MC06g1547 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g1547
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein L18
Location	MC06: 22718172 .. 22719090 (+)
RNA-Seq Expression	MC06g1547
Synteny	MC06g1547

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATTCCTCCTCCAGTTAGGCCAGCAAGAGTAACCCAATATCTGAAGCCATATGTGTTGAAGATGCACTTCACAAACAAGTACGTGAGTGCTCAGGTGGTCCACTCGGAAACGGCCACGGTTGCTTCTGCTGCGAGCTCGCAGGAGAAGGCGCTGAGGGCGAGTATGGAGTCGACTAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAGTTGTTGGGGGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTCCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTTAGGGAAGCAGGTATTAAGCTCCTTTGAATTCAATCTCTGCTGCATTTGGCTTCGCCCTCCTTCTGATTAAAATCACTGCTCAATATTATCTGTTTTGATGCATTATTGGACTTTTTGTCCTTGTCTCGAGTTTCAAATCATTGATCGGCCGGAGTAGTGCTTTTAGGTGAAACATTTCTTTTACGAGCACTTTTAGAAAATAAACACAAATGAAGAGGTAGTTCATCTAAACGTAATTTCAAGTGTTGGAATTCTTTAAATCATCTTTCTACTAGGGGCGTTGTGTTTGGCTTTTGACCAGATCAATAACCAAAGTATACCAAAGGAATTAAATTGTGAGGGTTCATGTATTATGTATATAAATTCTTTTTGTTTTTTGACAATTGTGTGTTTGGACTAACTTTCTGTACTTCGACTAATAGGGACAATAATATGACTCTACTGCATCTGGTTGTCGAGGAAACTTATAGGATATTAGATTTTAGGTAGGTGGTCACCATTGTTTGAACTTATTACAACTAAGTTGTGTACTATTTACATTGGCTCTTATTGTATTACGTATATAAATCGAATCAAATAAACCATACATGGAACTTGGTCT

mRNA sequence

ATGGTGATTCCTCCTCCAGTTAGGCCAGCAAGAGTAACCCAATATCTGAAGCCATATGTGTTGAAGATGCACTTCACAAACAAGTACGTGAGTGCTCAGGTGGTCCACTCGGAAACGGCCACGGTTGCTTCTGCTGCGAGCTCGCAGGAGAAGGCGCTGAGGGCGAGTATGGAGTCGACTAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAGTTGTTGGGGGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTCCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTTAGGGAAGCAGGTATTAAGCTCCTTTGAATTCAATCTCTGCTGCATTTGGCTTCGCCCTCCTTCTGATTAAAATCACTGCTCAATATTATCTGTTTTGATGCATTATTGGACTTTTTGTCCTTGTCTCGAGTTTCAAATCATTGATCGGCCGGAGTAGTGCTTTTAGGTGAAACATTTCTTTTACGAGCACTTTTAGAAAATAAACACAAATGAAGAGGTAGTTCATCTAAACGTAATTTCAAGTGTTGGAATTCTTTAAATCATCTTTCTACTAGGGGCGTTGTGTTTGGCTTTTGACCAGATCAATAACCAAAGTATACCAAAGGAATTAAATTGTGAGGGTTCATGTATTATGTATATAAATTCTTTTTGTTTTTTGACAATTGTGTGTTTGGACTAACTTTCTGTACTTCGACTAATAGGGACAATAATATGACTCTACTGCATCTGGTTGTCGAGGAAACTTATAGGATATTAGATTTTAGGTAGGTGGTCACCATTGTTTGAACTTATTACAACTAAGTTGTGTACTATTTACATTGGCTCTTATTGTATTACGTATATAAATCGAATCAAATAAACCATACATGGAACTTGGTCT

Coding sequence (CDS)

ATGGTGATTCCTCCTCCAGTTAGGCCAGCAAGAGTAACCCAATATCTGAAGCCATATGTGTTGAAGATGCACTTCACAAACAAGTACGTGAGTGCTCAGGTGGTCCACTCGGAAACGGCCACGGTTGCTTCTGCTGCGAGCTCGCAGGAGAAGGCGCTGAGGGCGAGTATGGAGTCGACTAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAGTTGTTGGGGGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTCCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTTAGGGAAGCAGGTATTAAGCTCCTTTGA

Protein sequence

MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL

Homology

[Close]

BLAST of MC06g1547 vs. ExPASy Swiss-Prot
Match: P52863 (50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.8e-10
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 21  LKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T ++V AQV+ S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+  V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVETVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of MC06g1547 vs. ExPASy Swiss-Prot
Match: A8IAP8 (50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) OX=438753 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 21  LKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T+K++ AQ++         AASS EK LR+S+++  DV AA  IGKL+ ER   K
Sbjct: 29  LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAAKAIGKLVAERATAK 88

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+ AV V  +    YHG+VKA+ +  RE G++
Sbjct: 89  GVTAV-VFDRGAYIYHGRVKALAEGAREGGLQ 119

[Close]

BLAST of MC06g1547 vs. ExPASy Swiss-Prot
Match: B7VLE1 (50S ribosomal protein L18 OS=Vibrio atlanticus (strain LGP32) OX=575788 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 21  LKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T ++V AQV+ +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVISANGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAVAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+ +V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVASVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of MC06g1547 vs. ExPASy Swiss-Prot
Match: B6EPU1 (50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-09
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 21  LKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T ++  AQV+    + V +AAS+ EKA+R  + +T + AAA  IGKL+ ER + K
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQVGNTSNKAAAVAIGKLIAERAIEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           GI  V       Q YHG+V A+ DS REAG+K
Sbjct: 86  GITNVAFDRSGFQ-YHGRVAALADSAREAGLK 116

[Close]

BLAST of MC06g1547 vs. ExPASy Swiss-Prot
Match: A7MWH4 (50S ribosomal protein L18 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX=338187 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-09
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 21  LKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T ++V AQV+ +  + V +AAS+ EKA+R  ++ T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNVDAAKAVGKAVAERALEK 85

Query: 81  GIPAVCVHLKREQKYHGKVKAVVDSVREAGIK 113
           G+ AV       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVTAVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of MC06g1547 vs. NCBI nr
Match: XP_022145949.1 (uncharacterized protein LOC111015286 [Momordica charantia])

HSP 1 Score: 214 bits (545), Expect = 9.10e-70
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60
           MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST
Sbjct: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of MC06g1547 vs. NCBI nr
Match: KAG6590442.1 (hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023978.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209 bits (531), Expect = 1.24e-67
Identity = 109/114 (95.61%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60
           MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR+SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of MC06g1547 vs. NCBI nr
Match: XP_022961444.1 (uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 uncharacterized protein LOC111462025 [Cucurbita moschata])

HSP 1 Score: 208 bits (530), Expect = 1.77e-67
Identity = 109/114 (95.61%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60
           MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR+SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of MC06g1547 vs. NCBI nr
Match: XP_022968817.1 (uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968820.1 uncharacterized protein LOC111467940 [Cucurbita maxima])

HSP 1 Score: 207 bits (527), Expect = 5.06e-67
Identity = 108/114 (94.74%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60
           MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEK LR+SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of MC06g1547 vs. NCBI nr
Match: XP_023515963.1 (uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207 bits (526), Expect = 7.20e-67
Identity = 107/114 (93.86%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60
           MVIPPPVRP R+TQYLKPY+LKMHFTNKYVSAQV+HS+TATVASAASSQEKALR+SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYILKMHFTNKYVSAQVIHSKTATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of MC06g1547 vs. ExPASy TrEMBL
Match: A0A6J1CWR7 (uncharacterized protein LOC111015286 OS=Momordica charantia OX=3673 GN=LOC111015286 PE=4 SV=1)

HSP 1 Score: 214 bits (545), Expect = 4.41e-70
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60
           MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST
Sbjct: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of MC06g1547 vs. ExPASy TrEMBL
Match: A0A6J1HE21 (uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC111462025 PE=4 SV=1)

HSP 1 Score: 208 bits (530), Expect = 8.55e-68
Identity = 109/114 (95.61%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60
           MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR+SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of MC06g1547 vs. ExPASy TrEMBL
Match: A0A6J1I0R8 (uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940 PE=4 SV=1)

HSP 1 Score: 207 bits (527), Expect = 2.45e-67
Identity = 108/114 (94.74%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60
           MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEK LR+SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of MC06g1547 vs. ExPASy TrEMBL
Match: A0A6J1HZV8 (uncharacterized protein LOC111469142 OS=Cucurbita maxima OX=3661 GN=LOC111469142 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 7.03e-67
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60
           MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETAT+ASAASSQEKALR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114
           RDVAAA KIGKLLGERLLLKGIPAVCVHLKREQKYHGK+KAV+DSVREAGIKLL
Sbjct: 61  RDVAAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 114

[Close]

BLAST of MC06g1547 vs. ExPASy TrEMBL
Match: A0A5D3DYC1 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00840 PE=4 SV=1)

HSP 1 Score: 204 bits (518), Expect = 5.78e-66
Identity = 105/114 (92.11%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60
           MVIPPP++P R+ QYLKPYVLKMHFTNK+VSAQV+HSETATVASAASSQEKALR+SMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of MC06g1547 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 168.7 bits (426), Expect = 2.7e-42
Identity = 87/114 (76.32%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60
           MVIPP VRP R+  YLKPYVLKMHFTNK+V AQV+HS TATVA +ASSQEKALR +M+ T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 115
           RDVAAA+KIGK+LGERLL+K IPAV + +K+EQ+YHGKVKAV+DSVREAG+KLL
Sbjct: 61  RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

[Close]

BLAST of MC06g1547 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 61.2 bits (147), Expect = 6.1e-10
Identity = 32/101 (31.68%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 11  RVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIG 70
           R   Y++P++L + F+ K++ A+V+H  T+ V S A++  + +R ++ S  D  A   IG
Sbjct: 83  RTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIG 142

Query: 71  KLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI 112
           KL+ ER +   + AV    ++ ++  GK+  V+D+++E GI
Sbjct: 143 KLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

[Close]

BLAST of MC06g1547 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-07
Identity = 29/101 (28.71%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 11  RVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIG 70
           R   Y++P+ L +  + ++VSA + H  T    + A +  K ++A + S  D+ A   IG
Sbjct: 82  RTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIG 141

Query: 71  KLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI 112
           ++L ER     +       + + K+ GK++AVV S+ + GI
Sbjct: 142 RILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 182

[Close]

BLAST of MC06g1547 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-07
Identity = 29/101 (28.71%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 11  RVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIG 70
           R   Y++P+ L +  + ++VSA + H  T    + A +  K ++A + S  D+ A   IG
Sbjct: 127 RTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIG 186

Query: 71  KLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI 112
           ++L ER     +       + + K+ GK++AVV S+ + GI
Sbjct: 187 RILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of MC06g1547 vs. TAIR 10
Match: AT3G45020.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 45.1 bits (105), Expect = 4.5e-05
Identity = 35/111 (31.53%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 16  LKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTR--DVAAAAKIGKLL 75
           LK YVL++  + KY++A VV      + + AS+ E  ++ S+E  R  +  AAA +G++L
Sbjct: 4   LKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVGEVL 63

Query: 76  GERLLLKGIP-----AVCVHLKREQKYHG-----KVKAVVDSVREAGIKLL 115
             RL ++G+       +   +K+E +  G     KV AV++S+R  G+ L+
Sbjct: 64  AMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLI 114

The following BLAST results are available for this feature:

BLAST of MC06g1547 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52863	7.8e-10	43.48	50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1	[more]
A8IAP8	1.3e-09	42.39	50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5...	[more]
B7VLE1	1.3e-09	42.39	50S ribosomal protein L18 OS=Vibrio atlanticus (strain LGP32) OX=575788 GN=rplR ...	[more]
B6EPU1	1.7e-09	44.57	50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 G...	[more]
A7MWH4	1.7e-09	43.48	50S ribosomal protein L18 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX...	[more]

BLAST of MC06g1547 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145949.1	9.10e-70	100.00	uncharacterized protein LOC111015286 [Momordica charantia]	[more]
KAG6590442.1	1.24e-67	95.61	hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022961444.1	1.77e-67	95.61	uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 unchar...	[more]
XP_022968817.1	5.06e-67	94.74	uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharac...	[more]
XP_023515963.1	7.20e-67	93.86	uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MC06g1547 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWR7	4.41e-70	100.00	uncharacterized protein LOC111015286 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1HE21	8.55e-68	95.61	uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC1114620...	[more]
A0A6J1I0R8	2.45e-67	94.74	uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940...	[more]
A0A6J1HZV8	7.03e-67	92.98	uncharacterized protein LOC111469142 OS=Cucurbita maxima OX=3661 GN=LOC111469142...	[more]
A0A5D3DYC1	5.78e-66	92.11	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of MC06g1547 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27820.1	2.7e-42	76.32	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	6.1e-10	31.68	Ribosomal L18p/L5e family protein	[more]
AT1G08845.1	2.8e-07	28.71	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	2.8e-07	28.71	Ribosomal L18p/L5e family protein	[more]
AT3G45020.1	4.5e-05	31.53	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 20..113 e-value: 2.7E-17 score: 63.2
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..114
None	No IPR available	GENE3D	3.30.420.100		coord: 8..113 e-value: 9.5E-25 score: 89.3
None	No IPR available	PANTHER	PTHR12899:SF15	OS01G0256600 PROTEIN	coord: 1..114
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 11..111 e-value: 1.5021E-26 score: 92.6031
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 13..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g1547.1	MC06g1547.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome