MC06g1270 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g1270
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Histone H2A
Location	MC06: 19138166 .. 19138683 (-)
RNA-Seq Expression	MC06g1270
Synteny	MC06g1270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCCGCCGGCGGTTCCACCAAGGGAGGTCGCGGCAAGCCCAAGGCCACCAAGTCCGTTTCCCGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGCAGGATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGTGTCGGCGCCGGAGCTCCCGTCTATTTGTCCGCCGTTCTGGAGTATCTCGCTGCCGAGGTAAGCCGCTGCTGCATGGCTGATTTTACTGGAATTTGCTCTGTTCTCGAGCATTTATAGATGTTTATTTTTCTGTATTTTGTTCTGGTTGAAATTAGGTTCTGGAGCTCGCGGGGAATGCGGCGAGAGACAACAAGAAGAATCGTATTGTACCGAGGCATATTCAGCTCGCTGTGAGGAACGATGAGGAGTTGAGTAAGCTTCTGGGCTCTGTAACCATCGCCAATGGAGGAGTTTTGCCCAACATTCATCAAACTCTCTTGCCTAAAAAGGTGGGGAAAGATAAGGGCGATATTGGATCGGCATCGCAGGAATTC

mRNA sequence

ATGAGTTCCGCCGGCGGTTCCACCAAGGGAGGTCGCGGCAAGCCCAAGGCCACCAAGTCCGTTTCCCGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGCAGGATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGTGTCGGCGCCGGAGCTCCCGTCTATTTGTCCGCCGTTCTGGAGTATCTCGCTGCCGAGGTTCTGGAGCTCGCGGGGAATGCGGCGAGAGACAACAAGAAGAATCGTATTGTACCGAGGCATATTCAGCTCGCTGTGAGGAACGATGAGGAGTTGAGTAAGCTTCTGGGCTCTGTAACCATCGCCAATGGAGGAGTTTTGCCCAACATTCATCAAACTCTCTTGCCTAAAAAGGTGGGGAAAGATAAGGGCGATATTGGATCGGCATCGCAGGAATTC

Coding sequence (CDS)

ATGAGTTCCGCCGGCGGTTCCACCAAGGGAGGTCGCGGCAAGCCCAAGGCCACCAAGTCCGTTTCCCGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGCAGGATCGCCAGGTTCCTCAAGGCCGGAAAGTACGCCGAGCGTGTCGGCGCCGGAGCTCCCGTCTATTTGTCCGCCGTTCTGGAGTATCTCGCTGCCGAGGTTCTGGAGCTCGCGGGGAATGCGGCGAGAGACAACAAGAAGAATCGTATTGTACCGAGGCATATTCAGCTCGCTGTGAGGAACGATGAGGAGTTGAGTAAGCTTCTGGGCTCTGTAACCATCGCCAATGGAGGAGTTTTGCCCAACATTCATCAAACTCTCTTGCCTAAAAAGGTGGGGAAAGATAAGGGCGATATTGGATCGGCATCGCAGGAATTC

Protein sequence

MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

Homology

[Close]

BLAST of MC06g1270 vs. ExPASy Swiss-Prot
Match: Q9S9K7 (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.1e-65
Identity = 134/142 (94.37%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MSSAGGS--TKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MSS  GS  TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120
           AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 121 QTLLPKKVGKDKGDIGSASQEF 141
           QTLLP KVGK+KGDIGSASQEF
Sbjct: 121 QTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of MC06g1270 vs. ExPASy Swiss-Prot
Match: O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 7.9e-65
Identity = 129/138 (93.48%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 3   SAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 62
           +  G+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 63  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 122
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 123 PKKVGKDKGDIGSASQEF 141
           P KVGK+KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of MC06g1270 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.0e-64
Identity = 129/138 (93.48%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 3   SAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 62
           S+  +TKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 2   SSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61

Query: 63  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 122
           YLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL
Sbjct: 62  YLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 121

Query: 123 PKKVGKDKGDIGSASQEF 141
           PKKVGK KG+IGSASQEF
Sbjct: 122 PKKVGKGKGEIGSASQEF 139

[Close]

BLAST of MC06g1270 vs. ExPASy Swiss-Prot
Match: P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.7e-63
Identity = 128/140 (91.43%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS+G   KGGRGK K+TKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AV
Sbjct: 1   MSSSG--AKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ 
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQV 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKK GKDKG+IGSASQEF
Sbjct: 121 LLPKKSGKDKGEIGSASQEF 138

[Close]

BLAST of MC06g1270 vs. ExPASy Swiss-Prot
Match: A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-61
Identity = 127/140 (90.71%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSAGG   GGRGK K +KSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSAGGG--GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKK GKDK DIGSASQEF
Sbjct: 121 LLPKKGGKDKADIGSASQEF 138

[Close]

BLAST of MC06g1270 vs. NCBI nr
Match: XP_022154594.1 (probable histone H2AXb [Momordica charantia])

HSP 1 Score: 268 bits (686), Expect = 1.95e-90
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 140
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of MC06g1270 vs. NCBI nr
Match: XP_004135645.1 (histone H2AX [Cucumis sativus] >XP_008450716.1 PREDICTED: histone H2AX [Cucumis melo])

HSP 1 Score: 267 bits (682), Expect = 7.97e-90
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS GGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 140
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of MC06g1270 vs. NCBI nr
Match: TYK10200.1 (histone H2AX [Cucumis melo var. makuwa])

HSP 1 Score: 267 bits (682), Expect = 1.20e-89
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS GGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 140
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of MC06g1270 vs. NCBI nr
Match: XP_038878621.1 (histone H2AX [Benincasa hispida])

HSP 1 Score: 265 bits (676), Expect = 6.55e-89
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS G STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGSSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 140
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of MC06g1270 vs. NCBI nr
Match: KAE8653389.1 (hypothetical protein Csa_007458 [Cucumis sativus])

HSP 1 Score: 267 bits (682), Expect = 8.30e-89
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS GGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 70  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 129

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 130 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 189

Query: 121 LLPKKVGKDKGDIGSASQEF 140
           LLPKKVGKDKGDIGSASQEF
Sbjct: 190 LLPKKVGKDKGDIGSASQEF 209

[Close]

BLAST of MC06g1270 vs. ExPASy TrEMBL
Match: A0A6J1DMK8 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111021819 PE=3 SV=1)

HSP 1 Score: 268 bits (686), Expect = 9.47e-91
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 140
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of MC06g1270 vs. ExPASy TrEMBL
Match: A0A0A0LW51 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G572950 PE=3 SV=1)

HSP 1 Score: 267 bits (682), Expect = 3.86e-90
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS GGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 140
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of MC06g1270 vs. ExPASy TrEMBL
Match: A0A1S3BQI1 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492212 PE=3 SV=1)

HSP 1 Score: 267 bits (682), Expect = 3.86e-90
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS GGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 140
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of MC06g1270 vs. ExPASy TrEMBL
Match: A0A5D3CFR7 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003450 PE=3 SV=1)

HSP 1 Score: 267 bits (682), Expect = 5.79e-90
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS GGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 140
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of MC06g1270 vs. ExPASy TrEMBL
Match: V4TA53 (Histone H2A OS=Citrus clementina OX=85681 GN=CICLE_v10002804mg PE=3 SV=1)

HSP 1 Score: 263 bits (671), Expect = 1.84e-88
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS GGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 140
           LLPKKVGK KGDIGSASQEF
Sbjct: 121 LLPKKVGKGKGDIGSASQEF 140

[Close]

BLAST of MC06g1270 vs. TAIR 10
Match: AT1G54690.1 (gamma histone variant H2AX )

HSP 1 Score: 249.6 bits (636), Expect = 1.5e-66
Identity = 134/142 (94.37%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MSSAGGS--TKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MSS  GS  TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120
           AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 121 QTLLPKKVGKDKGDIGSASQEF 141
           QTLLP KVGK+KGDIGSASQEF
Sbjct: 121 QTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of MC06g1270 vs. TAIR 10
Match: AT1G08880.1 (Histone superfamily protein )

HSP 1 Score: 247.7 bits (631), Expect = 5.6e-66
Identity = 129/138 (93.48%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 3   SAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 62
           +  G+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 63  YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 122
           YLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL
Sbjct: 65  YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

Query: 123 PKKVGKDKGDIGSASQEF 141
           P KVGK+KGDIGSASQEF
Sbjct: 125 PSKVGKNKGDIGSASQEF 142

[Close]

BLAST of MC06g1270 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 198.4 bits (503), Expect = 3.9e-51
Identity = 106/124 (85.48%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 11  GRGKP----KATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 70
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 130
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of MC06g1270 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 198.4 bits (503), Expect = 3.9e-51
Identity = 106/124 (85.48%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 11  GRGKP----KATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 70
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 130
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

[Close]

BLAST of MC06g1270 vs. TAIR 10
Match: AT5G54640.1 (Histone superfamily protein )

HSP 1 Score: 196.4 bits (498), Expect = 1.5e-50
Identity = 106/125 (84.80%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 6   GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 65
           G T G  G  KAT   SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLA
Sbjct: 5   GKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLA 64

Query: 66  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 125
           AEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK
Sbjct: 65  AEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK 124

Query: 126 VGKDK 131
            G  K
Sbjct: 125 AGASK 126

The following BLAST results are available for this feature:

BLAST of MC06g1270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S9K7	2.1e-65	94.37	Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1	[more]
O04848	7.9e-65	93.48	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
O65759	3.0e-64	93.48	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
P35063	5.7e-63	91.43	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
A2ZL69	1.4e-61	90.71	Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3...	[more]

BLAST of MC06g1270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154594.1	1.95e-90	100.00	probable histone H2AXb [Momordica charantia]	[more]
XP_004135645.1	7.97e-90	99.29	histone H2AX [Cucumis sativus] >XP_008450716.1 PREDICTED: histone H2AX [Cucumis ...	[more]
TYK10200.1	1.20e-89	99.29	histone H2AX [Cucumis melo var. makuwa]	[more]
XP_038878621.1	6.55e-89	98.57	histone H2AX [Benincasa hispida]	[more]
KAE8653389.1	8.30e-89	99.29	hypothetical protein Csa_007458 [Cucumis sativus]	[more]

BLAST of MC06g1270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMK8	9.47e-91	100.00	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111021819 PE=3 SV=1	[more]
A0A0A0LW51	3.86e-90	99.29	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G572950 PE=3 SV=1	[more]
A0A1S3BQI1	3.86e-90	99.29	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492212 PE=3 SV=1	[more]
A0A5D3CFR7	5.79e-90	99.29	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003450 PE...	[more]
V4TA53	1.84e-88	97.86	Histone H2A OS=Citrus clementina OX=85681 GN=CICLE_v10002804mg PE=3 SV=1	[more]

BLAST of MC06g1270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54690.1	1.5e-66	94.37	gamma histone variant H2AX	[more]
AT1G08880.1	5.6e-66	93.48	Histone superfamily protein	[more]
AT4G27230.1	3.9e-51	85.48	histone H2A 2	[more]
AT4G27230.2	3.9e-51	85.48	histone H2A 2	[more]
AT5G54640.1	1.5e-50	84.80	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 48..63 score: 84.58 coord: 77..91 score: 75.49 coord: 63..76 score: 89.46 coord: 19..41 score: 69.77 coord: 105..123 score: 70.23
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 8..128 e-value: 1.0E-76 score: 270.9
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 13..125 e-value: 4.83364E-67 score: 196.787
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 15..94 e-value: 1.7E-14 score: 54.3
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 97..130 e-value: 2.7E-18 score: 65.4
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 6..133 e-value: 5.2E-63 score: 212.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 22..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR23430:SF322	HISTONE H2A	coord: 5..138
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 5..138
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 27..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g1270.1	MC06g1270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity