MC06g1886 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g1886
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RRM domain-containing protein
Location	MC06: 26245403 .. 26246067 (+)
RNA-Seq Expression	MC06g1886
Synteny	MC06g1886

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGATTCAAGTGGTTTTGTTGATGAGAAGTGCGAAAGCAAACTTTATATTGGTAATCTTGACCTCAGAATTACAGAGTAAGGAAAATTATTGTCCCACCCTCTGCAATGTATTTGTCTTCTAGTTTTCCTTTTCTATATTGAAGTTTGTATCTACTTGTTTCAGAGCGACTCTCATTAAAATGTTCTCTCCTTTTGGAAAGATAATATCTGAGGATTTCCTGTGGCACACTCGCGGTCCGAAGCGTGGAGAGCCACGGGGATTCGCTTTCATTGAATACAGCTCCAAGGAGGTAAGTTGCTTGGTTAGCCACTTCATTGCCTTTGTCAAGCAATTCCTTATTTTTGCCTGTAAAAGTGAGTATGCAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTTGTGGTCGCCCGTTGGTTGTACGCCTTGCAAGTGAGAAGTGCATGATCGACACAACAAAAAGTATTTCCCGAGCAGCAGGCGAGTCGAGCAAATCGAGACTTGGTGGCAGCAATTATGGACAGATGACTCGCACTGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTCTGGAAGGAGAGGCGGAGAGCTCGAGCTCTCATGTGAAAAAACAGAAGCAAGATAACATCAGTTGCAGAGATAATATTGATAAG

mRNA sequence

CAGGATTCAAGTGGTTTTGTTGATGAGAAGTGCGAAAGCAAACTTTATATTGGTAATCTTGACCTCAGAATTACAGAAGCGACTCTCATTAAAATGTTCTCTCCTTTTGGAAAGATAATATCTGAGGATTTCCTGTGGCACACTCGCGGTCCGAAGCGTGGAGAGCCACGGGGATTCGCTTTCATTGAATACAGCTCCAAGGAGGTAAGTTGCTTGGTTAGCCACTTCATTGCCTTTGTCAAGCAATTCCTTATTTTTGCCTGTAAAAGTATGCAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTTGTGGTCGCCCGTTGGTTGTACGCCTTGCAAGTGAGAAGTGCATGATCGACACAACAAAAAGTATTTCCCGAGCAGCAGGCGAGTCGAGCAAATCGAGACTTGGTGGCAGCAATTATGGACAGATGACTCGCACTGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTCTGGAAGGAGAGGCGGAGAGCTCGAGCTCTCATGTGAAAAAACAGAAGCAAGATAACATCAGTTGCAGAGATAATATTGATAAG

Coding sequence (CDS)

CAGGATTCAAGTGGTTTTGTTGATGAGAAGTGCGAAAGCAAACTTTATATTGGTAATCTTGACCTCAGAATTACAGAAGCGACTCTCATTAAAATGTTCTCTCCTTTTGGAAAGATAATATCTGAGGATTTCCTGTGGCACACTCGCGGTCCGAAGCGTGGAGAGCCACGGGGATTCGCTTTCATTGAATACAGCTCCAAGGAGGTAAGTTGCTTGGTTAGCCACTTCATTGCCTTTGTCAAGCAATTCCTTATTTTTGCCTGTAAAAGTATGCAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTTGTGGTCGCCCGTTGGTTGTACGCCTTGCAAGTGAGAAGTGCATGATCGACACAACAAAAAGTATTTCCCGAGCAGCAGGCGAGTCGAGCAAATCGAGACTTGGTGGCAGCAATTATGGACAGATGACTCGCACTGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTCTGGAAGGAGAGGCGGAGAGCTCGAGCTCTCATGTGAAAAAACAGAAGCAAGATAACATCAGTTGCAGAGATAATATTGATAAG

Protein sequence

QDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCLVSHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSHVKKQKQDNISCRDNIDK

Homology

[Close]

BLAST of MC06g1886 vs. ExPASy Swiss-Prot
Match: Q6PBM8 (Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.9e-11
Identity = 48/159 (30.19%), Postives = 74/159 (46.54%), Query Frame = 0


Query: 14  KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCLV 73
           +L+IGN+D +ITE  L+K+   FGK+   DFL+H  GP  G+PRG+ F+ + +KE     
Sbjct: 24  RLWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKE----- 83

Query: 74  SHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAG 133
                              EA+ A + ++GKLA  + LVVR A  +         +  A 
Sbjct: 84  -------------------EAERAIQCLNGKLALSKKLVVRWAHAQRFEPFRGEKNMPAS 143

Query: 134 ESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSS 173
               S         ++   KI AI+ KL+ +E   +  S
Sbjct: 144 LEPSSSEAEDLPTSLSVNAKIRAIEAKLQMMEENPDDYS 158

[Close]

BLAST of MC06g1886 vs. ExPASy Swiss-Prot
Match: Q9CR83 (Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 50/155 (32.26%), Postives = 76/155 (49.03%), Query Frame = 0


Query: 14  KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCLV 73
           +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K      
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETK------ 85

Query: 74  SHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLASEKCM----IDTTKSIS 133
                             QEA+ A + ++GKLA  + LVVR A  +          K + 
Sbjct: 86  ------------------QEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILP 145

Query: 134 RAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRAL 165
            +   SS +    SN   ++ T KI AI+ KL+ +
Sbjct: 146 ISLEPSSSTEPAQSN---LSVTAKIKAIEAKLKMM 153

[Close]

BLAST of MC06g1886 vs. ExPASy Swiss-Prot
Match: Q96H35 (Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 48/152 (31.58%), Postives = 73/152 (48.03%), Query Frame = 0


Query: 14  KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCLV 73
           +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K      
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETK------ 85

Query: 74  SHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLA-SEKCMIDTTKSISRAA 133
                             QEA+ A + ++GKLA  + LVVR A ++    D  K+     
Sbjct: 86  ------------------QEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILP 145

Query: 134 GESSKSRLGGSNYGQMTRTDKIAAIKNKLRAL 165
                S         ++ T KI AI+ KL+ +
Sbjct: 146 ISLEPSSSTEPTQSNLSVTAKIKAIEAKLKMM 153

[Close]

BLAST of MC06g1886 vs. ExPASy Swiss-Prot
Match: Q5R6W3 (Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 48/152 (31.58%), Postives = 73/152 (48.03%), Query Frame = 0


Query: 14  KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCLV 73
           +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K      
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETK------ 85

Query: 74  SHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLA-SEKCMIDTTKSISRAA 133
                             QEA+ A + ++GKLA  + LVVR A ++    D  K+     
Sbjct: 86  ------------------QEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILP 145

Query: 134 GESSKSRLGGSNYGQMTRTDKIAAIKNKLRAL 165
                S         ++ T KI AI+ KL+ +
Sbjct: 146 ISLEPSSSTEPTQSNLSVTAKIKAIEAKLKMM 153

[Close]

BLAST of MC06g1886 vs. ExPASy Swiss-Prot
Match: Q66J99 (Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.5e-10
Identity = 46/157 (29.30%), Postives = 74/157 (47.13%), Query Frame = 0


Query: 14  KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCLV 73
           +L+IGN+D +ITE  L+K+   FGK+   DFL+H  GP  G+PRG+ F+ + +K      
Sbjct: 26  RLWIGNVDPKITEYHLLKLLQKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFETK------ 85

Query: 74  SHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLAS------EKCMIDTTKS 133
                              EA+ A   ++GK+A  + LVVR A       + C  +    
Sbjct: 86  ------------------AEAERAIHCLNGKMALSKKLVVRWAHAQIKRYDNCKNEKVLP 145

Query: 134 ISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRAL 165
           IS     S++          ++ + KI AI+ KL+ +
Sbjct: 146 ISLEPSSSTE-----PTQSTLSVSAKIKAIEAKLKMM 153

[Close]

BLAST of MC06g1886 vs. NCBI nr
Match: XP_022157813.1 (probable RNA-binding protein 18 isoform X3 [Momordica charantia])

HSP 1 Score: 308 bits (790), Expect = 6.89e-105
Identity = 165/190 (86.84%), Postives = 165/190 (86.84%), Query Frame = 0


Query: 2   DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61
           DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 4   DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 63

Query: 62  IEYSSKEVSCLVSHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLASEKCM 121
           IEYSSKE                        EAKLAKEKMHGKLACGRPLVVRLASEKCM
Sbjct: 64  IEYSSKE------------------------EAKLAKEKMHGKLACGRPLVVRLASEKCM 123

Query: 122 IDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSHVKKQKQD 181
           IDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSS VKKQKQD
Sbjct: 124 IDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQD 169

Query: 182 NISCRDNIDK 191
           NISCRDNIDK
Sbjct: 184 NISCRDNIDK 169

[Close]

BLAST of MC06g1886 vs. NCBI nr
Match: XP_022157809.1 (probable RNA-binding protein 18 isoform X2 [Momordica charantia])

HSP 1 Score: 309 bits (791), Expect = 9.06e-105
Identity = 165/191 (86.39%), Postives = 166/191 (86.91%), Query Frame = 0


Query: 1   QDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 60
           +DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 21  KDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 80

Query: 61  FIEYSSKEVSCLVSHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLASEKC 120
           FIEYSSKE                        EAKLAKEKMHGKLACGRPLVVRLASEKC
Sbjct: 81  FIEYSSKE------------------------EAKLAKEKMHGKLACGRPLVVRLASEKC 140

Query: 121 MIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSHVKKQKQ 180
           MIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSS VKKQKQ
Sbjct: 141 MIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQ 187

Query: 181 DNISCRDNIDK 191
           DNISCRDNIDK
Sbjct: 201 DNISCRDNIDK 187

[Close]

BLAST of MC06g1886 vs. NCBI nr
Match: XP_022157798.1 (probable RNA-binding protein 18 isoform X1 [Momordica charantia] >XP_022157801.1 probable RNA-binding protein 18 isoform X1 [Momordica charantia])

HSP 1 Score: 308 bits (790), Expect = 3.77e-104
Identity = 165/190 (86.84%), Postives = 165/190 (86.84%), Query Frame = 0


Query: 2   DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61
           DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 53  DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 112

Query: 62  IEYSSKEVSCLVSHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLASEKCM 121
           IEYSSKE                        EAKLAKEKMHGKLACGRPLVVRLASEKCM
Sbjct: 113 IEYSSKE------------------------EAKLAKEKMHGKLACGRPLVVRLASEKCM 172

Query: 122 IDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSHVKKQKQD 181
           IDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSS VKKQKQD
Sbjct: 173 IDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQD 218

Query: 182 NISCRDNIDK 191
           NISCRDNIDK
Sbjct: 233 NISCRDNIDK 218

[Close]

BLAST of MC06g1886 vs. NCBI nr
Match: XP_031741097.1 (probable RNA-binding protein 18 isoform X1 [Cucumis sativus])

HSP 1 Score: 299 bits (766), Expect = 6.70e-101
Identity = 161/191 (84.29%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 2   DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61
           DS+GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 2   DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61

Query: 62  IEYSSKEVSCLVSHFIAFVKQFLIFACK-SMQEAKLAKEKMHGKLACGRPLVVRLASEKC 121
           IEYSSKEVSCLV   IA VKQ LIFACK SMQEAKLAKEKMHGKLACGRPLVVRLASEK 
Sbjct: 62  IEYSSKEVSCLVYSLIASVKQLLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEKL 121

Query: 122 MIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSHVKKQKQ 181
           M +TT   SR A ES KSRLGGS+YGQ+TR+DKIAAIKNKLRALEG  ESSS  VKK KQ
Sbjct: 122 MTNTTNDTSRTASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSS--VKKPKQ 181

Query: 182 DNISCRDNIDK 191
           DNIS +D+ DK
Sbjct: 182 DNISYKDHNDK 190

[Close]

BLAST of MC06g1886 vs. NCBI nr
Match: XP_008437528.1 (PREDICTED: probable RNA-binding protein 18 [Cucumis melo])

HSP 1 Score: 260 bits (665), Expect = 6.84e-86
Identity = 142/190 (74.74%), Postives = 152/190 (80.00%), Query Frame = 0


Query: 2   DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61
           DS+GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 2   DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61

Query: 62  IEYSSKEVSCLVSHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLASEKCM 121
           IEYSSKE                        EAKLAKEKMHGKLACGRPLVVRLASEK M
Sbjct: 62  IEYSSKE------------------------EAKLAKEKMHGKLACGRPLVVRLASEKLM 121

Query: 122 IDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSHVKKQKQD 181
           ++T    S+AA ES KSRLGGS+YGQ+TR+DKIAAIKNKLRALEG  ESSS  VKK KQD
Sbjct: 122 VNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSS--VKKPKQD 165

Query: 182 NISCRDNIDK 191
           NIS +D+IDK
Sbjct: 182 NISFKDHIDK 165

[Close]

BLAST of MC06g1886 vs. ExPASy TrEMBL
Match: A0A6J1DUD9 (probable RNA-binding protein 18 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 308 bits (790), Expect = 3.34e-105
Identity = 165/190 (86.84%), Postives = 165/190 (86.84%), Query Frame = 0


Query: 2   DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61
           DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 4   DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 63

Query: 62  IEYSSKEVSCLVSHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLASEKCM 121
           IEYSSKE                        EAKLAKEKMHGKLACGRPLVVRLASEKCM
Sbjct: 64  IEYSSKE------------------------EAKLAKEKMHGKLACGRPLVVRLASEKCM 123

Query: 122 IDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSHVKKQKQD 181
           IDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSS VKKQKQD
Sbjct: 124 IDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQD 169

Query: 182 NISCRDNIDK 191
           NISCRDNIDK
Sbjct: 184 NISCRDNIDK 169

[Close]

BLAST of MC06g1886 vs. ExPASy TrEMBL
Match: A0A6J1DXL8 (probable RNA-binding protein 18 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 309 bits (791), Expect = 4.39e-105
Identity = 165/191 (86.39%), Postives = 166/191 (86.91%), Query Frame = 0


Query: 1   QDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 60
           +DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 21  KDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 80

Query: 61  FIEYSSKEVSCLVSHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLASEKC 120
           FIEYSSKE                        EAKLAKEKMHGKLACGRPLVVRLASEKC
Sbjct: 81  FIEYSSKE------------------------EAKLAKEKMHGKLACGRPLVVRLASEKC 140

Query: 121 MIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSHVKKQKQ 180
           MIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSS VKKQKQ
Sbjct: 141 MIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQ 187

Query: 181 DNISCRDNIDK 191
           DNISCRDNIDK
Sbjct: 201 DNISCRDNIDK 187

[Close]

BLAST of MC06g1886 vs. ExPASy TrEMBL
Match: A0A6J1DUC5 (probable RNA-binding protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 308 bits (790), Expect = 1.82e-104
Identity = 165/190 (86.84%), Postives = 165/190 (86.84%), Query Frame = 0


Query: 2   DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61
           DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 53  DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 112

Query: 62  IEYSSKEVSCLVSHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLASEKCM 121
           IEYSSKE                        EAKLAKEKMHGKLACGRPLVVRLASEKCM
Sbjct: 113 IEYSSKE------------------------EAKLAKEKMHGKLACGRPLVVRLASEKCM 172

Query: 122 IDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSHVKKQKQD 181
           IDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSS VKKQKQD
Sbjct: 173 IDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQD 218

Query: 182 NISCRDNIDK 191
           NISCRDNIDK
Sbjct: 233 NISCRDNIDK 218

[Close]

BLAST of MC06g1886 vs. ExPASy TrEMBL
Match: A0A1S3ATX2 (probable RNA-binding protein 18 OS=Cucumis melo OX=3656 GN=LOC103482914 PE=4 SV=1)

HSP 1 Score: 260 bits (665), Expect = 3.31e-86
Identity = 142/190 (74.74%), Postives = 152/190 (80.00%), Query Frame = 0


Query: 2   DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61
           DS+GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 2   DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61

Query: 62  IEYSSKEVSCLVSHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLASEKCM 121
           IEYSSKE                        EAKLAKEKMHGKLACGRPLVVRLASEK M
Sbjct: 62  IEYSSKE------------------------EAKLAKEKMHGKLACGRPLVVRLASEKLM 121

Query: 122 IDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSHVKKQKQD 181
           ++T    S+AA ES KSRLGGS+YGQ+TR+DKIAAIKNKLRALEG  ESSS  VKK KQD
Sbjct: 122 VNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSS--VKKPKQD 165

Query: 182 NISCRDNIDK 191
           NIS +D+IDK
Sbjct: 182 NISFKDHIDK 165

[Close]

BLAST of MC06g1886 vs. ExPASy TrEMBL
Match: A0A5A7TLJ6 (Putative RNA-binding protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00930 PE=4 SV=1)

HSP 1 Score: 261 bits (667), Expect = 4.86e-86
Identity = 142/191 (74.35%), Postives = 153/191 (80.10%), Query Frame = 0


Query: 1   QDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 60
           +DS+GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 33  EDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 92

Query: 61  FIEYSSKEVSCLVSHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLASEKC 120
           FIEYSSKE                        EAKLAKEKMHGKLACGRPLVVRLASEK 
Sbjct: 93  FIEYSSKE------------------------EAKLAKEKMHGKLACGRPLVVRLASEKL 152

Query: 121 MIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSHVKKQKQ 180
           M++T    S+AA ES KSRLGGS+YGQ+TR+DKIAAIKNKLRALEG  ESSS  VKK KQ
Sbjct: 153 MVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSS--VKKPKQ 197

Query: 181 DNISCRDNIDK 191
           DNIS +D+IDK
Sbjct: 213 DNISFKDHIDK 197

[Close]

BLAST of MC06g1886 vs. TAIR 10
Match: AT5G52545.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-12
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 101 MHGKLACGRPLVVRLASEKCMIDTTKSIS-RAAGESSKSR-LGGSNYGQMTRTDKIAAIK 160
           MHG+LACGRPLVVRLASEK + D++   S R+  E +++R + GS+ GQM+R +K+ AIK
Sbjct: 1   MHGRLACGRPLVVRLASEKHLEDSSHDHSKRSLPEGNRTRFVNGSSSGQMSRDEKVTAIK 60

Query: 161 NKLRALEGEAESSSSHVKKQK 180
           NKL+ALE   E      KKQK
Sbjct: 61  NKLKALE---EDEKRDPKKQK 78

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BLAST of MC06g1886 vs. TAIR 10
Match: AT5G03580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 52.4 bits (124), Expect = 4.7e-07
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 13 SKLYIGNLDLRITEATLIKMFSPFGKII----SEDFLWHTRGPKRGEPRGFAFIEYSSKE 69
          + LYI NLD +++E  L  MFS FGK+I    ++DF        RGE RGFAFIE+ S +
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDF--------RGESRGFAFIEFESAD 68

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BLAST of MC06g1886 vs. TAIR 10
Match: AT3G16380.1 (poly(A) binding protein 6 )

HSP 1 Score: 47.4 bits (111), Expect = 1.5e-05
Identity = 31/107 (28.97%), Postives = 50/107 (46.73%), Query Frame = 0


Query: 13  SKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCL 72
           S LY+ NL   + E  L ++F  +G+I+S   + H    + G  +GF F+ +S+ E    
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH----ENGRSKGFGFVCFSNCE---- 363

Query: 73  VSHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLASEK 120
                               E+K AK  ++G L  G+P+VVR+A  K
Sbjct: 364 --------------------ESKQAKRYLNGFLVDGKPIVVRVAERK 382

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BLAST of MC06g1886 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 44.7 bits (104), Expect = 9.9e-05
Identity = 32/115 (27.83%), Postives = 46/115 (40.00%), Query Frame = 0


Query: 12  ESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSC 71
           ++KLY+  L  R TE TL   F  FG +I  + +          P+GFAF+ Y ++E   
Sbjct: 76  KTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMV---MDKVANRPKGFAFLRYETEE--- 135

Query: 72  LVSHFIAFVKQFLIFACKSMQEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTK 127
                                EA  A + MHGK   GR + V  A  +  +   K
Sbjct: 136 ---------------------EAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAK 163

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BLAST of MC06g1886 vs. TAIR 10
Match: AT5G47620.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 42.4 bits (98), Expect = 4.9e-04
Identity = 21/55 (38.18%), Postives = 30/55 (54.55%), Query Frame = 0


Query: 14  KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE 69
           K+++G L   +TEA   K F+ FG I     ++  R  +   PRGF FI Y S+E
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQR---PRGFGFISYDSEE 158

The following BLAST results are available for this feature:

BLAST of MC06g1886 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PBM8	6.9e-11	30.19	Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1	[more]
Q9CR83	1.2e-10	32.26	Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1	[more]
Q96H35	1.5e-10	31.58	Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1	[more]
Q5R6W3	1.5e-10	31.58	Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1	[more]
Q66J99	4.5e-10	29.30	Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1	[more]

BLAST of MC06g1886 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157813.1	6.89e-105	86.84	probable RNA-binding protein 18 isoform X3 [Momordica charantia]	[more]
XP_022157809.1	9.06e-105	86.39	probable RNA-binding protein 18 isoform X2 [Momordica charantia]	[more]
XP_022157798.1	3.77e-104	86.84	probable RNA-binding protein 18 isoform X1 [Momordica charantia] >XP_022157801.1...	[more]
XP_031741097.1	6.70e-101	84.29	probable RNA-binding protein 18 isoform X1 [Cucumis sativus]	[more]
XP_008437528.1	6.84e-86	74.74	PREDICTED: probable RNA-binding protein 18 [Cucumis melo]	[more]

BLAST of MC06g1886 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUD9	3.34e-105	86.84	probable RNA-binding protein 18 isoform X3 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DXL8	4.39e-105	86.39	probable RNA-binding protein 18 isoform X2 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DUC5	1.82e-104	86.84	probable RNA-binding protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A1S3ATX2	3.31e-86	74.74	probable RNA-binding protein 18 OS=Cucumis melo OX=3656 GN=LOC103482914 PE=4 SV=...	[more]
A0A5A7TLJ6	4.86e-86	74.35	Putative RNA-binding protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of MC06g1886 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52545.1	2.2e-12	54.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G03580.1	4.7e-07	46.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G16380.1	1.5e-05	28.97	poly(A) binding protein 6	[more]
AT1G73530.1	9.9e-05	27.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G47620.1	4.9e-04	38.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 14..114 e-value: 2.2E-6 score: 37.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 15..68 e-value: 3.8E-8 score: 33.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 13..118 score: 13.447216
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 10..127 e-value: 4.6E-19 score: 70.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..191
None	No IPR available	PANTHER	PTHR21245	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	coord: 8..188
None	No IPR available	PANTHER	PTHR21245:SF2	RNA-BINDING PROTEIN 18-RELATED	coord: 8..188
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 13..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g1886.1	MC06g1886.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding