MC06g1315 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g1315
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionTransmembrane protein
LocationMC06: 20027410 .. 20027616 (+)
RNA-Seq ExpressionMC06g1315
SyntenyMC06g1315
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCAAAACATTGGCTTTAATGGCAGTGAAAAGGCAAACAGCAGCTTCAAGATCCGCGAGGCCATTGATCAGACTGCAGCACGGAGTCACCGGCGGGTGGCCAATGGAAACATTGACAAGACCACCGAGCAATTTGGCACAGACGCCGAGTTTAAGAGTATTTTTGGGGCATTTCTTTCCTTGCTCGGGTGAAGGCGTGGGGTCGGGG

mRNA sequence

CCCAAAACATTGGCTTTAATGGCAGTGAAAAGGCAAACAGCAGCTTCAAGATCCGCGAGGCCATTGATCAGACTGCAGCACGGAGTCACCGGCGGGTGGCCAATGGAAACATTGACAAGACCACCGAGCAATTTGGCACAGACGCCGAGTTTAAGAGTATTTTTGGGGCATTTCTTTCCTTGCTCGGGTGAAGGCGTGGGGTCGGGG

Coding sequence (CDS)

CCCAAAACATTGGCTTTAATGGCAGTGAAAAGGCAAACAGCAGCTTCAAGATCCGCGAGGCCATTGATCAGACTGCAGCACGGAGTCACCGGCGGGTGGCCAATGGAAACATTGACAAGACCACCGAGCAATTTGGCACAGACGCCGAGTTTAAGAGTATTTTTGGGGCATTTCTTTCCTTGCTCGGGTGAAGGCGTGGGGTCGGGG

Protein sequence

PKTLALMAVKRQTAASRSARPLIRLQHGVTGGWPMETLTRPPSNLAQTPSLRVFLGHFFPCSGEGVGSG
Homology
BLAST of MC06g1315 vs. NCBI nr
Match: KAF3492506.1 (hypothetical protein DY000_02054766, partial [Brassica cretica])

HSP 1 Score: 84.0 bits (206), Expect = 1.18e-18
Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 0

Query: 1  PKTLALMAVKRQTAASRSARPLIRLQHGVTGGWPMETLTRPPSNLAQTPSLRVFLGHF-F 60
          P+TLAL AV+RQTAAS SA P +RLQHG+TGG P     RP S LAQTPSLRV LGHF  
Sbjct: 27 PRTLALRAVQRQTAASTSASPWMRLQHGLTGGLPRVKSRRPLSTLAQTPSLRVSLGHFPL 86

Query: 61 PCSGEGVGSG 69
          P  G GVG G
Sbjct: 87 PELGLGVGLG 96

BLAST of MC06g1315 vs. NCBI nr
Match: KAF2574527.1 (hypothetical protein F2Q70_00001605 [Brassica cretica])

HSP 1 Score: 82.0 bits (201), Expect = 1.67e-18
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 1  PKTLALMAVKRQTAASRSARPLIRLQHGVTGGWPMETLTRPPSNLAQTPSLRVFLGHFFP 60
          P+ LAL AV+RQ AASRSA PL+R+QHG TGG+P   L+RP S LAQTPSLR  LGH   
Sbjct: 6  PRMLALSAVQRQAAASRSASPLMRVQHGFTGGFPRVMLSRPLSTLAQTPSLRASLGHL-A 65

Query: 61 CSGEGVGSG 69
           +G GVG G
Sbjct: 66 VTGLGVGVG 73

BLAST of MC06g1315 vs. NCBI nr
Match: KAF3555844.1 (hypothetical protein F2Q69_00013986 [Brassica cretica])

HSP 1 Score: 83.2 bits (204), Expect = 2.09e-18
Identity = 44/72 (61.11%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 1  PKTLALMAVKRQTAASRSARPLIRLQHGVTGGWPMETLTRPPSNLAQTPSLRVFLGHFFP 60
          P+ LAL AV+RQ AASRSA P I +QHG TGGWP  TL+RP S LAQTPS R  LGH   
Sbjct: 6  PRILALSAVQRQAAASRSASPFISVQHGSTGGWPRVTLSRPLSTLAQTPSFRASLGHLAV 65

Query: 61 CS---GEGVGSG 69
               G G+GSG
Sbjct: 66 AGLGLGVGLGSG 77

BLAST of MC06g1315 vs. NCBI nr
Match: KAG8486674.1 (hypothetical protein CXB51_019983 [Gossypium anomalum])

HSP 1 Score: 83.2 bits (204), Expect = 2.20e-18
Identity = 47/69 (68.12%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 1  PKTLALMAVKRQTAASRSARPLIRLQHGVTGGWPMETLTRPPSNLAQTPSLRVFLGHFFP 60
          PKTLAL AV+RQTAASRSARP  R QHG TGG P  TLT+P S  AQTP+LRV  GH   
Sbjct: 2  PKTLALSAVQRQTAASRSARPWRREQHGCTGGEPTVTLTKP-STSAQTPNLRVSCGHLPE 61

Query: 61 CSGEGVGSG 69
            GEGVG G
Sbjct: 62 GDGEGVGFG 69

BLAST of MC06g1315 vs. NCBI nr
Match: PON92988.1 (hypothetical protein TorRG33x02_112670 [Trema orientale])

HSP 1 Score: 82.4 bits (202), Expect = 4.89e-18
Identity = 43/66 (65.15%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 1  PKTLALMAVKRQTAASRSARPLIRLQHGVTGGWPMETLTRPPSNLAQTPSLRVFLGHFFP 60
          P+ LALMAV+RQ AASRSARP IR+Q GVTGG PM TLT PPS  A TP+ R  LGH   
Sbjct: 6  PRILALMAVQRQIAASRSARPWIRVQQGVTGGVPMVTLTNPPSKSAHTPNFRASLGHLPE 65

Query: 61 CSGEGV 66
            G GV
Sbjct: 66 DEGLGV 71

BLAST of MC06g1315 vs. ExPASy TrEMBL
Match: A0A2P5F5C4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_112670 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.37e-18
Identity = 43/66 (65.15%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 1  PKTLALMAVKRQTAASRSARPLIRLQHGVTGGWPMETLTRPPSNLAQTPSLRVFLGHFFP 60
          P+ LALMAV+RQ AASRSARP IR+Q GVTGG PM TLT PPS  A TP+ R  LGH   
Sbjct: 6  PRILALMAVQRQIAASRSARPWIRVQQGVTGGVPMVTLTNPPSKSAHTPNFRASLGHLPE 65

Query: 61 CSGEGV 66
            G GV
Sbjct: 66 DEGLGV 71

BLAST of MC06g1315 vs. ExPASy TrEMBL
Match: A0A5D2BQE9 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D08G218000v1 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 9.10e-18
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 1  PKTLALMAVKRQTAASRSARPLIRLQHGVTGGWPMETLTRPPSNLAQTPSLRVFLGHFFP 60
          PKTLAL+AV+RQTAASRSARP  R QHG TGG P+ TLT+P S  A TP+LR  LGH   
Sbjct: 2  PKTLALIAVQRQTAASRSARPWRREQHGCTGGEPIVTLTKP-STFAHTPNLRASLGHLPF 61

Query: 61 CSGEGVGSG 69
            G+G G G
Sbjct: 62 AEGDGNGVG 69

BLAST of MC06g1315 vs. ExPASy TrEMBL
Match: A0A5B6W3Q8 (Transmembrane protein OS=Gossypium australe OX=47621 GN=EPI10_025979 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.99e-17
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 1  PKTLALMAVKRQTAASRSARPLIRLQHGVTGGWPMETLTRPPSNLAQTPSLRVFLGHFFP 60
          PKTLAL+AV+RQTAASRS RP  R QHG+TGG PM  LT+P S LA TP+LR  LGH  P
Sbjct: 33 PKTLALIAVQRQTAASRSTRPSRREQHGITGGEPMTGLTKP-STLAHTPNLRASLGHL-P 92

Query: 61 CSGEGVGSG 69
          C    +G G
Sbjct: 93 CEDGVLGLG 99

BLAST of MC06g1315 vs. ExPASy TrEMBL
Match: A0A1J3DM00 (Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=GA_TR6706_c0_g1_i1_g.22624 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.45e-17
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 1  PKTLALMAVKRQTAASRSARPLIRLQHGVTGGWPMETLTRPPSNLAQTPSLRVFLGHFFP 60
          P+  AL AV+RQ AASRSA PL+R+QHG TGG+P   L+RP S LAQTPSLR  LGH   
Sbjct: 6  PRMFALRAVQRQAAASRSASPLMRVQHGSTGGFPRVMLSRPLSTLAQTPSLRASLGHL-A 65

Query: 61 CSGEGVGSG 69
           +G G+G G
Sbjct: 66 VAGLGLGLG 73

BLAST of MC06g1315 vs. ExPASy TrEMBL
Match: A0A1J3HGC2 (Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=LE_TR2848_c0_g1_i1_g.7826 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.45e-17
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 1  PKTLALMAVKRQTAASRSARPLIRLQHGVTGGWPMETLTRPPSNLAQTPSLRVFLGHFFP 60
          P+  AL AV+RQ AASRSA PL+R+QHG TGG+P   L+RP S LAQTPSLR  LGH   
Sbjct: 6  PRMFALRAVQRQAAASRSASPLMRVQHGSTGGFPRVMLSRPLSTLAQTPSLRASLGHL-A 65

Query: 61 CSGEGVGSG 69
           +G G+G G
Sbjct: 66 VAGLGLGLG 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAF3492506.11.18e-1867.14hypothetical protein DY000_02054766, partial [Brassica cretica][more]
KAF2574527.11.67e-1863.77hypothetical protein F2Q70_00001605 [Brassica cretica][more]
KAF3555844.12.09e-1861.11hypothetical protein F2Q69_00013986 [Brassica cretica][more]
KAG8486674.12.20e-1868.12hypothetical protein CXB51_019983 [Gossypium anomalum][more]
PON92988.14.89e-1865.15hypothetical protein TorRG33x02_112670 [Trema orientale][more]
Match NameE-valueIdentityDescription
A0A2P5F5C42.37e-1865.15Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_112670 PE=4 SV... [more]
A0A5D2BQE99.10e-1863.77Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D08G218000v1 PE=... [more]
A0A5B6W3Q82.99e-1763.77Transmembrane protein OS=Gossypium australe OX=47621 GN=EPI10_025979 PE=4 SV=1[more]
A0A1J3DM003.45e-1760.87Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=GA_TR6706_c0_g1_i1_... [more]
A0A1J3HGC23.45e-1760.87Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=LE_TR2848_c0_g1_i1_... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g1315.1MC06g1315.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane