MC06g1278 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g1278
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	ORF40u
Location	MC06: 19423588 .. 19423753 (-)
RNA-Seq Expression	MC06g1278
Synteny	MC06g1278

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATGGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGA

mRNA sequence

ATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATGGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGA

Coding sequence (CDS)

ATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATGGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGA

Protein sequence

MSRRLIGSGLVKGTHRSRSESESSWGNCHCLWTRTWVIDQDEAWVKLSGGPNR

Homology

[Close]

BLAST of MC06g1278 vs. NCBI nr
Match: YP_001152216.1 (ORF40u [Pinus koraiensis] >AAO74140.2 ORF40u [Pinus koraiensis])

HSP 1 Score: 86.3 bits (212), Expect = 5.94e-21
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MSRRLIGSGLVKGTHRSRSESESSWGNCHCLWTRTWVI 38
          MSRRLIGSGLVKGTHRSRSESESSWGNCHCLWTRTWVI
Sbjct: 1  MSRRLIGSGLVKGTHRSRSESESSWGNCHCLWTRTWVI 38

[Close]

BLAST of MC06g1278 vs. NCBI nr
Match: THU42265.1 (hypothetical protein C4D60_Mb00t14770 [Musa balbisiana])

HSP 1 Score: 48.5 bits (114), Expect = 3.85e-05
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 1   MSRRLIGSGLVKGTHRSRSESESS 24
           MSRRLIGSGLVKGTHRSRSESESS
Sbjct: 112 MSRRLIGSGLVKGTHRSRSESESS 135

[Close]

BLAST of MC06g1278 vs. NCBI nr
Match: KAG4937805.1 (hypothetical protein JHK86_043946 [Glycine max] >KAG5070524.1 hypothetical protein JHK85_002901 [Glycine max] >KAG5107061.1 hypothetical protein JHK82_044031 [Glycine max] >KAG5107068.1 hypothetical protein JHK82_044038 [Glycine max])

HSP 1 Score: 43.9 bits (102), Expect = 9.16e-04
Identity = 24/39 (61.54%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 1  MSRRLIGSGLVKGTHRSRSESE--------SSWGNCHCL 31
          MSRRLIGSGLVKG HRSRSESE        +SW +  C+
Sbjct: 1  MSRRLIGSGLVKGNHRSRSESEGEMPLEPRASWFSPKCV 39

[Close]

BLAST of MC06g1278 vs. ExPASy TrEMBL
Match: Q85WS9 (ORF40u OS=Pinus koraiensis OX=88728 PE=4 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 2.88e-21
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MSRRLIGSGLVKGTHRSRSESESSWGNCHCLWTRTWVI 38
          MSRRLIGSGLVKGTHRSRSESESSWGNCHCLWTRTWVI
Sbjct: 1  MSRRLIGSGLVKGTHRSRSESESSWGNCHCLWTRTWVI 38

[Close]

BLAST of MC06g1278 vs. ExPASy TrEMBL
Match: M0U9B1 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.12e-06
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 1  MSRRLIGSGLVKGTHRSRSESESS 24
          MSRRLIGSGLVKGTHRSRSESESS
Sbjct: 1  MSRRLIGSGLVKGTHRSRSESESS 24

[Close]

BLAST of MC06g1278 vs. ExPASy TrEMBL
Match: A0A4S8I2V0 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t14770 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.86e-05
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 1   MSRRLIGSGLVKGTHRSRSESESS 24
           MSRRLIGSGLVKGTHRSRSESESS
Sbjct: 112 MSRRLIGSGLVKGTHRSRSESESS 135

The following BLAST results are available for this feature:

BLAST of MC06g1278 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g1278 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_001152216.1	5.94e-21	100.00	ORF40u [Pinus koraiensis] >AAO74140.2 ORF40u [Pinus koraiensis]	[more]
THU42265.1	3.85e-05	100.00	hypothetical protein C4D60_Mb00t14770 [Musa balbisiana]	[more]
KAG4937805.1	9.16e-04	61.54	hypothetical protein JHK86_043946 [Glycine max] >KAG5070524.1 hypothetical prote...	[more]

BLAST of MC06g1278 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q85WS9	2.88e-21	100.00	ORF40u OS=Pinus koraiensis OX=88728 PE=4 SV=2	[more]
M0U9B1	2.12e-06	100.00	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1	[more]
A0A4S8I2V0	1.86e-05	100.00	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t14770 PE=4 SV=...	[more]

BLAST of MC06g1278 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g1278.1	MC06g1278.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast