MC06g1218 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g1218
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	PMD domain-containing protein
Location	MC06: 16639477 .. 16639680 (+)
RNA-Seq Expression	MC06g1218
Synteny	MC06g1218

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACTGAAGATCCATGTGGAATTCTATTATATTGATTATTATTGGGACTGGTTAGAGGTTGTGGTTGCTAGTTGTAAGAAAACTCTTTGTGATGCTCATATATTTGATGCAATAATGGCTTCTCAATATACGTATGACCATAACAACGATGTGGTGCGAGCTTTTTGCGAGGCTTGGTGTCGTTCAACACGCACTCTACATTCT

mRNA sequence

ATACTGAAGATCCATGTGGAATTCTATTATATTGATTATTATTGGGACTGGTTAGAGGTTGTGGTTGCTAGTTGTAAGAAAACTCTTTGTGATGCTCATATATTTGATGCAATAATGGCTTCTCAATATACGTATGACCATAACAACGATGTGGTGCGAGCTTTTTGCGAGGCTTGGTGTCGTTCAACACGCACTCTACATTCT

Coding sequence (CDS)

ATACTGAAGATCCATGTGGAATTCTATTATATTGATTATTATTGGGACTGGTTAGAGGTTGTGGTTGCTAGTTGTAAGAAAACTCTTTGTGATGCTCATATATTTGATGCAATAATGGCTTCTCAATATACGTATGACCATAACAACGATGTGGTGCGAGCTTTTTGCGAGGCTTGGTGTCGTTCAACACGCACTCTACATTCT

Protein sequence

ILKIHVEFYYIDYYWDWLEVVVASCKKTLCDAHIFDAIMASQYTYDHNNDVVRAFCEAWCRSTRTLHS

Homology

[Close]

BLAST of MC06g1218 vs. NCBI nr
Match: KAA0025723.1 (uncharacterized protein E6C27_scaffold653G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 6.93e-23
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 1  ILKIHVEFYYIDYYWDWLEVVVASCKKTLCDAHIFDAIMASQYTYDHNNDVVRAFCEAWC 60
          +LK+H EFYY+ +YW+WLE+VVA     L  A +FD +MA  YTYD N+D VRAFCEAWC
Sbjct: 12 VLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNSDTVRAFCEAWC 71

Query: 61 RSTRTLHS 68
           ST TLH+
Sbjct: 72 PSTNTLHT 79

[Close]

BLAST of MC06g1218 vs. NCBI nr
Match: TYJ95665.1 (hypothetical protein E5676_scaffold104G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 9.03e-23
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1   ILKIHVEFYYIDYYWDWLEVVVASCKKTLCDAHIFDAIMASQYTYDHNNDVVRAFCEAWC 60
           +LK+H EFYY+ ++W+WLE+ VA     L  A +FD +MAS YTYD N+D+VRAFCEAWC
Sbjct: 106 VLKVHGEFYYLSHHWEWLELAVARNMTILKRARLFDVVMASMYTYDRNSDIVRAFCEAWC 165

Query: 61  RSTRTLHS 68
            ST TLH+
Sbjct: 166 PSTNTLHT 173

[Close]

BLAST of MC06g1218 vs. NCBI nr
Match: TYK06154.1 (uncharacterized protein E5676_scaffold287G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 9.80e-23
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 1  ILKIHVEFYYIDYYWDWLEVVVASCKKTLCDAHIFDAIMASQYTYDHNNDVVRAFCEAWC 60
          +LK+H EFYY+ +YW+WLE+VVA     L  A +FD +MA  YTYD N+D VRAFCEAWC
Sbjct: 12 VLKVHGEFYYLSHYWEWLELVVARNTAILKKARLFDVVMAFLYTYDRNSDTVRAFCEAWC 71

Query: 61 RSTRTLHS 68
           ST TLH+
Sbjct: 72 PSTNTLHT 79

[Close]

BLAST of MC06g1218 vs. NCBI nr
Match: KAA0033523.1 (hypothetical protein E6C27_scaffold261G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 7.60e-22
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1   ILKIHVEFYYIDYYWDWLEVVVASCKKTLCDAHIFDAIMASQYTYDHNNDVVRAFCEAWC 60
           +LK+H EFYY+ ++W+WLE+ VA     L  A +FD +MAS YTYD N+D+VRAFCEAWC
Sbjct: 215 VLKVHGEFYYLSHHWEWLELAVARNMTILKRARLFDVVMASMYTYDRNSDIVRAFCEAWC 274

Query: 61  RSTRTLHS 68
            ST TLH+
Sbjct: 275 PSTNTLHT 282

[Close]

BLAST of MC06g1218 vs. NCBI nr
Match: KAA0033822.1 (uncharacterized protein E6C27_scaffold1735G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.84e-21
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 1   ILKIHVEFYYIDYYWDWLEVVVASCKKTLCDAHIFDAIMASQYTYDHNNDVVRAFCEAWC 60
           +LK+H EFYY+ +YW+WLE+ VA     L  AH+FDA+MAS YTYD N+D+VRAF +AWC
Sbjct: 106 VLKVHGEFYYLSHYWEWLELAVARNTAILKRAHLFDAVMASMYTYDRNSDIVRAFYKAWC 165

Query: 61  RSTRTLHS 68
            ST TLH+
Sbjct: 166 SSTNTLHT 173

[Close]

BLAST of MC06g1218 vs. ExPASy TrEMBL
Match: A0A5A7SM27 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00020 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.36e-23
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 1  ILKIHVEFYYIDYYWDWLEVVVASCKKTLCDAHIFDAIMASQYTYDHNNDVVRAFCEAWC 60
          +LK+H EFYY+ +YW+WLE+VVA     L  A +FD +MA  YTYD N+D VRAFCEAWC
Sbjct: 12 VLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNSDTVRAFCEAWC 71

Query: 61 RSTRTLHS 68
           ST TLH+
Sbjct: 72 PSTNTLHT 79

[Close]

BLAST of MC06g1218 vs. ExPASy TrEMBL
Match: A0A5D3BB02 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00970 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.37e-23
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1   ILKIHVEFYYIDYYWDWLEVVVASCKKTLCDAHIFDAIMASQYTYDHNNDVVRAFCEAWC 60
           +LK+H EFYY+ ++W+WLE+ VA     L  A +FD +MAS YTYD N+D+VRAFCEAWC
Sbjct: 106 VLKVHGEFYYLSHHWEWLELAVARNMTILKRARLFDVVMASMYTYDRNSDIVRAFCEAWC 165

Query: 61  RSTRTLHS 68
            ST TLH+
Sbjct: 166 PSTNTLHT 173

[Close]

BLAST of MC06g1218 vs. ExPASy TrEMBL
Match: A0A5D3C4B8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00020 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.75e-23
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 1  ILKIHVEFYYIDYYWDWLEVVVASCKKTLCDAHIFDAIMASQYTYDHNNDVVRAFCEAWC 60
          +LK+H EFYY+ +YW+WLE+VVA     L  A +FD +MA  YTYD N+D VRAFCEAWC
Sbjct: 12 VLKVHGEFYYLSHYWEWLELVVARNTAILKKARLFDVVMAFLYTYDRNSDTVRAFCEAWC 71

Query: 61 RSTRTLHS 68
           ST TLH+
Sbjct: 72 PSTNTLHT 79

[Close]

BLAST of MC06g1218 vs. ExPASy TrEMBL
Match: A0A5A7SST7 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00660 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.68e-22
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1   ILKIHVEFYYIDYYWDWLEVVVASCKKTLCDAHIFDAIMASQYTYDHNNDVVRAFCEAWC 60
           +LK+H EFYY+ ++W+WLE+ VA     L  A +FD +MAS YTYD N+D+VRAFCEAWC
Sbjct: 215 VLKVHGEFYYLSHHWEWLELAVARNMTILKRARLFDVVMASMYTYDRNSDIVRAFCEAWC 274

Query: 61  RSTRTLHS 68
            ST TLH+
Sbjct: 275 PSTNTLHT 282

[Close]

BLAST of MC06g1218 vs. ExPASy TrEMBL
Match: A0A5A7SRI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1735G00180 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.90e-22
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 1   ILKIHVEFYYIDYYWDWLEVVVASCKKTLCDAHIFDAIMASQYTYDHNNDVVRAFCEAWC 60
           +LK+H EFYY+ +YW+WLE+ VA     L  AH+FDA+MAS YTYD N+D+VRAF +AWC
Sbjct: 106 VLKVHGEFYYLSHYWEWLELAVARNTAILKRAHLFDAVMASMYTYDRNSDIVRAFYKAWC 165

Query: 61  RSTRTLHS 68
            ST TLH+
Sbjct: 166 SSTNTLHT 173

The following BLAST results are available for this feature:

BLAST of MC06g1218 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g1218 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025723.1	6.93e-23	60.29	uncharacterized protein E6C27_scaffold653G00020 [Cucumis melo var. makuwa]	[more]
TYJ95665.1	9.03e-23	58.82	hypothetical protein E5676_scaffold104G00970 [Cucumis melo var. makuwa]	[more]
TYK06154.1	9.80e-23	60.29	uncharacterized protein E5676_scaffold287G00020 [Cucumis melo var. makuwa]	[more]
KAA0033523.1	7.60e-22	58.82	hypothetical protein E6C27_scaffold261G00660 [Cucumis melo var. makuwa]	[more]
KAA0033822.1	1.84e-21	60.29	uncharacterized protein E6C27_scaffold1735G00180 [Cucumis melo var. makuwa]	[more]

BLAST of MC06g1218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SM27	3.36e-23	60.29	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3BB02	4.37e-23	58.82	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3C4B8	4.75e-23	60.29	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SST7	3.68e-22	58.82	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7SRI5	8.90e-22	60.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MC06g1218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 5..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g1218.1	MC06g1218.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane