MC06g1882 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g1882
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	HMA domain-containing protein
Location	MC06: 26207590 .. 26207715 (+)
RNA-Seq Expression	MC06g1882
Synteny	MC06g1882

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGCAGGAGTGAACTCAATCTCCATGAACATGAGAGAGAAGAAAATGACAGTAAGAGGGAATGTGGATCCAGTGGGCCTGGTGAACAAACTAAGGAAGATTTGCAACACAGTGATAGTTTCAGTT

mRNA sequence

GTTGCAGGAGTGAACTCAATCTCCATGAACATGAGAGAGAAGAAAATGACAGTAAGAGGGAATGTGGATCCAGTGGGCCTGGTGAACAAACTAAGGAAGATTTGCAACACAGTGATAGTTTCAGTT

Coding sequence (CDS)

GTTGCAGGAGTGAACTCAATCTCCATGAACATGAGAGAGAAGAAAATGACAGTAAGAGGGAATGTGGATCCAGTGGGCCTGGTGAACAAACTAAGGAAGATTTGCAACACAGTGATAGTTTCAGTT

Protein sequence

VAGVNSISMNMREKKMTVRGNVDPVGLVNKLRKICNTVIVSV

Homology

[Close]

BLAST of MC06g1882 vs. ExPASy Swiss-Prot
Match: O03982 (Heavy metal-associated isoprenylated plant protein 39 OS=Arabidopsis thaliana OX=3702 GN=HIPP39 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 3.1e-04
Identity = 20/31 (64.52%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 3  GVNSISMNMREKKMTVRGNVDPVGLVNKLRK 34
          G++SI+M+M+EKK+TV G VDPV +V+KLRK
Sbjct: 28 GIDSIAMDMKEKKLTVIGTVDPVNVVSKLRK 58

[Close]

BLAST of MC06g1882 vs. NCBI nr
Match: KAG7016852.1 (Heavy metal-associated isoprenylated plant protein 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.1 bits (157), Expect = 5.74e-12
Identity = 32/42 (76.19%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  VAGVNSISMNMREKKMTVRGNVDPVGLVNKLRKICNTVIVSV 42
          +AGVNSISM+M+EKK+TV G+VDPV +V+KLRKIC+TVIVSV
Sbjct: 2  IAGVNSISMDMKEKKLTVTGDVDPVMIVSKLRKICHTVIVSV 43

[Close]

BLAST of MC06g1882 vs. NCBI nr
Match: XP_022973069.1 (heavy metal-associated isoprenylated plant protein 39-like [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 1.97e-11
Identity = 32/42 (76.19%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  VAGVNSISMNMREKKMTVRGNVDPVGLVNKLRKICNTVIVSV 42
          +AGVNSISM+M+EKK+TV G+VDPV +V+KLRKIC+TVIVSV
Sbjct: 26 LAGVNSISMDMKEKKLTVTGDVDPVMIVSKLRKICHTVIVSV 67

[Close]

BLAST of MC06g1882 vs. NCBI nr
Match: KAG6579369.1 (Heavy metal-associated isoprenylated plant protein 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 1.97e-11
Identity = 32/42 (76.19%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  VAGVNSISMNMREKKMTVRGNVDPVGLVNKLRKICNTVIVSV 42
          +AGVNSISM+M+EKK+TV G+VDPV +V+KLRKIC+TVIVSV
Sbjct: 26 LAGVNSISMDMKEKKLTVTGDVDPVMIVSKLRKICHTVIVSV 67

[Close]

BLAST of MC06g1882 vs. NCBI nr
Match: XP_022922258.1 (heavy metal-associated isoprenylated plant protein 39-like [Cucurbita moschata] >XP_023549811.1 heavy metal-associated isoprenylated plant protein 39-like [Cucurbita pepo subsp. pepo] >KAG6579367.1 Heavy metal-associated isoprenylated plant protein 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 1.97e-11
Identity = 32/42 (76.19%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  VAGVNSISMNMREKKMTVRGNVDPVGLVNKLRKICNTVIVSV 42
          +AGVNSISM+M+EKK+TV G+VDPV +V+KLRKIC+TVIVSV
Sbjct: 26 LAGVNSISMDMKEKKLTVTGDVDPVMIVSKLRKICHTVIVSV 67

[Close]

BLAST of MC06g1882 vs. NCBI nr
Match: XP_022156754.1 (heavy metal-associated isoprenylated plant protein 39-like [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 2.19e-11
Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1  VAGVNSISMNMREKKMTVRGNVDPVGLVNKLRKICNTVIVSV 42
          ++GVNSIS++M+EKK+TV G+VDPVGLV KLRK C+TVIVSV
Sbjct: 26 LSGVNSISLDMKEKKLTVTGDVDPVGLVRKLRKTCHTVIVSV 67

[Close]

BLAST of MC06g1882 vs. ExPASy TrEMBL
Match: A0A6J1IDG3 (heavy metal-associated isoprenylated plant protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111471567 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.53e-12
Identity = 32/42 (76.19%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  VAGVNSISMNMREKKMTVRGNVDPVGLVNKLRKICNTVIVSV 42
          +AGVNSISM+M+EKK+TV G+VDPV +V+KLRKIC+TVIVSV
Sbjct: 26 LAGVNSISMDMKEKKLTVTGDVDPVMIVSKLRKICHTVIVSV 67

[Close]

BLAST of MC06g1882 vs. ExPASy TrEMBL
Match: A0A6J1E630 (heavy metal-associated isoprenylated plant protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111430294 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.53e-12
Identity = 32/42 (76.19%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  VAGVNSISMNMREKKMTVRGNVDPVGLVNKLRKICNTVIVSV 42
          +AGVNSISM+M+EKK+TV G+VDPV +V+KLRKIC+TVIVSV
Sbjct: 26 LAGVNSISMDMKEKKLTVTGDVDPVMIVSKLRKICHTVIVSV 67

[Close]

BLAST of MC06g1882 vs. ExPASy TrEMBL
Match: A0A6J1DUI0 (heavy metal-associated isoprenylated plant protein 39-like OS=Momordica charantia OX=3673 GN=LOC111023592 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.06e-11
Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1  VAGVNSISMNMREKKMTVRGNVDPVGLVNKLRKICNTVIVSV 42
          ++GVNSIS++M+EKK+TV G+VDPVGLV KLRK C+TVIVSV
Sbjct: 26 LSGVNSISLDMKEKKLTVTGDVDPVGLVRKLRKTCHTVIVSV 67

[Close]

BLAST of MC06g1882 vs. ExPASy TrEMBL
Match: A0A5D3C3P0 (FK506-binding protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00920 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.07e-10
Identity = 30/42 (71.43%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1  VAGVNSISMNMREKKMTVRGNVDPVGLVNKLRKICNTVIVSV 42
          ++GVNSISM+M+EKK+TV G+VDPV +V+KLRKIC+T IVSV
Sbjct: 26 LSGVNSISMDMKEKKLTVTGDVDPVVIVSKLRKICHTTIVSV 67

[Close]

BLAST of MC06g1882 vs. ExPASy TrEMBL
Match: E5GBD2 (Metal ion binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.07e-10
Identity = 30/42 (71.43%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1  VAGVNSISMNMREKKMTVRGNVDPVGLVNKLRKICNTVIVSV 42
          ++GVNSISM+M+EKK+TV G+VDPV +V+KLRKIC+T IVSV
Sbjct: 26 LSGVNSISMDMKEKKLTVTGDVDPVVIVSKLRKICHTTIVSV 67

[Close]

BLAST of MC06g1882 vs. TAIR 10
Match: AT1G01490.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 2.2e-05
Identity = 20/31 (64.52%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 3  GVNSISMNMREKKMTVRGNVDPVGLVNKLRK 34
          G++SI+M+M+EKK+TV G VDPV +V+KLRK
Sbjct: 28 GIDSIAMDMKEKKLTVIGTVDPVNVVSKLRK 58

[Close]

BLAST of MC06g1882 vs. TAIR 10
Match: AT1G01490.2 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 2.2e-05
Identity = 20/31 (64.52%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 3  GVNSISMNMREKKMTVRGNVDPVGLVNKLRK 34
          G++SI+M+M+EKK+TV G VDPV +V+KLRK
Sbjct: 28 GIDSIAMDMKEKKLTVIGTVDPVNVVSKLRK 58

[Close]

BLAST of MC06g1882 vs. TAIR 10
Match: AT5G52750.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 1.4e-04
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 3  GVNSISMNMREKKMTVRGNVDPVGLVNKLRKICNTVIVSV 43
          GV SI+M+ +  KMTV G VD   +V KLRK+CNT +VSV
Sbjct: 30 GVTSITMDDKTGKMTVVGEVDVPVIVMKLRKLCNTELVSV 69

[Close]

BLAST of MC06g1882 vs. TAIR 10
Match: AT5G52760.1 (Copper transport protein family )

HSP 1 Score: 40.8 bits (94), Expect = 3.1e-04
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 2  AGVNSISMNMREKKMTVRGNVDPVGLVNKLRKICNTVIVSV 43
          +GV SI+M+ +  KMT+ G VD   +V KLRK+CNT IVSV
Sbjct: 29 SGVTSITMD-KSGKMTIVGEVDVPAVVMKLRKLCNTEIVSV 68

The following BLAST results are available for this feature:

BLAST of MC06g1882 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O03982	3.1e-04	64.52	Heavy metal-associated isoprenylated plant protein 39 OS=Arabidopsis thaliana OX...	[more]

BLAST of MC06g1882 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016852.1	5.74e-12	76.19	Heavy metal-associated isoprenylated plant protein 12, partial [Cucurbita argyro...	[more]
XP_022973069.1	1.97e-11	76.19	heavy metal-associated isoprenylated plant protein 39-like [Cucurbita maxima]	[more]
KAG6579369.1	1.97e-11	76.19	Heavy metal-associated isoprenylated plant protein 12, partial [Cucurbita argyro...	[more]
XP_022922258.1	1.97e-11	76.19	heavy metal-associated isoprenylated plant protein 39-like [Cucurbita moschata] ...	[more]
XP_022156754.1	2.19e-11	73.81	heavy metal-associated isoprenylated plant protein 39-like [Momordica charantia]	[more]

BLAST of MC06g1882 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IDG3	9.53e-12	76.19	heavy metal-associated isoprenylated plant protein 39-like OS=Cucurbita maxima O...	[more]
A0A6J1E630	9.53e-12	76.19	heavy metal-associated isoprenylated plant protein 39-like OS=Cucurbita moschata...	[more]
A0A6J1DUI0	1.06e-11	73.81	heavy metal-associated isoprenylated plant protein 39-like OS=Momordica charanti...	[more]
A0A5D3C3P0	1.07e-10	71.43	FK506-binding protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
E5GBD2	1.07e-10	71.43	Metal ion binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of MC06g1882 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01490.1	2.2e-05	64.52	Heavy metal transport/detoxification superfamily protein	[more]
AT1G01490.2	2.2e-05	64.52	Heavy metal transport/detoxification superfamily protein	[more]
AT5G52750.1	1.4e-04	57.50	Heavy metal transport/detoxification superfamily protein	[more]
AT5G52760.1	3.1e-04	56.10	Copper transport protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.100		coord: 1..42 e-value: 1.9E-10 score: 42.8
None	No IPR available	PANTHER	PTHR45811:SF63	HEAVY METAL-ASSOCIATED DOMAIN, HMA-RELATED	coord: 2..42
None	No IPR available	PANTHER	PTHR45811	COPPER TRANSPORT PROTEIN FAMILY-RELATED	coord: 2..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g1882.1	MC06g1882.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding