MC06g1196 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g1196
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	ATP synthase subunit alpha
Location	MC06: 15456337 .. 15456474 (+)
RNA-Seq Expression	MC06g1196
Synteny	MC06g1196

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTAGAAATTCGAATTACCAACTTTTACACGAATTTTAAAGTGGATGAGATTGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACATGTTTATGGATTGAAGGCGATTCAAGCTTGGGAAATGGTGGAATTTGCT

mRNA sequence

TTATTAGAAATTCGAATTACCAACTTTTACACGAATTTTAAAGTGGATGAGATTGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACATGTTTATGGATTGAAGGCGATTCAAGCTTGGGAAATGGTGGAATTTGCT

Coding sequence (CDS)

TTATTAGAAATTCGAATTACCAACTTTTACACGAATTTTAAAGTGGATGAGATTGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACATGTTTATGGATTGAAGGCGATTCAAGCTTGGGAAATGGTGGAATTTGCT

Protein sequence

LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA

Homology

[Close]

BLAST of MC06g1196 vs. ExPASy Swiss-Prot
Match: Q06735 (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.2e-15
Identity = 40/46 (86.96%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 47
          LLE RITNFYTNF+VDEIGRVVSVGDGIA VYGL  IQA EMVEFA
Sbjct: 13 LLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFA 58

[Close]

BLAST of MC06g1196 vs. ExPASy Swiss-Prot
Match: Q01915 (ATP synthase subunit alpha, mitochondrial OS=Glycine max OX=3847 GN=ATPA PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.2e-15
Identity = 40/46 (86.96%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 47
          LLE RITNFYTNF+VDEIGRVVSVGDGIA VYGL  IQA EMVEFA
Sbjct: 13 LLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFA 58

[Close]

BLAST of MC06g1196 vs. ExPASy Swiss-Prot
Match: P05492 (ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 9.4e-15
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 47
          LLE RITNFYTNF+VDEIGRV+SVGDGIA VYGL  IQA EMVEFA
Sbjct: 13 LLESRITNFYTNFQVDEIGRVISVGDGIARVYGLNEIQAGEMVEFA 58

[Close]

BLAST of MC06g1196 vs. ExPASy Swiss-Prot
Match: P0C520 (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa OX=4530 GN=ATPA PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-14
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 47
          LLE R+TNFYTNF+VDEIGRVVSVGDGIA VYGL  IQA EMVEFA
Sbjct: 13 LLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFA 58

[Close]

BLAST of MC06g1196 vs. ExPASy Swiss-Prot
Match: P0C521 (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=ATPA PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-14
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 47
          LLE R+TNFYTNF+VDEIGRVVSVGDGIA VYGL  IQA EMVEFA
Sbjct: 13 LLESRMTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFA 58

[Close]

BLAST of MC06g1196 vs. NCBI nr
Match: PPR86452.1 (hypothetical protein GOBAR_AA34236 [Gossypium barbadense])

HSP 1 Score: 82.4 bits (202), Expect = 6.72e-19
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 46
          LLE RITNFYTNFKVDEIGRVVSVGDGIA VYGL  IQA EMVEFA
Sbjct: 17 LLESRITNFYTNFKVDEIGRVVSVGDGIARVYGLNKIQAGEMVEFA 62

[Close]

BLAST of MC06g1196 vs. NCBI nr
Match: TYH25400.1 (hypothetical protein ES288_A03G165500v1 [Gossypium darwinii])

HSP 1 Score: 82.4 bits (202), Expect = 7.09e-19
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 46
          LLE RITNFYTNFKVDEIGRVVSVGDGIA VYGL  IQA EMVEFA
Sbjct: 17 LLESRITNFYTNFKVDEIGRVVSVGDGIARVYGLNKIQAGEMVEFA 62

[Close]

BLAST of MC06g1196 vs. NCBI nr
Match: QHO38485.1 (ATP synthase subunit alpha [Arachis hypogaea])

HSP 1 Score: 82.8 bits (203), Expect = 1.35e-18
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 46
          LLE RITNFYTNF+VDEIGRVVSVGDGIA VYGLK IQA EMVEFA
Sbjct: 20 LLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLKEIQAGEMVEFA 65

[Close]

BLAST of MC06g1196 vs. NCBI nr
Match: KCW45798.1 (hypothetical protein EUGRSUZ_L00375 [Eucalyptus grandis])

HSP 1 Score: 80.9 bits (198), Expect = 5.00e-18
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1   LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 46
           LLE RITNFYTNFKVDEIG+V+SVGDGIA VYGLK IQ  EMVEFA
Sbjct: 72  LLESRITNFYTNFKVDEIGQVISVGDGIARVYGLKEIQVGEMVEFA 117

[Close]

BLAST of MC06g1196 vs. NCBI nr
Match: KAE9605142.1 (ATP synthase subunit alpha [Lupinus albus] >KAF1889126.1 hypothetical protein Lal_00035314 [Lupinus albus])

HSP 1 Score: 80.1 bits (196), Expect = 5.08e-18
Identity = 40/46 (86.96%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 46
          LLE RITNFYTN KVDEIGRVVSVGDGIA VYGL  IQA EMVEFA
Sbjct: 13 LLESRITNFYTNLKVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFA 58

[Close]

BLAST of MC06g1196 vs. ExPASy TrEMBL
Match: A0A2P5W5S6 (ATP-synt_ab_N domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA34236 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.25e-19
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 46
          LLE RITNFYTNFKVDEIGRVVSVGDGIA VYGL  IQA EMVEFA
Sbjct: 17 LLESRITNFYTNFKVDEIGRVVSVGDGIARVYGLNKIQAGEMVEFA 62

[Close]

BLAST of MC06g1196 vs. ExPASy TrEMBL
Match: A0A5D2H660 (ATP-synt_ab_N domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_A03G165500v1 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.43e-19
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 46
          LLE RITNFYTNFKVDEIGRVVSVGDGIA VYGL  IQA EMVEFA
Sbjct: 17 LLESRITNFYTNFKVDEIGRVVSVGDGIARVYGLNKIQAGEMVEFA 62

[Close]

BLAST of MC06g1196 vs. ExPASy TrEMBL
Match: A0A803MJA2 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.01e-18
Identity = 40/46 (86.96%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 46
          LLE RITNFYTNF+VDEIGRVVSVGDGIA VYGL  IQA EMVEFA
Sbjct: 13 LLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFA 58

[Close]

BLAST of MC06g1196 vs. ExPASy TrEMBL
Match: A0A803NCT7 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.36e-18
Identity = 40/46 (86.96%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 46
          LLE RITNFYTNF+VDEIGRVVSVGDGIA VYGL  IQA EMVEFA
Sbjct: 13 LLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFA 58

[Close]

BLAST of MC06g1196 vs. ExPASy TrEMBL
Match: A0A058ZVF9 (ATP-synt_ab_N domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_L00375 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.42e-18
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1   LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 46
           LLE RITNFYTNFKVDEIG+V+SVGDGIA VYGLK IQ  EMVEFA
Sbjct: 72  LLESRITNFYTNFKVDEIGQVISVGDGIARVYGLKEIQVGEMVEFA 117

[Close]

BLAST of MC06g1196 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 71.2 bits (173), Expect = 2.4e-13
Identity = 36/46 (78.26%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 1   LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 47
           L E RI NFY NF+VDEIGRVVSVGDGIA VYGL  IQA EMV FA
Sbjct: 283 LFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFA 328

[Close]

BLAST of MC06g1196 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 71.2 bits (173), Expect = 2.4e-13
Identity = 36/46 (78.26%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 1  LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEFA 47
          L E RI NFY NF+VDEIGRVVSVGDGIA VYGL  IQA EMV FA
Sbjct: 13 LFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFA 58

[Close]

BLAST of MC06g1196 vs. TAIR 10
Match: ATCG00120.1 (ATP synthase subunit alpha )

HSP 1 Score: 40.4 bits (93), Expect = 4.5e-04
Identity = 18/45 (40.00%), Postives = 26/45 (57.78%), Query Frame = 0


Query: 1  LLEIRITNFYTNFKVDEIGRVVSVGDGIAHVYGLKAIQAWEMVEF 46
          ++  RI  +     +   G V+ VGDGIA +YGL  + A E+VEF
Sbjct: 12 IIRERIEQYNREVTIVNTGTVLQVGDGIARIYGLDEVMAGELVEF 56

The following BLAST results are available for this feature:

BLAST of MC06g1196 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q06735	7.2e-15	86.96	ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=...	[more]
Q01915	7.2e-15	86.96	ATP synthase subunit alpha, mitochondrial OS=Glycine max OX=3847 GN=ATPA PE=3 SV...	[more]
P05492	9.4e-15	84.78	ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA P...	[more]
P0C520	1.6e-14	84.78	ATP synthase subunit alpha, mitochondrial OS=Oryza sativa OX=4530 GN=ATPA PE=3 S...	[more]
P0C521	1.6e-14	84.78	ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica OX=39946...	[more]

BLAST of MC06g1196 vs. NCBI nr


Match Name	E-value	Identity	Description
PPR86452.1	6.72e-19	89.13	hypothetical protein GOBAR_AA34236 [Gossypium barbadense]	[more]
TYH25400.1	7.09e-19	89.13	hypothetical protein ES288_A03G165500v1 [Gossypium darwinii]	[more]
QHO38485.1	1.35e-18	89.13	ATP synthase subunit alpha [Arachis hypogaea]	[more]
KCW45798.1	5.00e-18	84.78	hypothetical protein EUGRSUZ_L00375 [Eucalyptus grandis]	[more]
KAE9605142.1	5.08e-18	86.96	ATP synthase subunit alpha [Lupinus albus] >KAF1889126.1 hypothetical protein La...	[more]

BLAST of MC06g1196 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5W5S6	3.25e-19	89.13	ATP-synt_ab_N domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR...	[more]
A0A5D2H660	3.43e-19	89.13	ATP-synt_ab_N domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_...	[more]
A0A803MJA2	1.01e-18	86.96	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A803NCT7	2.36e-18	86.96	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A058ZVF9	2.42e-18	84.78	ATP-synt_ab_N domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSU...	[more]

BLAST of MC06g1196 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07698.1	2.4e-13	78.26	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	2.4e-13	78.26	ATP synthase subunit 1	[more]
ATCG00120.1	4.5e-04	40.00	ATP synthase subunit alpha	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	PFAM	PF02874	ATP-synt_ab_N	coord: 15..45 e-value: 1.5E-4 score: 22.2
IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	GENE3D	2.40.30.20		coord: 1..46 e-value: 9.4E-14 score: 52.9
None	No IPR available	PANTHER	PTHR48082:SF2	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	coord: 2..46
None	No IPR available	PANTHER	PTHR48082	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	coord: 2..46
IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	SUPERFAMILY	50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 2..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g1196.1	MC06g1196.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism