MC06g1831 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g1831
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Mitochondrial import inner membrane translocase subunit
Location	MC06: 25616032 .. 25616187 (-)
RNA-Seq Expression	MC06g1831
Synteny	MC06g1831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGTGCAGACCTTAAGAGTGAAGTGCTTTGATAAGTGTATCACAAAGCCAGGGTCGAGCCTAAGTGGGAGCGAGAGCAGTTGCATCTCCAGGTGCATGGAGCGCTACATTGAGGCCACCAGCATCGTCAGTAAAGCCTTGTTTAAGACACCGCAC

mRNA sequence

TTCGTGCAGACCTTAAGAGTGAAGTGCTTTGATAAGTGTATCACAAAGCCAGGGTCGAGCCTAAGTGGGAGCGAGAGCAGTTGCATCTCCAGGTGCATGGAGCGCTACATTGAGGCCACCAGCATCGTCAGTAAAGCCTTGTTTAAGACACCGCAC

Coding sequence (CDS)

TTCGTGCAGACCTTAAGAGTGAAGTGCTTTGATAAGTGTATCACAAAGCCAGGGTCGAGCCTAAGTGGGAGCGAGAGCAGTTGCATCTCCAGGTGCATGGAGCGCTACATTGAGGCCACCAGCATCGTCAGTAAAGCCTTGTTTAAGACACCGCAC

Protein sequence

FVQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALFKTPH

Homology

[Close]

BLAST of MC06g1831 vs. ExPASy Swiss-Prot
Match: Q9XH48 (Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis thaliana OX=3702 GN=TIM13 PE=1 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-16
Identity = 36/47 (76.60%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 2  VQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALF 49
          ++TLR KCFDKC+TKPGSSL GSESSCISRC+ERY+EAT+I+S++LF
Sbjct: 38 IETLRTKCFDKCVTKPGSSLGGSESSCISRCVERYMEATAIISRSLF 84

[Close]

BLAST of MC06g1831 vs. ExPASy Swiss-Prot
Match: Q9XGY5 (Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa subsp. japonica OX=39947 GN=TIM13 PE=3 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 3.7e-15
Identity = 37/50 (74.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1  FVQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALFKT 51
          F++T+  KCF KC+TKPGSSLSGSESSCISRC++RYIEAT IVS+ALF +
Sbjct: 33 FLETVGNKCFAKCVTKPGSSLSGSESSCISRCVDRYIEATGIVSRALFSS 82

[Close]

BLAST of MC06g1831 vs. ExPASy Swiss-Prot
Match: Q4PGT2 (Mitochondrial import inner membrane translocase subunit TIM13 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=TIM13 PE=3 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 5.6e-08
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 8  KCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVS 45
          KC+ KCI  PG+SLSG E +C++RCMERY EA +IVS
Sbjct: 48 KCYSKCIPAPGASLSGKEQTCLTRCMERYFEAFNIVS 84

[Close]

BLAST of MC06g1831 vs. ExPASy Swiss-Prot
Match: Q8AVK1 (Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevis OX=8355 GN=timm13-b PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 9.6e-08
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 2  VQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKA 47
          +Q +  KCF KCI KPG SL  SE  C++ CM+RY++A +IVS+A
Sbjct: 40 LQRMTDKCFRKCIGKPGGSLDNSEQKCVAMCMDRYMDAWNIVSRA 84

[Close]

BLAST of MC06g1831 vs. ExPASy Swiss-Prot
Match: Q10481 (Mitochondrial import inner membrane translocase subunit tim13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tim13 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 9.6e-08
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 2  VQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSK 46
          +  +   CFDKCI +PGS+   +E SC+S+CMERY++A +IVS+
Sbjct: 38 ISKINENCFDKCIPEPGSTFDPNEKSCVSKCMERYMDAWNIVSR 81

[Close]

BLAST of MC06g1831 vs. NCBI nr
Match: XP_022159838.1 (mitochondrial import inner membrane translocase subunit Tim13 [Momordica charantia])

HSP 1 Score: 104 bits (260), Expect = 8.82e-28
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  FVQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALFKTPH 52
          F++TLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALFKTPH
Sbjct: 36 FLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALFKTPH 87

[Close]

BLAST of MC06g1831 vs. NCBI nr
Match: XP_038906948.1 (mitochondrial import inner membrane translocase subunit TIM13 [Benincasa hispida])

HSP 1 Score: 103 bits (257), Expect = 2.53e-27
Identity = 49/52 (94.23%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  FVQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALFKTPH 52
          F++TLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVS+ALFKTPH
Sbjct: 36 FLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of MC06g1831 vs. NCBI nr
Match: XP_004145880.1 (mitochondrial import inner membrane translocase subunit Tim13 [Cucumis sativus] >XP_008437464.1 PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Cucumis melo] >KGN49963.1 hypothetical protein Csa_000141 [Cucumis sativus])

HSP 1 Score: 103 bits (257), Expect = 2.53e-27
Identity = 49/52 (94.23%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  FVQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALFKTPH 52
          F++TLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVS+ALFKTPH
Sbjct: 36 FLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of MC06g1831 vs. NCBI nr
Match: XP_022995653.1 (mitochondrial import inner membrane translocase subunit Tim13-like [Cucurbita maxima])

HSP 1 Score: 102 bits (255), Expect = 4.96e-27
Identity = 48/52 (92.31%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  FVQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALFKTPH 52
          F++TLRVKCFDKCITKPGS+LSGSESSCISRCMERYIEATS+VSKALFKTPH
Sbjct: 35 FLETLRVKCFDKCITKPGSNLSGSESSCISRCMERYIEATSLVSKALFKTPH 86

[Close]

BLAST of MC06g1831 vs. NCBI nr
Match: XP_022958202.1 (mitochondrial import inner membrane translocase subunit Tim13-like [Cucurbita moschata] >XP_023534506.1 mitochondrial import inner membrane translocase subunit Tim13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102 bits (253), Expect = 1.00e-26
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1  FVQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALFKTPH 52
          F++TLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVS ALFKTPH
Sbjct: 35 FLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH 86

[Close]

BLAST of MC06g1831 vs. ExPASy TrEMBL
Match: A0A6J1DZZ6 (Mitochondrial import inner membrane translocase subunit OS=Momordica charantia OX=3673 GN=LOC111026139 PE=3 SV=1)

HSP 1 Score: 104 bits (260), Expect = 4.27e-28
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  FVQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALFKTPH 52
          F++TLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALFKTPH
Sbjct: 36 FLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALFKTPH 87

[Close]

BLAST of MC06g1831 vs. ExPASy TrEMBL
Match: A0A0A0KK66 (Mitochondrial import inner membrane translocase subunit OS=Cucumis sativus OX=3659 GN=Csa_5G146860 PE=3 SV=1)

HSP 1 Score: 103 bits (257), Expect = 1.22e-27
Identity = 49/52 (94.23%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  FVQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALFKTPH 52
          F++TLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVS+ALFKTPH
Sbjct: 36 FLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of MC06g1831 vs. ExPASy TrEMBL
Match: A0A1S3AUN2 (Mitochondrial import inner membrane translocase subunit OS=Cucumis melo OX=3656 GN=LOC103482878 PE=3 SV=1)

HSP 1 Score: 103 bits (257), Expect = 1.22e-27
Identity = 49/52 (94.23%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  FVQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALFKTPH 52
          F++TLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVS+ALFKTPH
Sbjct: 36 FLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of MC06g1831 vs. ExPASy TrEMBL
Match: A0A6J1K8L7 (Mitochondrial import inner membrane translocase subunit OS=Cucurbita maxima OX=3661 GN=LOC111491121 PE=3 SV=1)

HSP 1 Score: 102 bits (255), Expect = 2.40e-27
Identity = 48/52 (92.31%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  FVQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALFKTPH 52
          F++TLRVKCFDKCITKPGS+LSGSESSCISRCMERYIEATS+VSKALFKTPH
Sbjct: 35 FLETLRVKCFDKCITKPGSNLSGSESSCISRCMERYIEATSLVSKALFKTPH 86

[Close]

BLAST of MC06g1831 vs. ExPASy TrEMBL
Match: A0A6J1H177 (Mitochondrial import inner membrane translocase subunit OS=Cucurbita moschata OX=3662 GN=LOC111459498 PE=3 SV=1)

HSP 1 Score: 102 bits (253), Expect = 4.85e-27
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1  FVQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALFKTPH 52
          F++TLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVS ALFKTPH
Sbjct: 35 FLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSGALFKTPH 86

[Close]

BLAST of MC06g1831 vs. TAIR 10
Match: AT1G61570.1 (translocase of the inner mitochondrial membrane 13 )

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-17
Identity = 36/47 (76.60%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 2  VQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSKALF 49
          ++TLR KCFDKC+TKPGSSL GSESSCISRC+ERY+EAT+I+S++LF
Sbjct: 38 IETLRTKCFDKCVTKPGSSLGGSESSCISRCVERYMEATAIISRSLF 84

[Close]

BLAST of MC06g1831 vs. TAIR 10
Match: AT5G50810.1 (translocase inner membrane subunit 8 )

HSP 1 Score: 47.0 bits (110), Expect = 5.4e-06
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 9  CFDKCITK-PGSSLSGSESSCISRCMERYIEATSIVSK 46
          C+DKCIT  PGS  S SESSC++ C +RY++ + I+ K
Sbjct: 35 CWDKCITSAPGSKFSSSESSCLTHCAQRYMDMSMIIMK 72

The following BLAST results are available for this feature:

BLAST of MC06g1831 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XH48	3.3e-16	76.60	Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis tha...	[more]
Q9XGY5	3.7e-15	74.00	Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa su...	[more]
Q4PGT2	5.6e-08	64.86	Mitochondrial import inner membrane translocase subunit TIM13 OS=Ustilago maydis...	[more]
Q8AVK1	9.6e-08	53.33	Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevi...	[more]
Q10481	9.6e-08	50.00	Mitochondrial import inner membrane translocase subunit tim13 OS=Schizosaccharom...	[more]

BLAST of MC06g1831 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159838.1	8.82e-28	96.15	mitochondrial import inner membrane translocase subunit Tim13 [Momordica charant...	[more]
XP_038906948.1	2.53e-27	94.23	mitochondrial import inner membrane translocase subunit TIM13 [Benincasa hispida...	[more]
XP_004145880.1	2.53e-27	94.23	mitochondrial import inner membrane translocase subunit Tim13 [Cucumis sativus] ...	[more]
XP_022995653.1	4.96e-27	92.31	mitochondrial import inner membrane translocase subunit Tim13-like [Cucurbita ma...	[more]
XP_022958202.1	1.00e-26	94.23	mitochondrial import inner membrane translocase subunit Tim13-like [Cucurbita mo...	[more]

BLAST of MC06g1831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZZ6	4.27e-28	96.15	Mitochondrial import inner membrane translocase subunit OS=Momordica charantia O...	[more]
A0A0A0KK66	1.22e-27	94.23	Mitochondrial import inner membrane translocase subunit OS=Cucumis sativus OX=36...	[more]
A0A1S3AUN2	1.22e-27	94.23	Mitochondrial import inner membrane translocase subunit OS=Cucumis melo OX=3656 ...	[more]
A0A6J1K8L7	2.40e-27	92.31	Mitochondrial import inner membrane translocase subunit OS=Cucurbita maxima OX=3...	[more]
A0A6J1H177	4.85e-27	94.23	Mitochondrial import inner membrane translocase subunit OS=Cucurbita moschata OX...	[more]

BLAST of MC06g1831 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61570.1	2.3e-17	76.60	translocase of the inner mitochondrial membrane 13	[more]
AT5G50810.1	5.4e-06	52.63	translocase inner membrane subunit 8	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035427	Tim10-like domain superfamily	GENE3D	1.10.287.810	Mitochondrial import inner membrane translocase subunit tim13 like domains	coord: 1..51 e-value: 4.2E-19 score: 69.8
IPR035427	Tim10-like domain superfamily	SUPERFAMILY	144122	Tim10-like	coord: 3..49
IPR004217	Tim10-like	PFAM	PF02953	zf-Tim10_DDP	coord: 2..47 e-value: 4.7E-18 score: 64.6
None	No IPR available	PANTHER	PTHR19338:SF14	OSJNBA0064M23.16 PROTEIN	coord: 1..52
IPR039238	Mitochondrial import inner membrane translocase subunit Tim8/13	PANTHER	PTHR19338	TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG	coord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g1831.1	MC06g1831.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045039	protein insertion into mitochondrial inner membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0042719	mitochondrial intermembrane space protein transporter complex
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:0046872	metal ion binding