MC06g1772 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g1772
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Location	MC06: 24978977 .. 24984019 (-)
RNA-Seq Expression	MC06g1772
Synteny	MC06g1772

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATCTGTAAATGAACAAAATCCAAATTCAGTTAACACAATGAATACCAATAAATACTGTTCCTAACTATTCAACAGAAACCACCGCTGACACAGAACCGTCGTCAAATTCTGAAAACAAGGAATTGAAGACCTGTAGTCTCATCGTGGAAGAAGTTTAATTTGAAATCGTGGTAACACAATGACTACAGATAAAAGTATCGAGAGAGATTAATCAAATCGAGATATAACAAAACAAGACACAAGTCGGCAATGGATGAATCAAATCAAATCGATCAACTAAAAGCTTAAACACCTAATCTAATTAGATCGACGAATGAAAAGCATTTTAGCCTAATCGATACTGAGCAATCGCGATTATTAACTTAAGAACTATTTGATTTCCTCGTCGACTAATCAAAACCGTACGGCGTACAGTAATTAGGAAATATGAAATTTAGCAATCGCGATCGTTGTTCAAGAAGCTACTTGATTTCCTTGTCGACTAATAAAATCGTACAGTAATTAGGAAATGTAAGACCTAGCAATCAATCGCAATACCTCATTCAGAAACTATTTGATTTCCTCGTCGACTAATCTAAACCGTACAGTAATAAGGAATATGAAACCTAGCAATCGCGATGGTTGTTTAAGAAAATATTCGATTTCCTCGTCGACTAATCAAAATCGTACAGTAATTAAGAATCATAGACCAAGCAATCAAGATTACTGATTAAAGAATAAAGGAATTACGAGGCCTGGCAATCACGATTACTGATCAAACTAGAAATTGTTTGGTTTTCTGAAAAGTAAATCACCAATAACCAATCACCAGCTCATACAATGAATCGATAAAAGATCATTCATAATCCATCATACCTGTCTTCTTCCGATTCCGCGATTCTTGATTTCGAACCATAATCTCATCGCACTTCTGGTCAGAGCAATCTCAAAAACCAAAAACTATCGGAAGCATATTTTGTAGCGTTCAACTCGTTTCCAAGTTCCCGCTCTTGCATTTATATAGAGTACTAGCGGAAGCGGTTGCAGGAGAAAATGGTAAAAAGGGGTTTTCCGTTTTGTATGGACGACACAACGACGCTGTAGACTATGGTTATTAAGACCTAGCCCAATATTGTAAGAGGTTTTATGGGCCTTAAGCCCAATATTGTAAGAGGCATTATGGGCCTCGAGCCCAGTACTCCTCTTTTTCATTTCTTCCTTGCGCCCACAGGCCCTTCAAGCTTCGCCGTCTGAGAGTTCTATGGTGCGGCAAATTCTGGGTATCGTGGCGCCATCGAGACCATCCCCGAAATTTGCTTCCATTGGCAAACTGAGAAACTACCTTAAATGTCAAGTGTAGTTTCTGGAGTGGACAATCATGGTAGTTTCCATGGCGAACATTTCCTCCTTCAACAATACTGGTCCACCTCCACATTCTCCTCGCACTCGCAGCCACAACGCTCACAATTTCAAATTCTATCGCCTTATCTGCTGCCGCGTCCATTGGAAGACGGTCTTCTTCTCTTCTGGCCCTAGTCTGGCTGAATCGCTTCGTCCTCTGCAGCCCATGAGACGGAATTTAGCCAACTTCACTTGCTCCGCTGCTGAAAAACCGGAAATCAGGTTGTTCTCTCTATAGTGTTTGATGGAATATCAATGGCTGATGATTTTAGTTTAGTTTTTCCTTTACGACGAATATTCCATTGAAATTACTTCGTTTGGAATTCGGGACTAGTTAACCTTTTCATTGCTCGTTTCGATGAAGAATATGCTATGAATTCTATGTTACACTGGAAATTTAGCTCATTTGCGAGGAAAGAACTCTAATGCATTGCAACTAATTGTGTCTGCATTTGATTTTACTAGTTTTATGTTCCTTTTCTTTGTAAATTCGAGTGGCTGCATTCGCGGACGACCTACCAACAAAAATTTGAGGAAACTACGAGCTTTCATCATCAAGACTGGCTTCTTGTTTGAGCGTTTCCCTCTGTTACACTAACTGTTTTGTTCTTGGTTTCTGTTTTAAAAAATTAATTTGATAAACACTACTTCCACTCCCACCCATATGTTTCTTTGATTTAAAAACATTTTCAAAATCTAAGCTGCATTTTGAAATTCATATTTTTATTTTTAAAATTTGACTAAGAAATTAGATGTATTTTTAAGAAATGCAACAAGACAACTAAAAGTGAAATAATTATCAGGGCGGTGTTAGTTGGTTGTCATTTTGATCATTAATGCTTTTAATTTACAAACGAAAGACCAAGAGGAAGCTGGTGTAGTCTGATTGGTTTTCTTCTATCTTAATGTTTTTTTTTTCAGTCTACCTGTTATTCAACCTGAAATGAGGCTTTGTGTGACCATATCTGTTTTTTTCTTAGTTCCACGGCCAAGATAAGAAGTGAAGTTCTCTCTCCTTTTCGATCCGTTCGGATGTTCTTTTATCTCACTTTCATTGCCAGTGGTACATTGGGAGGACTGATTGCAACCACTCAATTGCTAGCTGCATTGGCAAATTCATCAAGAGCTGAACAAGTCCCTGATATTCTAAAAGGACTTGGAATAGACTTCGGAGCCGTAGCTCTTTTTGCATTTCTTTACTTCAGAGAGAACAATGCGAAAAATGCTCAGTTGGCAAGACTTTCAAGAGAAGAAAGTCTTTCGAATCTGAAGCTTCGAGTGGACCAAAGCAAAGTTATTCCTCTCAACTCTCTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAGATCAAGTGAACCTTTCACTGAACAACTTCTAGAACGGGGCGTGGTAGTCGTACCCTTTGCCACAGATGTCAGTTCCCTGAATTTTGAGTTTGATGAACGTGAAGATTTGAAGGATGTAACCACCAAAAGAAAAAGACTCTGGCGGTTGACTCCAGTTTACATGCCCGAGTGGTCGGCGTAAGTAATTATAATTTACCATCCATTTTCACATTGTTTCCCTCCTCCCCCTTCTCATTTTCCTTTTCCTGTGAACTTTAGGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTATCCACCGAGTCTCCTGTGTAAGTCGTTCTCCTTGTTAATCTTCAAATAAATTTAAAGTAAAAGGGTGACCTCTACCATATTCTATGGAGCTGCCAATTCGCACAGTCTATCTGGACCGGTTTCTTTTTGGGGTGTCCTTGGCTTGTAACAGGAATTGTATGGGTTTCCGGGATAGAGGAACCCTGTTTTGATAGGCTTGTTTTTCTTGTTATTATGTGAGGTATTTAGATCGAGGGGAATAGTATAATTTTTAGGGGTGGGGATTGGGATCTAGTTAGATTTAATGCCTCTTTTTGCGTTGATTTCTAAGGCTTTTTGTAATTACCAATTAGGTGTCATTCTCTTGAACAGGGGTCATTCTTGTAGGTGGATCCCTTTTGGTGGGCTTGTTTTTTTGTATGCTCCTGGTATATTCTTTCAAATGAAAACTCGGTTTCTTATCATAATAAATAAATAAAATGGTTTCCCTTTTTATACTTAAACTAAAAATCAAATTGTGTTAATAAATTCTTTCTTTAGTTTTTTAATGTAATATATTGTTTCATCAAGAAGAGAACAGAAAATAAACTGGTATTGCAGAATCCATGCCAAAACTAGTGCACCTTATGTTACTATTTGTTCTTTCAGGTATTTATCACTGCGAATGGACGGCCGTGTTCGTGGTAGCGGTGTTGGTTATCCTCCTTGGAATGCTCTTGTTGCACAACTACCACCTGTGAAAGGGCTATGGTCAGGTCTTCTAGATGGAATGGATGGAAGAGTTCTTTGAAGAAAAACACTTGCTCTTCTTCCAAGTTAGTATTCATTTAACATAACCTGTTGCCGTTGCACACTTCTATTGTTCTTTTGAATACATTAGACATGCTTCTTGTGATCGTATATCTGGCATCTAAACAGCACAGATATTTAAATGTGGGTATTTTGTTCGTGTTTGACACTTGGATACTTCTCACTTATTAGGGCACGTATCACTCACTTGTTAGTCCAACAAACGTTTGTCACACATCAGTGGTACAAAGTAAATATAGTTTTGACAGTTGTTACACACATTTGAACGCAATATAAATGGTAAACCAGGATAAAATGATAAATTTTGAGAGCAAAATACACCAAACTCATTTTTTTAAATATATAAATGCATAAGCTTATTGACTTTAAATTTTCTACATGATATATATTAAAAAATATGTATATTTGAATAAATGTGTCATTGTCGTGCCCATATCCTATATTTAAAAGAAAAAATGACGTATCAATATATCTATGTCGTATCGCATCCGTATTTCATATCCGTATCCGTGCGTCTTAGTCTGCTCATTGATTGAGACTGAATTTAAAATCTACTCTATGATTGAGACTGAGCTGGCACCAAACTTTCCATATCTGACTCAAATCTTATCTAGTTTCAAGAAACGAGGGAATCAACTTTCCTTGAGAAATAAGGTAGAAAACGATGTCACTTTCTTTTTTTTGTACAAAACCTTTATGTCAAACTAGACGGCAGAATCATATCGTATAATCCAACTGTTTGCTAAAGTTTCTTGCTCCAAACAGAAATATTGTATTGATTTGTTATTGTTTTCAGCCTTCTGCTTCCTCAAATACCTATACTGGAGCTTCCCAGAGCCTTTACCATGGAGTGGAGCAAAGTTTTGCTATCATCTTTCTGTCATATCCAGCACAGAGTCACTGTAAAAGCTCCAACTCCATTGTCAATGGTGGACTGCCTGAGAAATGGAACTGAATCTCGTGACAGCAGAATACAGGTTTTTTTGTAAAGAGATAAAAAGAAGAGGTTTAGCTTATGTGACATCTGGAATTTTATATTTGATCTAGAATCCAATATCCTTATTTATTAGTTATTATAGCTGCAGTAATTGTATTGTAAATCTATATATTGTTAATTGTTAGATGAATGTATATTCAAGTGCCTCAATAAATGGAAATCAAGTAATTATACATTTTCATTCAAATAATACTTTCTAGGCTGCTG

mRNA sequence

CAATCTGTAAATGAACAAAATCCAAATTCAGTTAACACAATGAATACCAATAAATACTGTTCCTAACTATTCAACAGAAACCACCGCTGACACAGAACCGTCGTCAAATTCTGAAAACAAGGAATTGAAGACCTGTAGTCTCATCGTGGAAGAAGTTTAATTTGAAATCGTGGTAACACAATGACTACAGATAAAAGTATCGAGAGAGATTAATCAAATCGAGATATAACAAAACAAGACACAAGTCGGCAATGGATGAATCAAATCAAATCGATCAACTAAAAGCTTAAACACCTAATCTAATTAGATCGACGAATGAAAAGCATTTTAGCCTAATCGATACTGAGCAATCGCGATTATTAACTTAAGAACTATTTGATTTCCTCGTCGACTAATCAAAACCGTACGGCGTACAGTAATTAGGAAATATGAAATTTAGCAATCGCGATCGTTGTTCAAGAAGCTACTTGATTTCCTTGTCGACTAATAAAATCGTACAGTAATTAGGAAATGTAAGACCTAGCAATCAATCGCAATACCTCATTCAGAAACTATTTGATTTCCTCGTCGACTAATCTAAACCGTACAGTAATAAGGAATATGAAACCTAGCAATCGCGATGGTTGTTTAAGAAAATATTCGATTTCCTCGTCGACTAATCAAAATCGTACAGTAATTAAGAATCATAGACCAAGCAATCAAGATTACTGATTAAAGAATAAAGGAATTACGAGGCCTGGCAATCACGATTACTGATCAAACTAGAAATTGTTTGGTTTTCTGAAAAGTAAATCACCAATAACCAATCACCAGCTCATACAATGAATCGATAAAAGATCATTCATAATCCATCATACCTGTCTTCTTCCGATTCCGCGATTCTTGATTTCGAACCATAATCTCATCGCACTTCTGGTCAGAGCAATCTCAAAAACCAAAAACTATCGGAAGCATATTTTGTAGCGTTCAACTCGTTTCCAAGTTCCCGCTCTTGCATTTATATAGAGTACTAGCGGAAGCGGTTGCAGGAGAAAATGGTAAAAAGGGGTTTTCCGTTTTGTATGGACGACACAACGACGCTGTAGACTATGGTTATTAAGACCTAGCCCAATATTGTAAGAGGTTTTATGGGCCTTAAGCCCAATATTGTAAGAGGCATTATGGGCCTCGAGCCCAGTACTCCTCTTTTTCATTTCTTCCTTGCGCCCACAGGCCCTTCAAGCTTCGCCGTCTGAGAGTTCTATGGTGCGGCAAATTCTGGGTATCGTGGCGCCATCGAGACCATCCCCGAAATTTGCTTCCATTGGCAAACTGAGAAACTACCTTAAATGTCAAGTGTAGTTTCTGGAGTGGACAATCATGGTAGTTTCCATGGCGAACATTTCCTCCTTCAACAATACTGGTCCACCTCCACATTCTCCTCGCACTCGCAGCCACAACGCTCACAATTTCAAATTCTATCGCCTTATCTGCTGCCGCGTCCATTGGAAGACGGTCTTCTTCTCTTCTGGCCCTAGTCTGGCTGAATCGCTTCGTCCTCTGCAGCCCATGAGACGGAATTTAGCCAACTTCACTTGCTCCGCTGCTGAAAAACCGGAAATCAGTTCCACGGCCAAGATAAGAAGTGAAGTTCTCTCTCCTTTTCGATCCGTTCGGATGTTCTTTTATCTCACTTTCATTGCCAGTGGTACATTGGGAGGACTGATTGCAACCACTCAATTGCTAGCTGCATTGGCAAATTCATCAAGAGCTGAACAAGTCCCTGATATTCTAAAAGGACTTGGAATAGACTTCGGAGCCGTAGCTCTTTTTGCATTTCTTTACTTCAGAGAGAACAATGCGAAAAATGCTCAGTTGGCAAGACTTTCAAGAGAAGAAAGTCTTTCGAATCTGAAGCTTCGAGTGGACCAAAGCAAAGTTATTCCTCTCAACTCTCTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAGATCAAGTGAACCTTTCACTGAACAACTTCTAGAACGGGGCGTGGTAGTCGTACCCTTTGCCACAGATGTCAGTTCCCTGAATTTTGAGTTTGATGAACGTGAAGATTTGAAGGATGTAACCACCAAAAGAAAAAGACTCTGGCGGTTGACTCCAGTTTACATGCCCGAGTGGTCGGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTATCCACCGAGTCTCCTGTGTATTTATCACTGCGAATGGACGGCCGTGTTCGTGGTAGCGGTGTTGGTTATCCTCCTTGGAATGCTCTTGTTGCACAACTACCACCTGTGAAAGGGCTATGGTCAGGTCTTCTAGATGGAATGGATGGAAGAGTTCTTTGAAGAAAAACACTTGCTCTTCTTCCAACCTTCTGCTTCCTCAAATACCTATACTGGAGCTTCCCAGAGCCTTTACCATGGAGTGGAGCAAAGTTTTGCTATCATCTTTCTGTCATATCCAGCACAGAGTCACTGTAAAAGCTCCAACTCCATTGTCAATGGTGGACTGCCTGAGAAATGGAACTGAATCTCGTGACAGCAGAATACAGGTTTTTTTGTAAAGAGATAAAAAGAAGAGGTTTAGCTTATGTGACATCTGGAATTTTATATTTGATCTAGAATCCAATATCCTTATTTATTAGTTATTATAGCTGCAGTAATTGTATTGTAAATCTATATATTGTTAATTGTTAGATGAATGTATATTCAAGTGCCTCAATAAATGGAAATCAAGTAATTATACATTTTCATTCAAATAATACTTTCTAGGCTGCTG

Coding sequence (CDS)

ATGGTAGTTTCCATGGCGAACATTTCCTCCTTCAACAATACTGGTCCACCTCCACATTCTCCTCGCACTCGCAGCCACAACGCTCACAATTTCAAATTCTATCGCCTTATCTGCTGCCGCGTCCATTGGAAGACGGTCTTCTTCTCTTCTGGCCCTAGTCTGGCTGAATCGCTTCGTCCTCTGCAGCCCATGAGACGGAATTTAGCCAACTTCACTTGCTCCGCTGCTGAAAAACCGGAAATCAGTTCCACGGCCAAGATAAGAAGTGAAGTTCTCTCTCCTTTTCGATCCGTTCGGATGTTCTTTTATCTCACTTTCATTGCCAGTGGTACATTGGGAGGACTGATTGCAACCACTCAATTGCTAGCTGCATTGGCAAATTCATCAAGAGCTGAACAAGTCCCTGATATTCTAAAAGGACTTGGAATAGACTTCGGAGCCGTAGCTCTTTTTGCATTTCTTTACTTCAGAGAGAACAATGCGAAAAATGCTCAGTTGGCAAGACTTTCAAGAGAAGAAAGTCTTTCGAATCTGAAGCTTCGAGTGGACCAAAGCAAAGTTATTCCTCTCAACTCTCTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAGATCAAGTGAACCTTTCACTGAACAACTTCTAGAACGGGGCGTGGTAGTCGTACCCTTTGCCACAGATGTCAGTTCCCTGAATTTTGAGTTTGATGAACGTGAAGATTTGAAGGATGTAACCACCAAAAGAAAAAGACTCTGGCGGTTGACTCCAGTTTACATGCCCGAGTGGTCGGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTATCCACCGAGTCTCCTGTGTATTTATCACTGCGAATGGACGGCCGTGTTCGTGGTAGCGGTGTTGGTTATCCTCCTTGGAATGCTCTTGTTGCACAACTACCACCTGTGAAAGGGCTATGGTCAGGTCTTCTAGATGGAATGGATGGAAGAGTTCTTTGA

Protein sequence

MVVSMANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLRPLQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQSKVIPLNSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVSSLNFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

Homology

[Close]

BLAST of MC06g1772 vs. ExPASy Swiss-Prot
Match: Q9SRY4 (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA1 PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.8e-30
Identity = 82/265 (30.94%), Postives = 130/265 (49.06%), Query Frame = 0


Query: 86  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEQVPDILKGLGIDF 145
           K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ 
Sbjct: 187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query: 146 GAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQSKVIPLNSLRGIARLVICAGP 205
           G + +   L+  EN  +  Q+ +++R+E+LS L LR+  ++V+ L  LR   R VI AG 
Sbjct: 247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query: 206 ESFIMEAFRSSEPFTEQLLERGVVVVPF---------------------ATDVSSLNFEF 265
           +  +  A + ++ F  +LL RGV++VP                      AT + S+  +F
Sbjct: 307 KETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDF 366

Query: 266 DEREDLKDVTTKRKR--LWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRVRG 325
           D R       +K K    ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR 
Sbjct: 367 DTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRR 426

Query: 326 SGVGYPPWNALVAQLPPVKGLWSGL 328
           SG G P W  +  +LPP+  + S L
Sbjct: 427 SGRGMPDWAEISKELPPMDDVLSKL 451

[Close]

BLAST of MC06g1772 vs. NCBI nr
Match: XP_022131239.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia] >XP_022131240.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia])

HSP 1 Score: 666 bits (1719), Expect = 2.15e-241
Identity = 334/336 (99.40%), Postives = 334/336 (99.40%), Query Frame = 0


Query: 1   MVVSMANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLRP 60
           MVVSMANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLR 
Sbjct: 1   MVVSMANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLRX 60

Query: 61  LQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120
           LQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ
Sbjct: 61  LQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120

Query: 121 LLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180
           LLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL
Sbjct: 121 LLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180

Query: 181 RVDQSKVIPLNSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVSSL 240
           RVDQSKVIPL SLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVSSL
Sbjct: 181 RVDQSKVIPLXSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVSSL 240

Query: 241 NFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRV 300
           NFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRV
Sbjct: 241 NFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRV 300

Query: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336
           RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of MC06g1772 vs. NCBI nr
Match: XP_022963501.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_022963502.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 575 bits (1482), Expect = 1.41e-204
Identity = 288/336 (85.71%), Postives = 311/336 (92.56%), Query Frame = 0


Query: 1   MVVSMANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLRP 60
           MVVSMA I S NN G PPH  RTRSHNA N KF R ICC VH   V F+ GPS+A+SLR 
Sbjct: 45  MVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNPVSFNFGPSVADSLRY 104

Query: 61  LQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120
           LQ  RRNLA+ TCSA++KPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ
Sbjct: 105 LQYRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 164

Query: 121 LLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180
           LLAALANSSRAE+VPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL
Sbjct: 165 LLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 224

Query: 181 RVDQSKVIPLNSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVSSL 240
           RVDQ+KVI +++LRGIARLVICAGPESFIMEAF++SEPFTE+LLERGV+V+PFATD SSL
Sbjct: 225 RVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSL 284

Query: 241 NFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRV 300
           NFEFDERE++KD+TTKRKRLWRLTPVYM +WSAWLD+QKKLAGVS++SPVYLSLRMDGRV
Sbjct: 285 NFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRV 344

Query: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336
           RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 345 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]

BLAST of MC06g1772 vs. NCBI nr
Match: XP_022967293.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima] >XP_022967294.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 573 bits (1477), Expect = 1.63e-204
Identity = 286/336 (85.12%), Postives = 310/336 (92.26%), Query Frame = 0


Query: 1   MVVSMANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLRP 60
           MVVSMA I S NN G PPH  RTRSHNAHN KF R ICC VH   V F+ GPS+A+SLR 
Sbjct: 1   MVVSMAIIPSCNNFGRPPHCSRTRSHNAHNLKFCRRICCHVHRNPVSFNFGPSVADSLRY 60

Query: 61  LQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120
           LQ  RRNLA+ TCSA++KPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ
Sbjct: 61  LQYRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120

Query: 121 LLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180
           LLAALAN+SRAE+VPDIL GLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKL
Sbjct: 121 LLAALANTSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLARLSREESLSNLKL 180

Query: 181 RVDQSKVIPLNSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVSSL 240
           RVDQ+KVI +++LRGIARLVICAGPES IMEAF++SEPFTE+LLERGV+V+PFATD SSL
Sbjct: 181 RVDQNKVITISTLRGIARLVICAGPESLIMEAFKTSEPFTERLLERGVLVIPFATDASSL 240

Query: 241 NFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRV 300
           NFEFDERE++KD+TTKRKRLWRLTPVYM +WSAWLD+QKKLAGVS++SPVYLSLRMDGRV
Sbjct: 241 NFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRV 300

Query: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336
           RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of MC06g1772 vs. NCBI nr
Match: XP_023554665.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023554666.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 573 bits (1478), Expect = 5.74e-204
Identity = 287/336 (85.42%), Postives = 310/336 (92.26%), Query Frame = 0


Query: 1   MVVSMANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLRP 60
           MVVSMA I S NN G PPH  RTRSHNA N KF R ICC VH   V F+ GPS+A+SLR 
Sbjct: 45  MVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRY 104

Query: 61  LQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120
           LQ  RRNLA+ TCSA++KPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ
Sbjct: 105 LQYRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 164

Query: 121 LLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180
           LLAALANSSRAE+VPDIL GLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKL
Sbjct: 165 LLAALANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLARLSREESLSNLKL 224

Query: 181 RVDQSKVIPLNSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVSSL 240
           RVDQ+KVI +++LRGIARLVICAGPESFIMEAF++SEPFTE+LLERGV+V+PFATD SSL
Sbjct: 225 RVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSL 284

Query: 241 NFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRV 300
           NFEFDERE++KD+TTKRKRLWRLTPVYM +WSAWLD+QKKLAGVS++SPVYLSLRMDGRV
Sbjct: 285 NFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRV 344

Query: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336
           RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 345 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]

BLAST of MC06g1772 vs. NCBI nr
Match: XP_038888898.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 561 bits (1446), Expect = 7.67e-200
Identity = 287/338 (84.91%), Postives = 309/338 (91.42%), Query Frame = 0


Query: 1   MVVSMA--NISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESL 60
           M VS++  NISS NN   PPH  RT      +FKF R ICC VH KT+ F+S P+L +SL
Sbjct: 1   MAVSLSTPNISSCNNITRPPHFSRTS-----DFKFRRRICCHVHRKTLSFNSSPTLPDSL 60

Query: 61  RPLQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
             L   RRNLANFTCSAA+KPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  PSLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLLAALANSSRAE+VPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQSKVIPLNSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVS 240
           KLRVDQ+KVIP+++LRGIARLVICAGPESFIMEAF+SSEPFTE+LLERGV+VVP ATDVS
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVS 240

Query: 241 SLNFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDG 300
           +LNFEFDERE++KD+TTKRKRLWRLTPVYM EWSAWLDEQKKLAGVS++SPVYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDMTTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 333

[Close]

BLAST of MC06g1772 vs. ExPASy TrEMBL
Match: A0A6J1BP58 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004502 PE=4 SV=1)

HSP 1 Score: 666 bits (1719), Expect = 1.04e-241
Identity = 334/336 (99.40%), Postives = 334/336 (99.40%), Query Frame = 0


Query: 1   MVVSMANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLRP 60
           MVVSMANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLR 
Sbjct: 1   MVVSMANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLRX 60

Query: 61  LQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120
           LQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ
Sbjct: 61  LQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120

Query: 121 LLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180
           LLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL
Sbjct: 121 LLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180

Query: 181 RVDQSKVIPLNSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVSSL 240
           RVDQSKVIPL SLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVSSL
Sbjct: 181 RVDQSKVIPLXSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVSSL 240

Query: 241 NFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRV 300
           NFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRV
Sbjct: 241 NFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRV 300

Query: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336
           RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of MC06g1772 vs. ExPASy TrEMBL
Match: A0A6J1HGA1 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463810 PE=4 SV=1)

HSP 1 Score: 575 bits (1482), Expect = 6.84e-205
Identity = 288/336 (85.71%), Postives = 311/336 (92.56%), Query Frame = 0


Query: 1   MVVSMANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLRP 60
           MVVSMA I S NN G PPH  RTRSHNA N KF R ICC VH   V F+ GPS+A+SLR 
Sbjct: 45  MVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNPVSFNFGPSVADSLRY 104

Query: 61  LQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120
           LQ  RRNLA+ TCSA++KPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ
Sbjct: 105 LQYRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 164

Query: 121 LLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180
           LLAALANSSRAE+VPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL
Sbjct: 165 LLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 224

Query: 181 RVDQSKVIPLNSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVSSL 240
           RVDQ+KVI +++LRGIARLVICAGPESFIMEAF++SEPFTE+LLERGV+V+PFATD SSL
Sbjct: 225 RVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSL 284

Query: 241 NFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRV 300
           NFEFDERE++KD+TTKRKRLWRLTPVYM +WSAWLD+QKKLAGVS++SPVYLSLRMDGRV
Sbjct: 285 NFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRV 344

Query: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336
           RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 345 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]

BLAST of MC06g1772 vs. ExPASy TrEMBL
Match: A0A6J1HWD0 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466857 PE=4 SV=1)

HSP 1 Score: 573 bits (1477), Expect = 7.87e-205
Identity = 286/336 (85.12%), Postives = 310/336 (92.26%), Query Frame = 0


Query: 1   MVVSMANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLRP 60
           MVVSMA I S NN G PPH  RTRSHNAHN KF R ICC VH   V F+ GPS+A+SLR 
Sbjct: 1   MVVSMAIIPSCNNFGRPPHCSRTRSHNAHNLKFCRRICCHVHRNPVSFNFGPSVADSLRY 60

Query: 61  LQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120
           LQ  RRNLA+ TCSA++KPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ
Sbjct: 61  LQYRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120

Query: 121 LLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180
           LLAALAN+SRAE+VPDIL GLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKL
Sbjct: 121 LLAALANTSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLARLSREESLSNLKL 180

Query: 181 RVDQSKVIPLNSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVSSL 240
           RVDQ+KVI +++LRGIARLVICAGPES IMEAF++SEPFTE+LLERGV+V+PFATD SSL
Sbjct: 181 RVDQNKVITISTLRGIARLVICAGPESLIMEAFKTSEPFTERLLERGVLVIPFATDASSL 240

Query: 241 NFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRV 300
           NFEFDERE++KD+TTKRKRLWRLTPVYM +WSAWLD+QKKLAGVS++SPVYLSLRMDGRV
Sbjct: 241 NFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRV 300

Query: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336
           RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of MC06g1772 vs. ExPASy TrEMBL
Match: A0A0A0L902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1)

HSP 1 Score: 560 bits (1442), Expect = 1.82e-199
Identity = 284/338 (84.02%), Postives = 308/338 (91.12%), Query Frame = 0


Query: 1   MVVSM--ANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESL 60
           M VS+   +ISSFNN  PPPH   T SHNA +FKF R   CRVH KTV FSS P L  SL
Sbjct: 1   MAVSLFTPSISSFNNIAPPPHFSPTPSHNASDFKFRRRSYCRVHRKTVSFSSSPRLPVSL 60

Query: 61  RPLQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           R L   RRNLANF CSAA+KPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLL ALANSSRA++VPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQSKVIPLNSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVS 240
           KLRVDQ+KVIP++ LRGIARLVICAGPESFI+EAF+SSEPFTE+LLERGV+VVP ATDV+
Sbjct: 181 KLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240

Query: 241 SLNFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDG 300
           +LNFEFD+RE++KD+TTKRKRLWRLTPVYM EWSAWLDEQKKLAGV+++SPVYLSLRMDG
Sbjct: 241 TLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of MC06g1772 vs. ExPASy TrEMBL
Match: A0A5D3BG35 (Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00670 PE=4 SV=1)

HSP 1 Score: 553 bits (1425), Expect = 7.05e-197
Identity = 281/338 (83.14%), Postives = 306/338 (90.53%), Query Frame = 0


Query: 1   MVVSMAN--ISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESL 60
           M VS++   +SSFNN  PPPH   T SHNA +FKF R  C  VH KTV FSS P L  SL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 61  RPLQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           R     RRNLAN+  SAA+KPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLL ALANSSRA++VPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQSKVIPLNSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVS 240
           KLRVDQ+KVIP+++LRGIARLVICAGPESF++EAF+SSEPFTEQLLERGV+VVP ATDV+
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240

Query: 241 SLNFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDG 300
           +LNFEFDERE++KD+T+KRK+LWRLTPVYM EWSAWLDEQKKLAGVS++SPVYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of MC06g1772 vs. TAIR 10
Match: AT4G28740.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 362.8 bits (930), Expect = 2.9e-100
Identity = 190/320 (59.38%), Postives = 242/320 (75.62%), Query Frame = 0


Query: 19  HSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLRPLQPMRRNLANFTCSAAEK 78
           H  +   + A     +R I    H + + FS         R  QP+     N  C AA++
Sbjct: 31  HISKQALYQAKESYSHRRISRHNHRERLDFSHRNHRLTITRKQQPLS---FNTVCFAADE 90

Query: 79  P-EISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEQVPDI 138
           P EIS+ A+IRSEVLSPFRSVRMFFYL FIASG+LGGLIAT++L+ ALAN +R+ +V +I
Sbjct: 91  PSEISADARIRSEVLSPFRSVRMFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLEI 150

Query: 139 LKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQ-SKVIPLNSLRGI 198
           +KGLG+D GA +LFAFLYF EN  KNAQ+ARLSREE+L  LK+RV++ +KVI +  LRG+
Sbjct: 151 VKGLGVDIGAASLFAFLYFNENKTKNAQMARLSREENLGKLKMRVEENNKVISVGDLRGV 210

Query: 199 ARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVSSLNFEFDEREDL-KDVTT 258
           ARLVICAGP  FI EAF+ S+ +T+ L+ERGVVVV +ATD +S   EFDE +   ++++ 
Sbjct: 211 ARLVICAGPAEFIEEAFKRSKEYTQGLVERGVVVVAYATDGNSPVLEFDETDIADEEMSQ 270

Query: 259 KRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRVRGSGVGYPPWNALVA 318
           +RK+LWR+TPV++PEW  WL+EQKKLA VS++SPVYLSLR+DGRVR SGVGYPPW A VA
Sbjct: 271 RRKKLWRVTPVFVPEWEKWLNEQKKLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFVA 330

Query: 319 QLPPVKGLWSGLLDGMDGRV 336
           QLPPVKG+W+GLLDGMDGRV
Sbjct: 331 QLPPVKGMWTGLLDGMDGRV 347

[Close]

BLAST of MC06g1772 vs. TAIR 10
Match: AT1G02910.1 (tetratricopeptide repeat (TPR)-containing protein )

HSP 1 Score: 132.9 bits (333), Expect = 4.9e-31
Identity = 82/265 (30.94%), Postives = 130/265 (49.06%), Query Frame = 0


Query: 86  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEQVPDILKGLGIDF 145
           K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ 
Sbjct: 187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query: 146 GAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQSKVIPLNSLRGIARLVICAGP 205
           G + +   L+  EN  +  Q+ +++R+E+LS L LR+  ++V+ L  LR   R VI AG 
Sbjct: 247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query: 206 ESFIMEAFRSSEPFTEQLLERGVVVVPF---------------------ATDVSSLNFEF 265
           +  +  A + ++ F  +LL RGV++VP                      AT + S+  +F
Sbjct: 307 KETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDF 366

Query: 266 DEREDLKDVTTKRKR--LWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRVRG 325
           D R       +K K    ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR 
Sbjct: 367 DTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRR 426

Query: 326 SGVGYPPWNALVAQLPPVKGLWSGL 328
           SG G P W  +  +LPP+  + S L
Sbjct: 427 SGRGMPDWAEISKELPPMDDVLSKL 451

The following BLAST results are available for this feature:

BLAST of MC06g1772 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRY4	6.8e-30	30.94	Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of MC06g1772 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131239.1	2.15e-241	99.40	protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia] >XP_0221312...	[more]
XP_022963501.1	1.41e-204	85.71	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_02296350...	[more]
XP_022967293.1	1.63e-204	85.12	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima] >XP_022967294....	[more]
XP_023554665.1	5.74e-204	85.42	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_...	[more]
XP_038888898.1	7.67e-200	84.91	protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899...	[more]

BLAST of MC06g1772 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BP58	1.04e-241	99.40	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1HGA1	6.84e-205	85.71	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HWD0	7.87e-205	85.12	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0L902	1.82e-199	84.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1	[more]
A0A5D3BG35	7.05e-197	83.14	Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MC06g1772 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28740.1	2.9e-100	59.38	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G02910.1	4.9e-31	30.94	tetratricopeptide repeat (TPR)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021883	Protein LOW PSII ACCUMULATION 1-like	PFAM	PF11998	DUF3493	coord: 82..159 e-value: 3.9E-27 score: 94.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR35498:SF1	LOW PSII ACCUMULATION-LIKE PROTEIN	coord: 44..334
None	No IPR available	PANTHER	PTHR35498	PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC	coord: 44..334

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g1772.1	MC06g1772.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane