MC06g1274 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g1274
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribulose bisphosphate carboxylase large chain
Location	MC06: 19421864 .. 19422040 (-)
RNA-Seq Expression	MC06g1274
Synteny	MC06g1274

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGTGCAAAGGTTTCCTCGGGCCAGACGGAGATTGGCCCTCGAGTGCAAAAGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGTCGTCGCTCAACAGATAAAAGTTACTCTAGGGATAACAGGC

mRNA sequence

GCGTGCAAAGGTTTCCTCGGGCCAGACGGAGATTGGCCCTCGAGTGCAAAAGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGTCGTCGCTCAACAGATAAAAGTTACTCTAGGGATAACAGGC

Coding sequence (CDS)

GCGTGCAAAGGTTTCCTCGGGCCAGACGGAGATTGGCCCTCGAGTGCAAAAGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGTCGTCGCTCAACAGATAAAAGTTACTCTAGGGATAACAGGC

Protein sequence

ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRVVAQQIKVTLGITG

Homology

[Close]

BLAST of MC06g1274 vs. NCBI nr
Match: RZC44126.1 (hypothetical protein C5167_037083 [Papaver somniferum])

HSP 1 Score: 118 bits (296), Expect = 2.97e-33
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1  ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRVVAQQIKVTLGITG 59
          ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGR VAQ+IKVTLGITG
Sbjct: 20 ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG 78

[Close]

BLAST of MC06g1274 vs. NCBI nr
Match: QCE15173.1 (hypothetical protein DEO72_LG11g2182 [Vigna unguiculata])

HSP 1 Score: 118 bits (296), Expect = 2.64e-32
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRVVAQQIKVTLGITG 59
           ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGR VAQ+IKVTLGITG
Sbjct: 95  ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG 153

[Close]

BLAST of MC06g1274 vs. NCBI nr
Match: KAD7116982.1 (hypothetical protein E3N88_04250 [Mikania micrantha])

HSP 1 Score: 116 bits (290), Expect = 5.50e-32
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1   ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRVVAQQIKVTLGITG 59
           ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKV LSDPTVPSGR VAQ+IKVTLGITG
Sbjct: 48  ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVSLSDPTVPSGRAVAQRIKVTLGITG 106

[Close]

BLAST of MC06g1274 vs. NCBI nr
Match: KAC9651022.1 (hypothetical protein E3N88_45460 [Mikania micrantha])

HSP 1 Score: 118 bits (296), Expect = 7.78e-32
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRVVAQQIKVTLGITG 59
           ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGR VAQ+IKVTLGITG
Sbjct: 134 ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG 192

[Close]

BLAST of MC06g1274 vs. NCBI nr
Match: KAD4981698.1 (hypothetical protein E3N88_18369 [Mikania micrantha])

HSP 1 Score: 118 bits (296), Expect = 8.21e-32
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRVVAQQIKVTLGITG 59
           ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGR VAQ+IKVTLGITG
Sbjct: 136 ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG 194

[Close]

BLAST of MC06g1274 vs. ExPASy TrEMBL
Match: A0A4Y7I7X0 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_037083 PE=4 SV=1)

HSP 1 Score: 118 bits (296), Expect = 1.44e-33
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1  ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRVVAQQIKVTLGITG 59
          ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGR VAQ+IKVTLGITG
Sbjct: 20 ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG 78

[Close]

BLAST of MC06g1274 vs. ExPASy TrEMBL
Match: A0A4D6NMW7 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2182 PE=4 SV=1)

HSP 1 Score: 118 bits (296), Expect = 1.28e-32
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRVVAQQIKVTLGITG 59
           ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGR VAQ+IKVTLGITG
Sbjct: 95  ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG 153

[Close]

BLAST of MC06g1274 vs. ExPASy TrEMBL
Match: A0A5N6PUG6 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_04250 PE=4 SV=1)

HSP 1 Score: 116 bits (290), Expect = 2.66e-32
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1   ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRVVAQQIKVTLGITG 59
           ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKV LSDPTVPSGR VAQ+IKVTLGITG
Sbjct: 48  ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVSLSDPTVPSGRAVAQRIKVTLGITG 106

[Close]

BLAST of MC06g1274 vs. ExPASy TrEMBL
Match: A0A5N6L932 (Ribulose bisphosphate carboxylase large chain OS=Mikania micrantha OX=192012 GN=E3N88_45460 PE=3 SV=1)

HSP 1 Score: 118 bits (296), Expect = 3.77e-32
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRVVAQQIKVTLGITG 59
           ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGR VAQ+IKVTLGITG
Sbjct: 134 ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG 192

[Close]

BLAST of MC06g1274 vs. ExPASy TrEMBL
Match: A0A5N6NM13 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_18369 PE=4 SV=1)

HSP 1 Score: 118 bits (296), Expect = 3.97e-32
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRVVAQQIKVTLGITG 59
           ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGR VAQ+IKVTLGITG
Sbjct: 136 ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG 194

The following BLAST results are available for this feature:

BLAST of MC06g1274 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g1274 vs. NCBI nr


Match Name	E-value	Identity	Description
RZC44126.1	2.97e-33	96.61	hypothetical protein C5167_037083 [Papaver somniferum]	[more]
QCE15173.1	2.64e-32	96.61	hypothetical protein DEO72_LG11g2182 [Vigna unguiculata]	[more]
KAD7116982.1	5.50e-32	94.92	hypothetical protein E3N88_04250 [Mikania micrantha]	[more]
KAC9651022.1	7.78e-32	96.61	hypothetical protein E3N88_45460 [Mikania micrantha]	[more]
KAD4981698.1	8.21e-32	96.61	hypothetical protein E3N88_18369 [Mikania micrantha]	[more]

BLAST of MC06g1274 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y7I7X0	1.44e-33	96.61	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_037083 PE=4 SV=1	[more]
A0A4D6NMW7	1.28e-32	96.61	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2182 PE=4 SV=...	[more]
A0A5N6PUG6	2.66e-32	94.92	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_04250 PE=4 SV=1	[more]
A0A5N6L932	3.77e-32	96.61	Ribulose bisphosphate carboxylase large chain OS=Mikania micrantha OX=192012 GN=...	[more]
A0A5N6NM13	3.97e-32	96.61	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_18369 PE=4 SV=1	[more]

BLAST of MC06g1274 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g1274.1	MC06g1274.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
cellular_component	GO:0031361	integral component of thylakoid membrane
cellular_component	GO:0009536	plastid
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity