MC06g1333 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g1333
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	MC06: 20362020 .. 20362358 (-)
RNA-Seq Expression	MC06g1333
Synteny	MC06g1333

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATATTTTCCTTCATTGCCCTTTTATTGCAAGTTTATGGCATCGTCTCCTCTACATTTTTCAGGTCCAAAGTGCAATTCCTTGCCAAGTCGATTTATTCATCACAGAAAACCTTAGTATTCATCTCTCTAACCAAAAATATGTATTATTGAGCAATGCTATAAGTGCTATTCTTTGGCATACTTGGTTAGAAAGAAATCACCTGAACCTTTACAGGTTTTTCGAAGACTACAACCAACATTTGGGAGGACATCACATCACTGCTTCTCTTTGGTCTACAAAATCCAATCTTTTTTGTACTTACGATTCATCTATTATATCTCTTAATTGGAGTGCTTTT

mRNA sequence

CATATTTTCCTTCATTGCCCTTTTATTGCAAGTTTATGGCATCGTCTCCTCTACATTTTTCAGGTCCAAAGTGCAATTCCTTGCCAAGTCGATTTATTCATCACAGAAAACCTTAGTATTCATCTCTCTAACCAAAAATATGTATTATTGAGCAATGCTATAAGTGCTATTCTTTGGCATACTTGGTTAGAAAGAAATCACCTGAACCTTTACAGGTTTTTCGAAGACTACAACCAACATTTGGGAGGACATCACATCACTGCTTCTCTTTGGTCTACAAAATCCAATCTTTTTTGTACTTACGATTCATCTATTATATCTCTTAATTGGAGTGCTTTT

Coding sequence (CDS)

CATATTTTCCTTCATTGCCCTTTTATTGCAAGTTTATGGCATCGTCTCCTCTACATTTTTCAGGTCCAAAGTGCAATTCCTTGCCAAGTCGATTTATTCATCACAGAAAACCTTAGTATTCATCTCTCTAACCAAAAATATGTATTATTGAGCAATGCTATAAGTGCTATTCTTTGGCATACTTGGTTAGAAAGAAATCACCTGAACCTTTACAGGTTTTTCGAAGACTACAACCAACATTTGGGAGGACATCACATCACTGCTTCTCTTTGGTCTACAAAATCCAATCTTTTTTGTACTTACGATTCATCTATTATATCTCTTAATTGGAGTGCTTTT

Protein sequence

HIFLHCPFIASLWHRLLYIFQVQSAIPCQVDLFITENLSIHLSNQKYVLLSNAISAILWHTWLERNHLNLYRFFEDYNQHLGGHHITASLWSTKSNLFCTYDSSIISLNWSAF

Homology

[Close]

BLAST of MC06g1333 vs. NCBI nr
Match: RVW65318.1 (hypothetical protein CK203_058130 [Vitis vinifera])

HSP 1 Score: 55.5 bits (132), Expect = 1.53e-06
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = 0


Query: 1   HIFLHCPFIASLWHRLLYIFQVQSAIPCQV-DLFITENLSIHLSNQKYVLLSNAISAILW 60
           H+FLHC     LWHRL  + ++    P  + D+F T       S +  VL  +A  A++W
Sbjct: 69  HLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMW 128

Query: 61  HTWLERNHLNLYRFFEDYNQHLG----GHHITASLWSTKSNLFCTYDSSIISLNWSA 112
             W ERN     R FED  ++ G         ASLW+  S +F     +++ L+W A
Sbjct: 129 VVWRERNA----RIFEDKARNSGCLWDSIRFLASLWAFCSKVFKGIPLNMLQLDWLA 181

[Close]

BLAST of MC06g1333 vs. NCBI nr
Match: RVW92607.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 55.5 bits (132), Expect = 2.27e-06
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = 0


Query: 1   HIFLHCPFIASLWHRLLYIFQVQSAIPCQV-DLFITENLSIHLSNQKYVLLSNAISAILW 60
           H+FLHC     LWHRL  + ++    P  + D+F T       S +  VL  +A  A++W
Sbjct: 104 HLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMW 163

Query: 61  HTWLERNHLNLYRFFEDYNQHLG----GHHITASLWSTKSNLFCTYDSSIISLNWSA 112
             W ERN     R FED  ++ G         ASLW+  S +F     +++ L+W A
Sbjct: 164 VVWRERNA----RIFEDKARNSGCLWDSIRFLASLWAFCSKVFKGIPLNMLQLDWLA 216

[Close]

BLAST of MC06g1333 vs. NCBI nr
Match: RVX23716.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 55.5 bits (132), Expect = 4.10e-06
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = 0


Query: 1   HIFLHCPFIASLWHRLLYIFQVQSAIPCQV-DLFITENLSIHLSNQKYVLLSNAISAILW 60
           H+FLHC     LWHRL  + ++    P  + D+F T       S +  VL  +A  A++W
Sbjct: 280 HLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMW 339

Query: 61  HTWLERNHLNLYRFFEDYNQHLG----GHHITASLWSTKSNLFCTYDSSIISLNWSA 112
             W ERN     R FED  ++ G         ASLW+  S +F     +++ L+W A
Sbjct: 340 VVWRERNA----RIFEDKARNSGCLWDSIRFLASLWAFCSKVFKGIPLNMLQLDWLA 392

[Close]

BLAST of MC06g1333 vs. NCBI nr
Match: RVW44814.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 55.5 bits (132), Expect = 4.28e-06
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = 0


Query: 1   HIFLHCPFIASLWHRLLYIFQVQSAIPCQV-DLFITENLSIHLSNQKYVLLSNAISAILW 60
           H+FLHC     LWHRL  + ++    P  + D+F T       S +  VL  +A  A++W
Sbjct: 403 HLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMW 462

Query: 61  HTWLERNHLNLYRFFEDYNQHLG----GHHITASLWSTKSNLFCTYDSSIISLNWSA 112
             W ERN     R FED  ++ G         ASLW+  S +F     +++ L+W A
Sbjct: 463 VVWRERNA----RIFEDKARNSGCLWDSIRFLASLWAFCSKVFKGIPLNMLQLDWLA 515

[Close]

BLAST of MC06g1333 vs. NCBI nr
Match: RVW79087.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 54.7 bits (130), Expect = 4.36e-06
Identity = 37/115 (32.17%), Postives = 55/115 (47.83%), Query Frame = 0


Query: 1   HIFLHCPFIASLWHRLLYIFQVQSAIPCQV-DLFITENLSIHLSNQKYVLLSNAISAILW 60
           H+FLHC     LWHRL  + ++    P  + D+F T       S +  VL  +A  A++W
Sbjct: 104 HLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMW 163

Query: 61  HTWLERNHLNLYRFFEDYNQHLG----GHHITASLWSTKSNLFCTYDSSIISLNW 110
             W ERN     R FED  ++ G         ASLW+  S +F     +++ L+W
Sbjct: 164 VVWRERNA----RIFEDKARNSGCLWDSIRFLASLWAFCSKVFKGIPLNMLQLDW 214

[Close]

BLAST of MC06g1333 vs. ExPASy TrEMBL
Match: A0A438FZH6 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_058130 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.40e-07
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = 0


Query: 1   HIFLHCPFIASLWHRLLYIFQVQSAIPCQV-DLFITENLSIHLSNQKYVLLSNAISAILW 60
           H+FLHC     LWHRL  + ++    P  + D+F T       S +  VL  +A  A++W
Sbjct: 69  HLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMW 128

Query: 61  HTWLERNHLNLYRFFEDYNQHLG----GHHITASLWSTKSNLFCTYDSSIISLNWSA 112
             W ERN     R FED  ++ G         ASLW+  S +F     +++ L+W A
Sbjct: 129 VVWRERNA----RIFEDKARNSGCLWDSIRFLASLWAFCSKVFKGIPLNMLQLDWLA 181

[Close]

BLAST of MC06g1333 vs. ExPASy TrEMBL
Match: A0A438I7G2 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_1099 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.10e-06
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = 0


Query: 1   HIFLHCPFIASLWHRLLYIFQVQSAIPCQV-DLFITENLSIHLSNQKYVLLSNAISAILW 60
           H+FLHC     LWHRL  + ++    P  + D+F T       S +  VL  +A  A++W
Sbjct: 104 HLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMW 163

Query: 61  HTWLERNHLNLYRFFEDYNQHLG----GHHITASLWSTKSNLFCTYDSSIISLNWSA 112
             W ERN     R FED  ++ G         ASLW+  S +F     +++ L+W A
Sbjct: 164 VVWRERNA----RIFEDKARNSGCLWDSIRFLASLWAFCSKVFKGIPLNMLQLDWLA 216

[Close]

BLAST of MC06g1333 vs. ExPASy TrEMBL
Match: A0A438KR90 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_1170 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.99e-06
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = 0


Query: 1   HIFLHCPFIASLWHRLLYIFQVQSAIPCQV-DLFITENLSIHLSNQKYVLLSNAISAILW 60
           H+FLHC     LWHRL  + ++    P  + D+F T       S +  VL  +A  A++W
Sbjct: 280 HLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMW 339

Query: 61  HTWLERNHLNLYRFFEDYNQHLG----GHHITASLWSTKSNLFCTYDSSIISLNWSA 112
             W ERN     R FED  ++ G         ASLW+  S +F     +++ L+W A
Sbjct: 340 VVWRERNA----RIFEDKARNSGCLWDSIRFLASLWAFCSKVFKGIPLNMLQLDWLA 392

[Close]

BLAST of MC06g1333 vs. ExPASy TrEMBL
Match: A0A438EAW3 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_197 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.07e-06
Identity = 38/117 (32.48%), Postives = 56/117 (47.86%), Query Frame = 0


Query: 1   HIFLHCPFIASLWHRLLYIFQVQSAIPCQV-DLFITENLSIHLSNQKYVLLSNAISAILW 60
           H+FLHC     LWHRL  + ++    P  + D+F T       S +  VL  +A  A++W
Sbjct: 403 HLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMW 462

Query: 61  HTWLERNHLNLYRFFEDYNQHLG----GHHITASLWSTKSNLFCTYDSSIISLNWSA 112
             W ERN     R FED  ++ G         ASLW+  S +F     +++ L+W A
Sbjct: 463 VVWRERNA----RIFEDKARNSGCLWDSIRFLASLWAFCSKVFKGIPLNMLQLDWLA 515

[Close]

BLAST of MC06g1333 vs. ExPASy TrEMBL
Match: A0A438H449 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_132 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.11e-06
Identity = 37/115 (32.17%), Postives = 55/115 (47.83%), Query Frame = 0


Query: 1   HIFLHCPFIASLWHRLLYIFQVQSAIPCQV-DLFITENLSIHLSNQKYVLLSNAISAILW 60
           H+FLHC     LWHRL  + ++    P  + D+F T       S +  VL  +A  A++W
Sbjct: 104 HLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMW 163

Query: 61  HTWLERNHLNLYRFFEDYNQHLG----GHHITASLWSTKSNLFCTYDSSIISLNW 110
             W ERN     R FED  ++ G         ASLW+  S +F     +++ L+W
Sbjct: 164 VVWRERNA----RIFEDKARNSGCLWDSIRFLASLWAFCSKVFKGIPLNMLQLDW 214

The following BLAST results are available for this feature:

BLAST of MC06g1333 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g1333 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW65318.1	1.53e-06	32.48	hypothetical protein CK203_058130 [Vitis vinifera]	[more]
RVW92607.1	2.27e-06	32.48	putative ribonuclease H protein [Vitis vinifera]	[more]
RVX23716.1	4.10e-06	32.48	putative ribonuclease H protein [Vitis vinifera]	[more]
RVW44814.1	4.28e-06	32.48	putative ribonuclease H protein [Vitis vinifera]	[more]
RVW79087.1	4.36e-06	32.17	putative ribonuclease H protein [Vitis vinifera]	[more]

BLAST of MC06g1333 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438FZH6	7.40e-07	32.48	zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_058130 PE=4...	[more]
A0A438I7G2	1.10e-06	32.48	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_1099 ...	[more]
A0A438KR90	1.99e-06	32.48	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_1170 ...	[more]
A0A438EAW3	2.07e-06	32.48	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_197 P...	[more]
A0A438H449	2.11e-06	32.17	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_132 P...	[more]

BLAST of MC06g1333 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g1333.1	MC06g1333.1	mRNA