCTTCCAGACGTGCCCATGAAGCTCCCACCGCACTTGGAATTGCATAGGACCAGAGAATGCAAAGCCGATGCTCCCATTCATACAGATACCATACAGTATTCTGGAGCATATGCTTCGATGGGTGTTGATAACAGTTTACAATTGGATTATTTTCGCAACAACTTTAAAATTGAAGTGATTGATCTAGGAGAGGATGACATTGAGTTTGACATGATTGGTATTGACCCGGCACTCGCTAATGCGTTTCGAAGAACCCTTATAGCTGAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTTGCTAACAATACGTCAATAATCCAAGATGAAGTGCTTGCCCATAGGTTAGGCCTCGTTCCGATTCATGTTGATCCAAGGCTTTTTGAGTACTCAGATGAAGACACACCAAATGAGAAGAATACCATTGTTTTTAGACTCCATGCTCGCTGTGAACGTGGAAAACCTCGTCTTACAGTGACATCAAAAGCATTGACGTGGTTACCTAATGGTAGTGAATTTCCTTTGGTATCGGACAAATCAGTTCCAAACTCAAAACCCAAAACCTATACTTCTTTTAGTTGCAGCCAAGATGCGCTACCAGAATTTTCCAAAAATCCAATTGGTCCGAAAGACAGTGATATTATAATTGCTAGACTTTGCCCGGGTCAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCCCCAGTGGCCACTGCTTGGTATAGGATGCTTCCAGAGGTTGTACTTTTGGAGGAGATAGAGGATGAGTTGGCTGAAGAACTCAAAAGTAAATGTCCTGTTGATGTATTTGACATTGAAGACATTGCTAATGGTAAGAAAAGGGCAACTGTAACACGCCCACGATCTTGCACATTATGTAGAGAATGCATAAGAGGAGAAGCATGGGAGAAACGTGTCTCATTGCGTCGTGTGAAGAATCATTTCATTTTTAAGATTGAATCAACCGGAGCTTTACCTCCTGAGGTGCTGTTCACTGAAGCTATAAAGATTTTGGAAGATAAGTGTGAACGTTTAATTGCTGAGCTCTCTTGATTCTTGTCATGGATAACCAATATAGATCAACTTATTATTCCATTATATTTACAAGTCACAAATTTTTGTAGTATGCGAGCTCTGATCTTCTATTTTTCTTTTGAAAAGAAAGTGGAACAGCAAGTCTTGTTGGGCCCAATTTTAAGAATGCCAAAGGAGATCCCGAGGCCTTCGTTATGTTAAATCAAGAATACCAGAAGAATTAATTACAAAACAGGCCTGCACAAACTCGAGAGAACTCGGGATAAAACCTCTCCAATGCTCTCTGTTTACGCTGTCCCTAGCGAAAATTACATAATAGAAAAACTCTTGCCGTGGTGCGATTAGGCAGCGAGTCCAATAGTACGGGAGTATCATTTTTAATACGGTAGTGATGTGGGAAATAGTGAATGAAAGAGAGTATGGTACTTTTATAGTACCAAAAAATTTCCTTGCAACTACAAGTGCAAGTGACCAAGTTGTGAGCTGGAGCTGATTGCTTTTGATTTTCAAATTATTCATGATTATTTGAATTATTATGTTTTTTGTCTTTTATTTTTTGAGTACAATTTGAGAGCATGGAAGTTTGAATCTTCGATCTCAAAAGGAGTAGGTGTCAATTATTGTTGAGATATACTTATGTTGACTTGAATTATTATGTTTTTAATGTTTC

Coding sequence (CDS)

ATGTCTGCTAAAGATAAGAGATCGCGTGATATATTGGGCTCAAAATTTGAACAATGTGTGGGCAAAGAAGGCATTGAATGGATAATGAATCTTCCAGACGTGCCCATGAAGCTCCCACCGCACTTGGAATTGCATAGGACCAGAGAATGCAAAGCCGATGCTCCCATTCATACAGATACCATACAGTATTCTGGAGCATATGCTTCGATGGGTGTTGATAACAGTTTACAATTGGATTATTTTCGCAACAACTTTAAAATTGAAGTGATTGATCTAGGAGAGGATGACATTGAGTTTGACATGATTGGTATTGACCCGGCACTCGCTAATGCGTTTCGAAGAACCCTTATAGCTGAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTTGCTAACAATACGTCAATAATCCAAGATGAAGTGCTTGCCCATAGGTTAGGCCTCGTTCCGATTCATGTTGATCCAAGGCTTTTTGAGTACTCAGATGAAGACACACCAAATGAGAAGAATACCATTGTTTTTAGACTCCATGCTCGCTGTGAACGTGGAAAACCTCGTCTTACAGTGACATCAAAAGCATTGACGTGGTTACCTAATGGTAGTGAATTTCCTTTGGTATCGGACAAATCAGTTCCAAACTCAAAACCCAAAACCTATACTTCTTTTAGTTGCAGCCAAGATGCGCTACCAGAATTTTCCAAAAATCCAATTGGTCCGAAAGACAGTGATATTATAATTGCTAGACTTTGCCCGGGTCAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCCCCAGTGGCCACTGCTTGGTATAGGATGCTTCCAGAGGTTGTACTTTTGGAGGAGATAGAGGATGAGTTGGCTGAAGAACTCAAAAGTAAATGTCCTGTTGATGTATTTGACATTGAAGACATTGCTAATGGTAAGAAAAGGGCAACTGTAACACGCCCACGATCTTGCACATTATGTAGAGAATGCATAAGAGGAGAAGCATGGGAGAAACGTGTCTCATTGCGTCGTGTGAAGAATCATTTCATTTTTAAGATTGAATCAACCGGAGCTTTACCTCCTGAGGTGCTGTTCACTGAAGCTATAAAGATTTTGGAAGATAAGTGTGAACGTTTAATTGCTGAGCTCTCTTGA

Protein sequence

MSAKDKRSRDILGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTRECKADAPIHTDTIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAEVPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHARCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGPKDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIESTGALPPEVLFTEAIKILEDKCERLIAELS

Homology

[Close]

BLAST of MC06g2034 vs. ExPASy Swiss-Prot
Match: Q32L22 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=POLR1C PE=2 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 3.9e-77
Identity = 161/344 (46.80%), Postives = 213/344 (61.92%), Query Frame = 0


Query: 60  TIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAE 119
           T  + G Y+  G D++   D F  NF+++V+ + E+ +EFDM+GID A+ANAFRR L+AE
Sbjct: 26  TTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAE 85

Query: 120 VPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSD--EDTPNEKNTIVFRLH 179
           VPTMA+EKVLV NNTSI+QDE+LAHRLGL+PIH DPRLFEY +  ++   E +T+ FRL 
Sbjct: 86  VPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEGGTEIDTLQFRLQ 145

Query: 180 ARCERGKPRL-------------TVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSC 239
            RC R                   V ++ +TW+P G++  L                   
Sbjct: 146 VRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGNQADL------------------- 205

Query: 240 SQDALPEFSKNPIGPKDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLP 299
                  F +  I P   DI+IA+L PGQEI+L  H VKG+GK HAK+SPVATA YR+LP
Sbjct: 206 -------FPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLP 265

Query: 300 EVVLLEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKR 359
           ++ LLE +E E AEEL       V ++++I  GKK A V  PR  T  RE  R E  +K 
Sbjct: 266 DITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLDTFSREVFRNEKLKKV 325

Query: 360 VSLRRVKNHFIFKIESTGALPPEVLFTEAIKILEDKCERLIAEL 389
           V L RV++HFIF +ESTG LPP+VL +EAIK+L  KC+R + EL
Sbjct: 326 VRLARVRDHFIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLDEL 340

[Close]

BLAST of MC06g2034 vs. ExPASy Swiss-Prot
Match: O15160 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=POLR1C PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.1e-76
Identity = 159/344 (46.22%), Postives = 212/344 (61.63%), Query Frame = 0


Query: 60  TIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAE 119
           T  + G Y+  G D++   D F  NF+++V+ + E+ +EFDM+GID A+ANAFRR L+AE
Sbjct: 26  TTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAE 85

Query: 120 VPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSD--EDTPNEKNTIVFRLH 179
           VPTMA+EKVLV NNTSI+QDE+LAHRLGL+PIH DPRLFEY +  ++   E +T+ FRL 
Sbjct: 86  VPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTLQFRLQ 145

Query: 180 ARCERGKPRL-------------TVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSC 239
            RC R                   V ++ +TW+P G++  L                   
Sbjct: 146 VRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADL------------------- 205

Query: 240 SQDALPEFSKNPIGPKDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLP 299
                  F +  I P   DI+IA+L PGQEI+L  H VKG+GK HAK+SPVATA YR+LP
Sbjct: 206 -------FPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLP 265

Query: 300 EVVLLEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKR 359
           ++ LLE +E E AEEL       V +++++  GKK A V  PR  T  RE  R E  +K 
Sbjct: 266 DITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFRNEKLKKV 325

Query: 360 VSLRRVKNHFIFKIESTGALPPEVLFTEAIKILEDKCERLIAEL 389
           V L RV++H+IF +ESTG LPP+VL +EAIK+L  KC R + EL
Sbjct: 326 VRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340

[Close]

BLAST of MC06g2034 vs. ExPASy Swiss-Prot
Match: P52432 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN=Polr1c PE=1 SV=3)

HSP 1 Score: 285.0 bits (728), Expect = 1.2e-75
Identity = 164/340 (48.24%), Postives = 210/340 (61.76%), Query Frame = 0


Query: 60  TIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAE 119
           T  + G YA  G D++   + F  NF+++V+ + ED +EFDM+GID A+ANAFRR L+AE
Sbjct: 26  TTDFPGNYA--GYDDAWDQNRFEKNFRVDVVQMDEDTLEFDMVGIDAAIANAFRRILLAE 85

Query: 120 VPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSD--EDTPNEKNTIVFRLH 179
           VPTMA+EKVLV NNTSI+QDE+LAHRLGL+PI  DPRLFEY +  E+   E +T+ FRL 
Sbjct: 86  VPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEYRNQGEEEGTEIDTLQFRLQ 145

Query: 180 ARCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPN---------SKPKTYTSFSCSQDA 239
            RC R               PN ++     D S PN         ++  T+       D 
Sbjct: 146 VRCTRN--------------PNAAK-----DSSDPNELYVNHKVYTRHMTWVPLGNQADV 205

Query: 240 LPEFSKNPIGPKDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVL 299
            PE     I P   DI+IA+L PGQEI+L  H VKG+GK HAK+SPVATA YR+LP + L
Sbjct: 206 FPE---GTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAITL 265

Query: 300 LEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLR 359
           LE +E E AEEL       V ++E++  GKK A V   R  T  RE  R E  +K V L 
Sbjct: 266 LEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFSREIFRHEKLKKAVRLA 325

Query: 360 RVKNHFIFKIESTGALPPEVLFTEAIKILEDKCERLIAEL 389
           RV++H+IF +ESTG LPP+VL +EAIKIL  KC R + EL
Sbjct: 326 RVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340

[Close]

BLAST of MC06g2034 vs. ExPASy Swiss-Prot
Match: Q54SN4 (DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum OX=44689 GN=polr1c PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 7.8e-70
Identity = 148/352 (42.05%), Postives = 210/352 (59.66%), Query Frame = 0


Query: 40  PHLELHRTRECKADAPI-HTDTIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIE 99
           P+LE  RT+    ++ + +     YSGAY S+G DNS  L+ F+ NFKI ++    +++ 
Sbjct: 13  PNLENKRTKVTLTNSGVENARGTYYSGAYTSVGYDNSFNLNRFKENFKINILSESANELV 72

Query: 100 FDMIGIDPALANAFRRTLIAEVPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLF 159
           F+MIGID  +ANA RR +I+E+PTMAIEKV + NNTSI+QDEVLAHRLG++PI VDPR F
Sbjct: 73  FEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRLGMIPIKVDPRKF 132

Query: 160 EYSDEDTPNE----KNTIVFRLHARCER----GK-PRLTVTSKALTWLPNGSEFPLVSDK 219
            +     PN+    ++T++F+L  +CE+    GK    T  SK L W+P   +     ++
Sbjct: 133 NFK---LPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIWVPTQDQ-----EE 192

Query: 220 SVPNSKPKTYTSFSCSQDALPEFSKNPIGPKDSDIIIARLCPGQEIELEAHAVKGMGKTH 279
             PN + +                     P + DI I +L PGQ I+++ +  K +G+ H
Sbjct: 193 MFPNEEDRP-------------------RPMEDDIPIMKLRPGQVIDIQCYCEKNIGREH 252

Query: 280 AKWSPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVTRPRSC 339
            KWSPV TA YR+ P + + + I+ + A +L  KCP  VFDIED      +    RP  C
Sbjct: 253 IKWSPVCTASYRLQPVISVDKSIKGDKANQLLEKCPKKVFDIED----SGQVVAARPLDC 312

Query: 340 TLCRECIRGEAWEKRVSLRRVKNHFIFKIESTGALPPEVLFTEAIKILEDKC 382
           T+CRECIR   +E+ V + RV++HFIF IESTGAL    +F EAIKI  +KC
Sbjct: 313 TMCRECIRDPEFEQNVKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKC 333

[Close]

BLAST of MC06g2034 vs. ExPASy Swiss-Prot
Match: O94616 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc40 PE=1 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.4e-63
Identity = 138/349 (39.54%), Postives = 202/349 (57.88%), Query Frame = 0


Query: 52  ADAPIHTDTIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANA 111
           +D      ++ + G Y     DN   LD F+ N K+ +  L ++ + F++ GID ++ANA
Sbjct: 15  SDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFEISGIDASIANA 74

Query: 112 FRRTLIAEVPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEY------SDEDT 171
           FRR LIAE+PT+A E V + NNTSIIQDEVL+HR+GLVPI  DP +F++        E T
Sbjct: 75  FRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKWFQHPLPGQEAT 134

Query: 172 PNEKNTIVFRLHARCERGK---------PRLTVTSKA----LTWLPNGSEFPLVSDKSVP 231
             + +T+VF L+ +CE  K          RL V S+     L W P G +          
Sbjct: 135 HTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGRQ---------- 194

Query: 232 NSKPKTYTSFSCSQDALPEFSKNPIGPKDSDIIIARLCPGQEIELEAHAVKGMGKTHAKW 291
                              F+ NPI   + DI++A+L PGQEI+LEAHA+ G+G+ HAK+
Sbjct: 195 ----------------EERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAKF 254

Query: 292 SPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVTRPRSCTLC 351
           SPVATA YR+LP + +L  IE E A + +   P  V ++E+  +GKK+A V   R  T+ 
Sbjct: 255 SPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQARVADVRKDTVS 314

Query: 352 RECIRGEAWEKRVSLRRVKNHFIFKIESTGALPPEVLFTEAIKILEDKC 382
           REC+R   +  +V L RV++H++F +ESTG + P+VLF ++I +L+ KC
Sbjct: 315 RECLRHPEFADKVQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKSKC 335

[Close]

BLAST of MC06g2034 vs. NCBI nr
Match: XP_022158862.1 (LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and III subunit RPAC1-like [Momordica charantia])

HSP 1 Score: 777 bits (2007), Expect = 1.76e-283
Identity = 389/390 (99.74%), Postives = 389/390 (99.74%), Query Frame = 0


Query: 1   MSAKDKRSRDILGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTR-ECKADAPIHTD 60
           MSAKDKRSRDILGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTR ECKADAPIHTD
Sbjct: 1   MSAKDKRSRDILGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTRVECKADAPIHTD 60

Query: 61  TIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAE 120
           TIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAE
Sbjct: 61  TIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAE 120

Query: 121 VPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHAR 180
           VPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHAR
Sbjct: 121 VPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHAR 180

Query: 181 CERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGP 240
           CERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGP
Sbjct: 181 CERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGP 240

Query: 241 KDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEE 300
           KDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEE
Sbjct: 241 KDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEE 300

Query: 301 LKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIE 360
           LKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIE
Sbjct: 301 LKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIE 360

Query: 361 STGALPPEVLFTEAIKILEDKCERLIAELS 389
           STGALPPEVLFTEAIKILEDKCERLIAELS
Sbjct: 361 STGALPPEVLFTEAIKILEDKCERLIAELS 390

[Close]

BLAST of MC06g2034 vs. NCBI nr
Match: XP_022158557.1 (DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X1 [Momordica charantia] >XP_022158558.1 DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X1 [Momordica charantia] >XP_022158559.1 DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X1 [Momordica charantia])

HSP 1 Score: 707 bits (1826), Expect = 4.65e-256
Identity = 352/377 (93.37%), Postives = 362/377 (96.02%), Query Frame = 0


Query: 14  SKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTR-ECKADAPIHTDTIQYSGAYASMGV 73
           S+ EQ  GKEGIEWIMNLPDVPMKLPPHLE+ RTR ECKADAPIHTDTIQYSGAYASMGV
Sbjct: 4   SESEQVAGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYASMGV 63

Query: 74  DNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAEVPTMAIEKVLVAN 133
           DNSL+LDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRR LIAEVPTMAIEKVLVAN
Sbjct: 64  DNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVAN 123

Query: 134 NTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHARCERGKPRLTVTSK 193
           NTS+IQDEVLAHRLGL+PIHVDPRLFEYSD+DTPNEKNTIVFRLHARCERGKPRLTVTSK
Sbjct: 124 NTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTVTSK 183

Query: 194 ALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGPKDSDIIIARLCPG 253
            LTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQD LPEFS N IGPKD+DIIIARL PG
Sbjct: 184 LLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARLGPG 243

Query: 254 QEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVFDIE 313
           QEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL EEIEDELAEELK KCPVDVFDIE
Sbjct: 244 QEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVFDIE 303

Query: 314 DIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIESTGALPPEVLFTE 373
           DIANGKKRA V RPRSCTLCRECIRGEAWEKRVSLRRVK+HFIFKIESTGALPPEVLFTE
Sbjct: 304 DIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTE 363

Query: 374 AIKILEDKCERLIAELS 389
           A+KILEDKCERLIAELS
Sbjct: 364 AVKILEDKCERLIAELS 380

[Close]

BLAST of MC06g2034 vs. NCBI nr
Match: XP_038903474.1 (DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida] >XP_038903475.1 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida] >XP_038903476.1 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida])

HSP 1 Score: 692 bits (1786), Expect = 8.41e-250
Identity = 352/391 (90.03%), Postives = 367/391 (93.86%), Query Frame = 0


Query: 1   MSAKDKRSRDILGSKFEQ-CVGKEGIEWIMNLPDVPMKLPPHLELHRTR-ECKADAPIHT 60
           MS KDK   ++  S+ EQ  V KEGIEWIMNLPDVPMKLPPHLEL RTR ECKADAPIHT
Sbjct: 1   MSGKDKSLHNMSDSESEQEGVAKEGIEWIMNLPDVPMKLPPHLELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIA 120
           DTIQYSGA+ASMGVDNSL+LDYFRNNFKIEVIDL EDDIEFDMIGIDPALANAFRR LIA
Sbjct: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHA 180
           EVPTMAIEKVLVANNTSI+QDEVLAHRLGLVPIHVDPRLFEYSD+DTPNEKNTIVFRLHA
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLVPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180

Query: 181 RCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIG 240
            CERGK RLTVTSKALTWLPNGSEFPLVSDKSV NSKPKTYTSFSCSQD LPEFS NPIG
Sbjct: 181 CCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240

Query: 241 PKDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           PKDSDII+ARL PGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEI+DELAE
Sbjct: 241 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIKDELAE 300

Query: 301 ELKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKI 360
           ELK KCPV+VFDIEDIA GKKRATV RPR+CTLCRECIRG+ WEKRV+LRRVK+HFIFKI
Sbjct: 301 ELKKKCPVNVFDIEDIA-GKKRATVARPRACTLCRECIRGDVWEKRVALRRVKDHFIFKI 360

Query: 361 ESTGALPPEVLFTEAIKILEDKCERLIAELS 389
           ESTGALPPEVLFTEA+KILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 390

[Close]

BLAST of MC06g2034 vs. NCBI nr
Match: KAG7028290.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 691 bits (1784), Expect = 1.70e-249
Identity = 344/390 (88.21%), Postives = 364/390 (93.33%), Query Frame = 0


Query: 1   MSAKDKRSRDILGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTR-ECKADAPIHTD 60
           MS K K   ++  S  EQ VGKEGIEWIMNLPDVPMKLPPH+EL RTR ECKADAPIHTD
Sbjct: 1   MSGKGKNLHNMSESDSEQDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHTD 60

Query: 61  TIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAE 120
           TIQYSGAYAS+G+DNSL+LD FR NFKIEVIDL EDD+EFDMIGIDP+LANAFRR LIAE
Sbjct: 61  TIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIAE 120

Query: 121 VPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHAR 180
           VPTMAIEKVLVANNTSI+QDEVLAHRLGL+PI VDPRLFEYSD+DTPNEKNTIVFRLH R
Sbjct: 121 VPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHVR 180

Query: 181 CERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGP 240
           CERGKPRLT TSKALTWLPNGSEFPLVSDKSV N+KPKTYTSFSCSQD LPEF+ NPIGP
Sbjct: 181 CERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIGP 240

Query: 241 KDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEE 300
           KD DII+ARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAEE
Sbjct: 241 KDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAEE 300

Query: 301 LKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIE 360
           LK+KCPV+VFDIEDIANGKKRATV RPR+CTLCRECIRGEAWEKRVSLRRVK+HFIFKIE
Sbjct: 301 LKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKIE 360

Query: 361 STGALPPEVLFTEAIKILEDKCERLIAELS 389
           STGALPPEVLFTEA+KILEDKCERLIAELS
Sbjct: 361 STGALPPEVLFTEAVKILEDKCERLIAELS 390

[Close]

BLAST of MC06g2034 vs. NCBI nr
Match: XP_023540473.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo] >XP_023540474.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 689 bits (1779), Expect = 1.02e-248
Identity = 345/391 (88.24%), Postives = 365/391 (93.35%), Query Frame = 0


Query: 1   MSAKDKRSRDILGSKFE-QCVGKEGIEWIMNLPDVPMKLPPHLELHRTR-ECKADAPIHT 60
           MS KDK   ++  S  E + VGKEGIEWIMNLPDVPMKLPPH+EL RTR ECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEHEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIA 120
           DTIQYSGAYAS+G+DNSL+LD FR NFKIEVIDL EDD+EFDMIGIDP+LANAFRR LIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHA 180
           EVPTMAIEKVLVANNTSI+QDEVLAHRLGL+PI VDPRLFEYSD+DTPNEKNTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIG 240
           RCERGKPRLT TSKALTWLPNGSEFPLVSDKSV N+KPKTYTSFSCSQD LPEF+ NPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PKDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           PKD DII+ARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 301 ELKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKI 360
           ELK+KCPV+VFDIEDIANGKKRATV RPR+CTLCRECIRGEAWEKRVSLRRVK+HFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 361 ESTGALPPEVLFTEAIKILEDKCERLIAELS 389
           ESTGALPPEVLFTEA+KILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of MC06g2034 vs. ExPASy TrEMBL
Match: A0A6J1DY99 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3673 GN=LOC111025323 PE=3 SV=1)

HSP 1 Score: 777 bits (2007), Expect = 8.50e-284
Identity = 389/390 (99.74%), Postives = 389/390 (99.74%), Query Frame = 0


Query: 1   MSAKDKRSRDILGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTR-ECKADAPIHTD 60
           MSAKDKRSRDILGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTR ECKADAPIHTD
Sbjct: 1   MSAKDKRSRDILGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTRVECKADAPIHTD 60

Query: 61  TIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAE 120
           TIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAE
Sbjct: 61  TIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAE 120

Query: 121 VPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHAR 180
           VPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHAR
Sbjct: 121 VPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHAR 180

Query: 181 CERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGP 240
           CERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGP
Sbjct: 181 CERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGP 240

Query: 241 KDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEE 300
           KDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEE
Sbjct: 241 KDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEE 300

Query: 301 LKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIE 360
           LKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIE
Sbjct: 301 LKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIE 360

Query: 361 STGALPPEVLFTEAIKILEDKCERLIAELS 389
           STGALPPEVLFTEAIKILEDKCERLIAELS
Sbjct: 361 STGALPPEVLFTEAIKILEDKCERLIAELS 390

[Close]

BLAST of MC06g2034 vs. ExPASy TrEMBL
Match: A0A6J1DXI7 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3673 GN=LOC111025015 PE=3 SV=1)

HSP 1 Score: 707 bits (1826), Expect = 2.25e-256
Identity = 352/377 (93.37%), Postives = 362/377 (96.02%), Query Frame = 0


Query: 14  SKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTR-ECKADAPIHTDTIQYSGAYASMGV 73
           S+ EQ  GKEGIEWIMNLPDVPMKLPPHLE+ RTR ECKADAPIHTDTIQYSGAYASMGV
Sbjct: 4   SESEQVAGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYASMGV 63

Query: 74  DNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAEVPTMAIEKVLVAN 133
           DNSL+LDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRR LIAEVPTMAIEKVLVAN
Sbjct: 64  DNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVAN 123

Query: 134 NTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHARCERGKPRLTVTSK 193
           NTS+IQDEVLAHRLGL+PIHVDPRLFEYSD+DTPNEKNTIVFRLHARCERGKPRLTVTSK
Sbjct: 124 NTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTVTSK 183

Query: 194 ALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGPKDSDIIIARLCPG 253
            LTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQD LPEFS N IGPKD+DIIIARL PG
Sbjct: 184 LLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARLGPG 243

Query: 254 QEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVFDIE 313
           QEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL EEIEDELAEELK KCPVDVFDIE
Sbjct: 244 QEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVFDIE 303

Query: 314 DIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIESTGALPPEVLFTE 373
           DIANGKKRA V RPRSCTLCRECIRGEAWEKRVSLRRVK+HFIFKIESTGALPPEVLFTE
Sbjct: 304 DIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTE 363

Query: 374 AIKILEDKCERLIAELS 389
           A+KILEDKCERLIAELS
Sbjct: 364 AVKILEDKCERLIAELS 380

[Close]

BLAST of MC06g2034 vs. ExPASy TrEMBL
Match: A0A6J1FDA3 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=3662 GN=LOC111443051 PE=3 SV=1)

HSP 1 Score: 689 bits (1779), Expect = 4.93e-249
Identity = 345/391 (88.24%), Postives = 365/391 (93.35%), Query Frame = 0


Query: 1   MSAKDKRSRDILGSKFEQ-CVGKEGIEWIMNLPDVPMKLPPHLELHRTR-ECKADAPIHT 60
           MS KDK   ++  S  EQ  VGKEGIEWIMNLPDVPMKLPPH+EL RTR ECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIA 120
           DTIQYSGAYAS+G+DNSL+LD FR NFKIEVIDL EDD+EFDMIGIDP+LANAFRR LIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHA 180
           EVPTMAIEKVLVANNTSI+QDEVLAHRLGL+PI VDPRLFEYSD+DTPNEKNTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIG 240
           RCERGKPRLT TSKALTWLPNGSEFPLVSDKSV N+KPKTYTSFSCSQD LPEF+ NPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PKDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           PKD DII+ARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 300

Query: 301 ELKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKI 360
           ELK+KCPV+VFDIEDIANGKKRATV RPR+CTLCRECIRGEAWEKRVSLRRVK+HFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 361 ESTGALPPEVLFTEAIKILEDKCERLIAELS 389
           ESTGALPPEVLFTEA+KILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of MC06g2034 vs. ExPASy TrEMBL
Match: A0A6J1L269 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661 GN=LOC111498423 PE=3 SV=1)

HSP 1 Score: 688 bits (1776), Expect = 1.41e-248
Identity = 345/391 (88.24%), Postives = 364/391 (93.09%), Query Frame = 0


Query: 1   MSAKDKRSRDILGSKFEQ-CVGKEGIEWIMNLPDVPMKLPPHLELHRTR-ECKADAPIHT 60
           MS +DK    +  S  EQ  VGKEGIEWIMNLPDVPMKLPPH+EL RTR ECKADAPIHT
Sbjct: 1   MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIA 120
           DTIQYSGAYAS+G+DNSL+LD FR NFKIEVIDL EDD+EFDMIGIDP+LANAFRR LIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHA 180
           EVPTMAIEKVLVANNTSI+QDEVLAHRLGL+PI VDPRLFEYSD+DTPNEKNTIVFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIG 240
           RCERGKPRLT TS+ALTWLPNGSEFPLVSDKSV NSKPKTYTSFSCSQD LPEF+ NPIG
Sbjct: 181 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PKDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           PKD DII+ARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 301 ELKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKI 360
           ELK+KCPV+VFDIEDIANGKKRATV RPR+CTLCRECIRGEAWEKRVSLRRVK+HFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 361 ESTGALPPEVLFTEAIKILEDKCERLIAELS 389
           ESTGALPPEVLFTEA+KILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of MC06g2034 vs. ExPASy TrEMBL
Match: A0A1S4DX61 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis melo OX=3656 GN=LOC103491032 PE=3 SV=1)

HSP 1 Score: 668 bits (1724), Expect = 1.18e-240
Identity = 337/392 (85.97%), Postives = 360/392 (91.84%), Query Frame = 0


Query: 1   MSAKDKRSRDIL--GSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTR-ECKADAPIH 60
           MS KDK    ++      ++ VGKEGIEWIMNLPDVPMKLPPH+EL RTR ECK DAPIH
Sbjct: 1   MSGKDKNLHIMMTESESEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKGDAPIH 60

Query: 61  TDTIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLI 120
           TDTIQYSGA+ASMG DNSL+LD FRNNFKIEVI+L  DDIEFDMIGIDPALANAFRR LI
Sbjct: 61  TDTIQYSGAFASMGFDNSLRLDNFRNNFKIEVINLKGDDIEFDMIGIDPALANAFRRILI 120

Query: 121 AEVPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLH 180
           AEVPTMAIEKVL ANNTSI+QDEVLAHRLGL+PI VDPRLF+YSD+D PNE NTIVFRLH
Sbjct: 121 AEVPTMAIEKVLFANNTSIVQDEVLAHRLGLIPIRVDPRLFKYSDKDAPNENNTIVFRLH 180

Query: 181 ARCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPI 240
           ARCERGKPRLTV S+ALTWLPNGSEFPLVSDKS+PNSKP+TYTSFSCSQD LPEFSKN I
Sbjct: 181 ARCERGKPRLTVKSEALTWLPNGSEFPLVSDKSIPNSKPQTYTSFSCSQDKLPEFSKNSI 240

Query: 241 GPKDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELA 300
           GPKDSDII+ARL PGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEV+LLEEIEDELA
Sbjct: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVLLLEEIEDELA 300

Query: 301 EELKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFK 360
           EELK KCPV+VFDIEDIA GKKRATV RPR+CTLCRECIRG+AWEKRV+LRRVK+HFIFK
Sbjct: 301 EELKRKCPVNVFDIEDIA-GKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFK 360

Query: 361 IESTGALPPEVLFTEAIKILEDKCERLIAELS 389
           IESTGALPP VLFTEA+KILEDKCERLIAELS
Sbjct: 361 IESTGALPPNVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of MC06g2034 vs. TAIR 10
Match: AT1G60620.1 (RNA polymerase I subunit 43 )

HSP 1 Score: 494.6 bits (1272), Expect = 7.4e-140
Identity = 248/365 (67.95%), Postives = 291/365 (79.73%), Query Frame = 0


Query: 28  IMNLPDVPMKLPPHLELHRTR-ECKADAPIHTDTIQYSGAYASMGVDNSLQLDYFRNNFK 87
           I +LPDVP  LPPHLEL RTR  CK D+ IH   I +SGAY+SMGVDNS++L+ F  +FK
Sbjct: 23  IFDLPDVPTGLPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSVRLENFSEDFK 82

Query: 88  IEVIDLGEDDIEFDMIGIDPALANAFRRTLIAEVPTMAIEKVLVANNTSIIQDEVLAHRL 147
           ++VI L E D+ FDMIG+   +ANAFRR L+AE+P+MAIEKV VANNTS+IQDEVLAHRL
Sbjct: 83  VDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRL 142

Query: 148 GLVPIHVDPRLFEY-SDEDTPNEKNTIVFRLHARCERGKPRLTVTSKALTWLPNGSEFPL 207
           GL+PI  DPRLFEY S+ D PNEKNTIVF+LH +C +G PR  V +  L WLPNGSE  L
Sbjct: 143 GLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGSE--L 202

Query: 208 VSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGPKDSDIIIARLCPGQEIELEAHAVKGM 267
           + +     + PKTYTSF+ SQD+ PEF++NPI P   DI+IA+L PGQEIELEAHAVKG+
Sbjct: 203 IKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVKGI 262

Query: 268 GKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVTR 327
           GKTHAKWSPVATAWYRMLPEVVLL+E E + AEEL   CP  VFDIED+  G+KRATV R
Sbjct: 263 GKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATVAR 322

Query: 328 PRSCTLCRECIR-GEAWEKRVSLRRVKNHFIFKIESTGALPPEVLFTEAIKILEDKCERL 387
           PR C+LCRECIR G  WE +V LRRVKNHFIF IESTG+ PPEVLF EA+KILEDKCER+
Sbjct: 323 PRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDKCERV 382

Query: 388 IAELS 390
           I+ELS
Sbjct: 383 ISELS 385

[Close]

BLAST of MC06g2034 vs. TAIR 10
Match: AT1G60850.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 464.2 bits (1193), Expect = 1.1e-130
Identity = 235/360 (65.28%), Postives = 280/360 (77.78%), Query Frame = 0


Query: 28  IMNLPDVPMKLPPHLELHRTR-ECKADAPIHTDTIQYSGAY-ASMGVDNSLQLDYFRNNF 87
           I +LPDVP  LPPHL+  +TR   K +AP HT +  YSG Y +S   D++++L  F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 88  KIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAEVPTMAIEKVLVANNTSIIQDEVLAHR 147
           K++V+ L + D+EFDMIGID A ANAFRR LIAEVP+MAIEKVL+A NTS+I DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 148 LGLVPIHVDPRLFEY-SDEDTPNEKNTIVFRLHARCERGKPRLTVTSKALTWLPNGSEFP 207
           +GL+PI  DPRLFEY S+ D  NEKNTIVF+LH +C + +PRL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 208 LVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGPKDSDIIIARLCPGQEIELEAHAVKG 267
           L+ +     SKPKTYTSFSCSQD+LPEF+ NPI P D DI+IA+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 268 MGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVT 327
           +GKTHAKWSPV TAWYRM PEVVL  E+EDELAE L + CP +VFDIED+  GKKRATV 
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVA 314

Query: 328 RPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIESTGALPPEVLFTEAIKILEDKCERL 385
           +PR CTLC+EC+R +     V L  VKNHFIF IESTG+LPPEVLFTEA+KILE KCE +
Sbjct: 315 QPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372

[Close]

BLAST of MC06g2034 vs. TAIR 10
Match: AT1G60850.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 464.2 bits (1193), Expect = 1.1e-130
Identity = 235/360 (65.28%), Postives = 280/360 (77.78%), Query Frame = 0


Query: 28  IMNLPDVPMKLPPHLELHRTR-ECKADAPIHTDTIQYSGAY-ASMGVDNSLQLDYFRNNF 87
           I +LPDVP  LPPHL+  +TR   K +AP HT +  YSG Y +S   D++++L  F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 88  KIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAEVPTMAIEKVLVANNTSIIQDEVLAHR 147
           K++V+ L + D+EFDMIGID A ANAFRR LIAEVP+MAIEKVL+A NTS+I DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 148 LGLVPIHVDPRLFEY-SDEDTPNEKNTIVFRLHARCERGKPRLTVTSKALTWLPNGSEFP 207
           +GL+PI  DPRLFEY S+ D  NEKNTIVF+LH +C + +PRL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 208 LVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGPKDSDIIIARLCPGQEIELEAHAVKG 267
           L+ +     SKPKTYTSFSCSQD+LPEF+ NPI P D DI+IA+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 268 MGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVT 327
           +GKTHAKWSPV TAWYRM PEVVL  E+EDELAE L + CP +VFDIED+  GKKRATV 
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVA 314

Query: 328 RPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIESTGALPPEVLFTEAIKILEDKCERL 385
           +PR CTLC+EC+R +     V L  VKNHFIF IESTG+LPPEVLFTEA+KILE KCE +
Sbjct: 315 QPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372

[Close]

BLAST of MC06g2034 vs. TAIR 10
Match: AT1G60850.3 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 333.6 bits (854), Expect = 2.2e-91
Identity = 170/262 (64.89%), Postives = 204/262 (77.86%), Query Frame = 0


Query: 28  IMNLPDVPMKLPPHLELHRTR-ECKADAPIHTDTIQYSGAY-ASMGVDNSLQLDYFRNNF 87
           I +LPDVP  LPPHL+  +TR   K +AP HT +  YSG Y +S   D++++L  F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 88  KIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAEVPTMAIEKVLVANNTSIIQDEVLAHR 147
           K++V+ L + D+EFDMIGID A ANAFRR LIAEVP+MAIEKVL+A NTS+I DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 148 LGLVPIHVDPRLFEY-SDEDTPNEKNTIVFRLHARCERGKPRLTVTSKALTWLPNGSEFP 207
           +GL+PI  DPRLFEY S+ D  NEKNTIVF+LH +C + +PRL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 208 LVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGPKDSDIIIARLCPGQEIELEAHAVKG 267
           L+ +     SKPKTYTSFSCSQD+LPEF+ NPI P D DI+IA+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 268 MGKTHAKWSPVATAWYRMLPEV 287
           +GKTHAKWSPV TAWYRM PEV
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEV 274

[Close]

BLAST of MC06g2034 vs. TAIR 10
Match: AT2G15430.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 136.3 bits (342), Expect = 5.1e-32
Identity = 100/311 (32.15%), Postives = 160/311 (51.45%), Query Frame = 0


Query: 86  KIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAEVPTMAIEKVLVANNTSIIQDEVLAHR 145
           KI++ +L +D  +F++   D ++ANA RR +I+EVPT+AI+ V +  N+S++ DE +AHR
Sbjct: 11  KIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 70

Query: 146 LGLVPIHVD-------PRLFEYSDEDTPNEKNTIVFRLHARCERGKPRLTVTSKALTWLP 205
           LGL+P+  +        R  +  D D   E  ++ FRL ++C   +  L VTS+ L    
Sbjct: 71  LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQ-TLDVTSRDLY--- 130

Query: 206 NGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGPKDSDIIIARLCPGQEIELE 265
                      + P   P  +T  S   D+           +   III +L  GQE++L 
Sbjct: 131 ----------SADPTVTPVDFTIDSSVSDS----------SEHKGIIIVKLRRGQELKLR 190

Query: 266 AHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELK----SKCPVDVFDIEDI 325
           A A KG+GK HAKWSP AT  +   P++++ E++ D L++E K       P  VF ++ +
Sbjct: 191 AIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPV 250

Query: 326 ANGKKRATVTRPRSCTLCRECI-RGEAWEK--RVSLRRVKNHFIFKIESTGALPPEVLFT 383
               ++  V  P + T   E I + EA  K   + +    + FIF +ESTGA+    L  
Sbjct: 251 T---RQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVL 294

The following BLAST results are available for this feature:

BLAST of MC06g2034 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32L22	3.9e-77	46.80	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=PO...	[more]
O15160	1.1e-76	46.22	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=...	[more]
P52432	1.2e-75	48.24	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN...	[more]
Q54SN4	7.8e-70	42.05	DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum...	[more]
O94616	2.4e-63	39.54	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pomb...	[more]

BLAST of MC06g2034 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158862.1	1.76e-283	99.74	LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and III subunit RPAC1-like [...	[more]
XP_022158557.1	4.65e-256	93.37	DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X1 [Momordica ...	[more]
XP_038903474.1	8.41e-250	90.03	DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispi...	[more]
KAG7028290.1	1.70e-249	88.21	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita argyrosperma sub...	[more]
XP_023540473.1	1.02e-248	88.24	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo...	[more]

BLAST of MC06g2034 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DY99	8.50e-284	99.74	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3...	[more]
A0A6J1DXI7	2.25e-256	93.37	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3...	[more]
A0A6J1FDA3	4.93e-249	88.24	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=36...	[more]
A0A6J1L269	1.41e-248	88.24	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661...	[more]
A0A1S4DX61	1.18e-240	85.97	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis melo OX=3656 GN=...	[more]

BLAST of MC06g2034 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60620.1	7.4e-140	67.95	RNA polymerase I subunit 43	[more]
AT1G60850.2	1.1e-130	65.28	DNA-directed RNA polymerase family protein	[more]
AT1G60850.1	1.1e-130	65.28	DNA-directed RNA polymerase family protein	[more]
AT1G60850.3	2.2e-91	64.89	DNA-directed RNA polymerase family protein	[more]
AT2G15430.1	5.1e-32	32.15	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 374..389
None	No IPR available	PANTHER	PTHR11800:SF14	BNAA01G22480D PROTEIN	coord: 23..389
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 23..389
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 96..387 e-value: 1.6E-107 score: 373.2
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 98..381 e-value: 2.1E-25 score: 89.3
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 122..270 e-value: 7.9E-105 score: 352.2
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 121..274
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 129..273 e-value: 8.8E-24 score: 84.0
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 87..380 e-value: 7.9E-105 score: 352.2
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 83..388
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 110..150
IPR033901	DNA-directed RNA polymerases I and III subunit AC40	CDD	cd07032	RNAP_I_II_AC40	coord: 85..387 e-value: 1.22961E-142 score: 405.054

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g2034.1	MC06g2034.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006360	transcription by RNA polymerase I
biological_process	GO:0006383	transcription by RNA polymerase III
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001054	RNA polymerase I activity
molecular_function	GO:0001056	RNA polymerase III activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity