MC06g1992 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g1992
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC06: 27410260 .. 27410589 (-)
RNA-Seq ExpressionMC06g1992
SyntenyMC06g1992
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGAAGTTACTTGTGATGCAGCTTCCAGCACTCTCTTCATCTTCTGCTTCTGCAATTTCATCATTCTCACCATTCTCTTCTTCTCCAGTTTTGATGATGATATTAGCCTTAAGCCCCTTTCTATTGTCATTCACTCCAACACAGATATGCAACAATCTGTATGTCAAAATCTCATGCTTCAACAACATCCCATGATTGATGTGGCTGAGCTGCCAGTGACCCAAAATGAATCAGAATCAGAATCAGATGATGATTTTAGGAGAAGAGTGGAGGAATTTATTGAAACGGTTAACAGGGGGTGGAAAGAAGAAAGGCAGAGCACCTCGAGA

mRNA sequence

TTTGAAGTTACTTGTGATGCAGCTTCCAGCACTCTCTTCATCTTCTGCTTCTGCAATTTCATCATTCTCACCATTCTCTTCTTCTCCAGTTTTGATGATGATATTAGCCTTAAGCCCCTTTCTATTGTCATTCACTCCAACACAGATATGCAACAATCTGTATGTCAAAATCTCATGCTTCAACAACATCCCATGATTGATGTGGCTGAGCTGCCAGTGACCCAAAATGAATCAGAATCAGAATCAGATGATGATTTTAGGAGAAGAGTGGAGGAATTTATTGAAACGGTTAACAGGGGGTGGAAAGAAGAAAGGCAGAGCACCTCGAGA

Coding sequence (CDS)

TTTGAAGTTACTTGTGATGCAGCTTCCAGCACTCTCTTCATCTTCTGCTTCTGCAATTTCATCATTCTCACCATTCTCTTCTTCTCCAGTTTTGATGATGATATTAGCCTTAAGCCCCTTTCTATTGTCATTCACTCCAACACAGATATGCAACAATCTGTATGTCAAAATCTCATGCTTCAACAACATCCCATGATTGATGTGGCTGAGCTGCCAGTGACCCAAAATGAATCAGAATCAGAATCAGATGATGATTTTAGGAGAAGAGTGGAGGAATTTATTGAAACGGTTAACAGGGGGTGGAAAGAAGAAAGGCAGAGCACCTCGAGA

Protein sequence

FEVTCDAASSTLFIFCFCNFIILTILFFSSFDDDISLKPLSIVIHSNTDMQQSVCQNLMLQQHPMIDVAELPVTQNESESESDDDFRRRVEEFIETVNRGWKEERQSTSR
Homology
BLAST of MC06g1992 vs. NCBI nr
Match: XP_031742158.1 (probable ATP-dependent RNA helicase ddx52 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.57e-19
Identity = 65/139 (46.76%), Postives = 79/139 (56.83%), Query Frame = 0

Query: 2   EVTCDAASSTLFIFCFCNFIILTILFFS-----SFD--DDISLKPLSIVIHSNTDMQQSV 61
           E+  DA SSTLFIFCF N IIL I F S     SFD  +D +  PLSIVIHS T+  +  
Sbjct: 7   ELAADATSSTLFIFCFFNLIILVIFFTSRPATSSFDQQNDDNDMPLSIVIHSKTNTTE-- 66

Query: 62  CQNLMLQQHPMIDVAELPVTQNESE-------------------------SESDDDFRRR 108
            QN MLQ+ P++ V E+  +QNE+E                          E +DDFR+R
Sbjct: 67  -QNSMLQKDPIVGVCEVIESQNETERCVNFNCNVDVEQSDDDNEDDYEDEDEDEDDFRQR 126

BLAST of MC06g1992 vs. NCBI nr
Match: KAG6605668.1 (hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.0 bits (214), Expect = 3.82e-19
Identity = 66/139 (47.48%), Postives = 80/139 (57.55%), Query Frame = 0

Query: 2   EVTCDAASSTLFIFCFCNFIILTILFFS-----SFD----DDISLKPLSIVIHSNTDMQQ 61
           E+  +AASSTLFIFC  N I+L ILF S     S D    DD+   PLSIVIHSNT+ QQ
Sbjct: 7   ELAAEAASSTLFIFCIFNLILLIILFTSRPVSSSSDHQNHDDV---PLSIVIHSNTNAQQ 66

Query: 62  SVCQNLMLQQHPMIDVAELPVTQNE---------------------SESESDDDFRRRVE 110
               N MLQ++ ++DV  +  T NE                      E E ++DF+RRVE
Sbjct: 67  ----NFMLQKNAIVDVCAVTETLNEPDFSDSVEGSGDDHEDEDEDEDEVEDEEDFKRRVE 126

BLAST of MC06g1992 vs. NCBI nr
Match: KAG8660389.1 (hypothetical protein MANES_02G153600v8 [Manihot esculenta])

HSP 1 Score: 66.2 bits (160), Expect = 5.00e-11
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 0

Query: 2   EVTCDAASSTLFIFCFCNFIILTILFFSS----FDDDISLKPLSIVIHSNTDMQQSVCQN 61
           E    AAS++LFIFCFCN IIL +L  +S    F    S  P+  V +   ++ QS    
Sbjct: 32  ETITQAASNSLFIFCFCNLIILIVLITASKPASFCYQKSQVPVLTVANGYINVNQSTTTK 91

Query: 62  LMLQQHPMIDVAELPVTQNESESESDDDFRRRVEEFIETVNRGWKEE 104
             L  +   + AE  +  +E+ ++ DD+FRR+VEEFI+ +NRGWKEE
Sbjct: 92  HFLDVNKSSNAAEARI--HENANDEDDEFRRKVEEFIDKINRGWKEE 136

BLAST of MC06g1992 vs. NCBI nr
Match: XP_030950213.1 (uncharacterized protein LOC115974139 [Quercus lobata])

HSP 1 Score: 63.5 bits (153), Expect = 4.97e-10
Identity = 49/129 (37.98%), Postives = 72/129 (55.81%), Query Frame = 0

Query: 2   EVTCDAASSTLFIFCFCNFIILTILFFSSFDDDISLK---PLSIVIHSNTDMQQ------ 61
           E+   AAS++LFIFCFCN II  +L  S    ++  +   PLS+VI+++T+ +Q      
Sbjct: 7   ELITQAASNSLFIFCFCNLIIAILLVVSKSSSELGQQGEIPLSVVINTSTNHKQGTYGKQ 66

Query: 62  ---------SVCQNLMLQQHPMIDVAELP-VTQNESESESDDD-FRRRVEEFIETVNRGW 110
                    +V +    ++ P++D  E   +  N+ E E DDD  RRRVEEFIE VN+ W
Sbjct: 67  VFDDDKMLTNVDEVSYFREAPVVDKEESGNIRHNKDEEEDDDDELRRRVEEFIEKVNKEW 126

BLAST of MC06g1992 vs. NCBI nr
Match: XP_024947996.1 (uncharacterized protein LOC112495610 [Citrus sinensis])

HSP 1 Score: 62.4 bits (150), Expect = 1.42e-09
Identity = 49/124 (39.52%), Postives = 66/124 (53.23%), Query Frame = 0

Query: 6   DAASSTLFIFCFCNFIILTIL----FFSSFDDD--------------ISLKPLSIVIHSN 65
           +AAS+++FIFCFCN II+ IL    + SSFD +               S K  +I IHS 
Sbjct: 11  EAASNSIFIFCFCNLIIVMILMGSKYSSSFDQESEEHAPVLSINSYAYSNKQETISIHSF 70

Query: 66  TDMQQSVCQNLM---LQQHPMIDVAELPVTQNESESESDDDFRRRVEEFIETVNRGWKEE 108
              ++S+    +   LQ+    D  E    +N    + DD+ RRR EEFIE VNRGWKEE
Sbjct: 71  DGNKKSMAARELSNDLQEEHADDQEEERNFENSESKDDDDELRRRFEEFIEKVNRGWKEE 130

BLAST of MC06g1992 vs. ExPASy TrEMBL
Match: A0A2N9GM45 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28564 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.56e-12
Identity = 52/128 (40.62%), Postives = 69/128 (53.91%), Query Frame = 0

Query: 2   EVTCDAASSTLFIFCFCNFIILTILFFSSFDDDISLK---PLSIVIHSNTDMQ------Q 61
           E+   AAS++LFIFCFCN II  +L  S    D   +   PLS+VI+++T+ +      Q
Sbjct: 7   ELITQAASNSLFIFCFCNLIIAILLVASKSSSDFGQQGEIPLSVVINTSTNHKHVTNGKQ 66

Query: 62  SVCQNLMLQQHPMIDVA-ELPVTQNES---------ESESDDDFRRRVEEFIETVNRGWK 110
               N ML+    +  + E PV   E          E E DD+ RRRVEEFIE VN+GWK
Sbjct: 67  VFFYNKMLRNFDEVSYSHEAPVADKEESGNNNNKKDEDEDDDELRRRVEEFIEKVNKGWK 126

BLAST of MC06g1992 vs. ExPASy TrEMBL
Match: A0A2C9WFP2 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G153600 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.34e-11
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 0

Query: 2   EVTCDAASSTLFIFCFCNFIILTILFFSS----FDDDISLKPLSIVIHSNTDMQQSVCQN 61
           E    AAS++LFIFCFCN IIL +L  +S    F    S  P+  V +   ++ QS    
Sbjct: 6   ETITQAASNSLFIFCFCNLIILIVLITASKPASFCYQKSQVPVLTVANGYINVNQSTTTK 65

Query: 62  LMLQQHPMIDVAELPVTQNESESESDDDFRRRVEEFIETVNRGWKEE 104
             L  +   + AE  +  +E+ ++ DD+FRR+VEEFI+ +NRGWKEE
Sbjct: 66  HFLDVNKSSNAAEARI--HENANDEDDEFRRKVEEFIDKINRGWKEE 110

BLAST of MC06g1992 vs. ExPASy TrEMBL
Match: A0A7N2QYC4 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.41e-10
Identity = 49/129 (37.98%), Postives = 72/129 (55.81%), Query Frame = 0

Query: 2   EVTCDAASSTLFIFCFCNFIILTILFFSSFDDDISLK---PLSIVIHSNTDMQQ------ 61
           E+   AAS++LFIFCFCN II  +L  S    ++  +   PLS+VI+++T+ +Q      
Sbjct: 7   ELITQAASNSLFIFCFCNLIIAILLVVSKSSSELGQQGEIPLSVVINTSTNHKQGTYGKQ 66

Query: 62  ---------SVCQNLMLQQHPMIDVAELP-VTQNESESESDDD-FRRRVEEFIETVNRGW 110
                    +V +    ++ P++D  E   +  N+ E E DDD  RRRVEEFIE VN+ W
Sbjct: 67  VFDDDKMLTNVDEVSYFREAPVVDKEESGNIRHNKDEEEDDDDELRRRVEEFIEKVNKEW 126

BLAST of MC06g1992 vs. ExPASy TrEMBL
Match: A0A438FCZ0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_114813 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.88e-10
Identity = 44/126 (34.92%), Postives = 65/126 (51.59%), Query Frame = 0

Query: 2   EVTCDAASSTLFIFCFCNFIILTILFFS----SFDDDISLKPLSIVIH-SNTDMQQSVCQ 61
           E+   A S++LFIFCFCN II  +L  S    S+ D  S  P S+V +   +D + +  +
Sbjct: 7   ELITQATSNSLFIFCFCNLIIAILLIGSLKPSSYSDQGSAIPFSVVTNVDKSDKETANAE 66

Query: 62  NLMLQQHPMIDVAELP------------------VTQNESESESDDDFRRRVEEFIETVN 104
           +L  +   ++D +E+                    +Q E E E DD+ RRR EEFIE +N
Sbjct: 67  DLFKESRVLMDASEVSDAEKGVVVDDNKEDDSEDSSQEEEEEEDDDELRRRAEEFIEKIN 126

BLAST of MC06g1992 vs. ExPASy TrEMBL
Match: A0A2C9VSQ1 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G137900 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.46e-09
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 0

Query: 1   FEVTCDAASSTLFIFCFCNFIILTILFFSSFDDDISLKPLSIVIHSNTDMQQSVCQNLML 60
           FE+    AS++LFIFCFCN II+ IL  S     ++ +   +   S    Q++V ++  +
Sbjct: 6   FELITQVASNSLFIFCFCNLIIVVILVGSK-PSTVNGQESQVRFSSAYRRQETVAKHSAI 65

Query: 61  QQHPMI-DVAELPVTQ--------NESESESDDDFRRRVEEFIETVNRGWKEERQSTS 109
           +   MI DV +    Q        N+  ++ +D+FRRRVEEFI+ VNRGWK E   TS
Sbjct: 66  EGTKMIIDVTQASNAQKAPATAGSNKENADDNDEFRRRVEEFIDKVNRGWKAESMRTS 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_031742158.11.57e-1946.76probable ATP-dependent RNA helicase ddx52 [Cucumis sativus][more]
KAG6605668.13.82e-1947.48hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG8660389.15.00e-1141.12hypothetical protein MANES_02G153600v8 [Manihot esculenta][more]
XP_030950213.14.97e-1037.98uncharacterized protein LOC115974139 [Quercus lobata][more]
XP_024947996.11.42e-0939.52uncharacterized protein LOC112495610 [Citrus sinensis][more]
Match NameE-valueIdentityDescription
A0A2N9GM457.56e-1240.63Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28564 PE=4 SV=1[more]
A0A2C9WFP21.34e-1141.12Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G153600 PE=4 SV=... [more]
A0A7N2QYC42.41e-1037.98Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A438FCZ06.88e-1034.92Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_114813 PE=4 SV=1[more]
A0A2C9VSQ11.46e-0938.14Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G137900 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36595TRANSMEMBRANE PROTEINcoord: 2..54
coord: 75..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g1992.1MC06g1992.1mRNA