MC06g1050 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g1050
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	serine/arginine-rich SC35-like splicing factor SCL30A
Location	MC06: 10189016 .. 10192982 (+)
RNA-Seq Expression	MC06g1050
Synteny	MC06g1050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCAGTTCTACGTAAAAGAGAAAAAAAAAGAAAGAAAAAAACTGCAGCTTAAACGACGTCGTTACATTCCGCGCCCTTTTATTTCATAATATTATTTATCTACAGCGAAATACTGATGCCCTAAACTTGCAAATCTGAAGCACCGCCGTCTGTTTCTCCATCGAATTTCATCTTTGAGCCCTAATTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCCGCCGATTGGATTCACATTCGCACACCACTTTCAAATCTCGGTCAAGCATATTTGTATAATTACTGCGCTTCTTGTTCTGATCTGTTCCCGCTTCAACATTTTCAGGTAATTTCCCCAAATTTAACTTGTAATTCTGTACGCCATGCCATGTTCGGTTGATCGAGTCGAGGTTTTTGTTATGGTGGCCGTGTACTTCGTCTAATTCAGCTGCCTTGAGAACTTGTCATATGGTTAACTCTTGTTTACTTGTGCACAGCTACAGCGAGATTCTTGGACATTTGTTACTGTACAAATTATGAGGGGTAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGGAGAAGGGGACGGAGCCCTAGCCCTAGGGGGCGCTATGGTGGACGTGGAAGGGACAGGGACCTTCCCACTAGCCTTCTAGTTCGTAATCTTCGCCATGACTGCAGGTTTGTTTTTGTCGAGTTTGTTGGTATATAGTTATGCTTTCGTTTTTGTTTCTTTTTGCCCTCGATTTTCTTTCTGCTTAGTAGGATCAATTTTCTTCCTCTAGAAAGTCTGGAAGAGGAATATGGATCATTTCATTTTAGTTTGATAGGAGATAGATCTGTGTATTAGAGAAAACAATCATGTACAGAAGGGGGGAATAATGAATCGCATTGTCCAAAGAGCTAAGGGAGTTAAAAAAGGATTTCTCTCTAAAGTGTTGAGAAATTAGAACAGTGATGAATATTCCTATTTCAAAGGGTTCTGAAAGAGAATGTGTAGTCTATTTCTTTGTAGCCTACAATGTGCCCTCAAGGCCGCTCACTTCACTTTTGAGGCAAGGAACGCACCCTCCCTAAGGCTATTTTATTTGAATTTTTCTGTTCCGCACTTTGCAAAATAGTTTTTTCCCCCATACTTAGCAGTGTTAGCCGTGGAAAGTTGTTACGCCTAAGCATGCCTCTCGCCCTCTGAAAAACACTTTTCTGGCCCCCAATACAGTGTGTATATTCCACCACATTGGGTTGGCTTATTTCCTAAGATAAAATTCGAATTATAGAAATTCAGTAGACTTTCTTTCATTTTTCACCTCCCTTGCAGGGCATCAATTCTGACCTGCATCCATGAAATGGTAGGAGTTGTTGGTGTCTGAATATTAAAGAATTTAATACAGTGATATGTTCTGTTCTGATTTGCAAGTTGCTTTGTCTCTGTGTGATTTGCAATTAGGAATAAATTTCTGTATCTACTCTACTGGTATTTTTCTTTACTGCATACTGTTTTTTTTTAGGAAACACATTTACTGCATATTGTTATATTTCCTAGCCTGCTGATCAATTATATTCCAAGTGTTTATTAATCAATTCTCAGTAAGAAGGTGATGAAACCTGGTCTACCACTTATTTATTTCTTTTGATACAGGCCCGAGGATCTTCGTAGACAATTTGGACAGTTTGGTGCTATTAAGGACATATACCTTCCGAAGGATTATTATACTGGGTGAGCATGTCTGAGCTGTATGTTGGATTTGCGGATTCTTTGGTGCTAGTGTTAGTTTTTTTATTAGCAAGATGCAATTTTATTGTTTGCGCATACGGTTTTTGAAGTAACTGTTTAAACCTTACCCTATGTTTTTAGTTTCTGATAAATGTTTGATATACTGTGTTTTTCTATGTTGCATTTGCAAATTTGTTTACAAATAGTGGTTTCAGGAAAATTGTGATTTCAATAATTTCCTTGCTTCTTTTGTGTTTCTAGCACAATCCTTGGGATAAGTTATTTATGAATTTTGTGAAGCAGGTCGTACTTAGTGTCCATCTTTCATATTATGCATATTATGGTGGGGAGGCATTTTCTTTCTGGTCCTTTTTTCTCCTTATCCCATATTAGGTTTGTTTATTGAATGTTTGAAGATTTAACAGTGAAACTAATGTTTTGAAGAAGACATCAAGTAATTAGAGTTCTATTGAAGATGATGTTAATGGTAGTGAAGATTGGAAGGAAGTTGGATTCTAATACATAGAAGATGTTCCAAGTCTTGAAGAATTTCAAGTCATCTTAAATCTGACACATGCAAGGTCAGCAGCCAAGTGCTTGCTTTATTATCACAGACCTTCCATATTGCAAGGGATATGATGGGCAGTTTTATTAGAGAAGGTTTATGGCAGGCTAAGTACCTGACCTGATTCTTAGTGACTTTACATTTACCTTTTTTTAATAACTTTTTTCCTTTTCCTTTTCTTGGTACAACAATTTTGCAGAGAACCACGTGGTTTCGGTTTTGTTCAATATGTAGATCCTGCCGATGCTGCTGATGCTAAACACCAGATGGATGGCTGTGTTCTTCTTGGTAGGGAGTTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAACCATCTGATATGAGGGCAAGGGAGAGAGGAAGGTATAAAGTTGCTGCCTATTATTTTTGCTATTCTTAGTAGACATGGTTTTTATAATCAACTGTCAGTTAATGTAATGCATTTGCCTTTGCATGCATTTTCGAGCATGATGCATATAGGAGTTTGGGATGGTTTTTGAAAAAAGTGCTTTTTAAGTGAAAGTACTTCTAGAAGTACTAATTAAGTATTTCTCTCAACTGCTTAAGTATTATTTACCAACCTTGATATTATTTACCTTTCTAAAGGTCAGTAGTTCAAAACTTCACCCTTGTTTTTTTTTTTTTTTTAATCTAAAAACATGTTTCTTCCAGCGTAGGTGTTTTTTTAGTATTTTTAAAAATTTCATAATCACTTAATTTTATTGTCCAGTCAAACACTATGAAACTTGCTTTTGATGGTCTAAAAGAACTTTTTACCCTTTTAAGAGACATCCCAAACTCAAATTTAGTATTGCATCTCTTAAACGAAATTAATATTTCAGTCGCACAAACAGTGGACGATTTCATGATCGAAGAAGGTCTCCTCCACGATATTCTCGTTCGCCTCGTTACTCTCGTTCCCCGGCTCCACGCCATGCAAGGTATTCTCGTTCACCAGCTCCACGCCATGCAAGGTCTAGGTCCCGTAGTTATGATTACACTTCCCCACCACCAAAACAAAGGGCATGCTCTAGGTATTCTTTCAATCTATTGACTATTTGATCCGTAATTCTAGACTTAGTACTTGATGTCTTTGATTCCCTAGGTGAACTGTTTTTTGAGCTACAAGTCTTTCTATATGTTGGATGCAGGTCGGTGTCCCCCCGTGACAGACGGGACAGTCGAGAGAGGTCATACCCTCGGCAGCCTAGCCGAGGTAGGTCATACTCCCAGTCTCCACGTCTCAATGGTTCAAGAAGTAGAAGCCAGAGTCCAGCGAGGGGCGGTAGCCGAAGTCAGAGTCCAGCGAGAGGCCGAAGTCGGAGCAGAAGTGTCAGCCGGAGCAGAAGTCCACGACGAAGTCCGAGGCATGAAGAAGAGTACAGAAGTGATCCAAATGGAGATAGGAGCCCTAGTCAGTAACCAACCCGCTAGAAACTTGGAAAGAAACAACTACAATGTACTATTGCCCCGCTTTAGGCTTCTCTCCCTTTGTATTGTTGAGTAGTGTCTGTTTGATGTTCTTAGGATTTTATGGCTTATCAAATTAATTGTTGAGTACTTTTTTTGCTTTCTTTCATGATGTGATGATGCATTGCTCTTAAATAATGTTTTCTTTTTGGAATATTGTTTCACAGTTGAAGGTGGGGATTCAAGGTATAGATTTCTTAGCCAATTTAGGTAGAAAATTTTTCATTTTAACACTGCA

mRNA sequence

GGCAGTTCTACGTAAAAGAGAAAAAAAAAGAAAGAAAAAAACTGCAGCTTAAACGACGTCGTTACATTCCGCGCCCTTTTATTTCATAATATTATTTATCTACAGCGAAATACTGATGCCCTAAACTTGCAAATCTGAAGCACCGCCGTCTGTTTCTCCATCGAATTTCATCTTTGAGCCCTAATTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCCGCCGATTGGATTCACATTCGCACACCACTTTCAAATCTCGGTCAAGCATATTTGTATAATTACTGCGCTTCTTGTTCTGATCTGTTCCCGCTTCAACATTTTCAGCTACAGCGAGATTCTTGGACATTTGTTACTGTACAAATTATGAGGGGTAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGGAGAAGGGGACGGAGCCCTAGCCCTAGGGGGCGCTATGGTGGACGTGGAAGGGACAGGGACCTTCCCACTAGCCTTCTAGTTCGTAATCTTCGCCATGACTGCAGGCCCGAGGATCTTCGTAGACAATTTGGACAGTTTGGTGCTATTAAGGACATATACCTTCCGAAGGATTATTATACTGGAGAACCACGTGGTTTCGGTTTTGTTCAATATGTAGATCCTGCCGATGCTGCTGATGCTAAACACCAGATGGATGGCTGTGTTCTTCTTGGTAGGGAGTTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAACCATCTGATATGAGGGCAAGGGAGAGAGGAAGTCGCACAAACAGTGGACGATTTCATGATCGAAGAAGGTCTCCTCCACGATATTCTCGTTCGCCTCGTTACTCTCGTTCCCCGGCTCCACGCCATGCAAGGTATTCTCGTTCACCAGCTCCACGCCATGCAAGGTCTAGGTCCCGTAGTTATGATTACACTTCCCCACCACCAAAACAAAGGGCATGCTCTAGGTCGGTGTCCCCCCGTGACAGACGGGACAGTCGAGAGAGGTCATACCCTCGGCAGCCTAGCCGAGGTAGGTCATACTCCCAGTCTCCACGTCTCAATGGTTCAAGAAGTAGAAGCCAGAGTCCAGCGAGGGGCGGTAGCCGAAGTCAGAGTCCAGCGAGAGGCCGAAGTCGGAGCAGAAGTGTCAGCCGGAGCAGAAGTCCACGACGAAGTCCGAGGCATGAAGAAGAGTACAGAAGTGATCCAAATGGAGATAGGAGCCCTAGTCAGTAACCAACCCGCTAGAAACTTGGAAAGAAACAACTACAATGTACTATTGCCCCGCTTTAGGCTTCTCTCCCTTTGTATTGTTGAGTAGTGTCTGTTTGATGTTCTTAGGATTTTATGGCTTATCAAATTAATTGTTGAGTACTTTTTTTGCTTTCTTTCATGATGTGATGATGCATTGCTCTTAAATAATGTTTTCTTTTTGGAATATTGTTTCACAGTTGAAGGTGGGGATTCAAGGTATAGATTTCTTAGCCAATTTAGGTAGAAAATTTTTCATTTTAACACTGCA

Coding sequence (CDS)

ATGAGGGGTAGGAGTTATACTCCATCGCCGCCAAGGGGTTATGGGAGAAGGGGACGGAGCCCTAGCCCTAGGGGGCGCTATGGTGGACGTGGAAGGGACAGGGACCTTCCCACTAGCCTTCTAGTTCGTAATCTTCGCCATGACTGCAGGCCCGAGGATCTTCGTAGACAATTTGGACAGTTTGGTGCTATTAAGGACATATACCTTCCGAAGGATTATTATACTGGAGAACCACGTGGTTTCGGTTTTGTTCAATATGTAGATCCTGCCGATGCTGCTGATGCTAAACACCAGATGGATGGCTGTGTTCTTCTTGGTAGGGAGTTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAACCATCTGATATGAGGGCAAGGGAGAGAGGAAGTCGCACAAACAGTGGACGATTTCATGATCGAAGAAGGTCTCCTCCACGATATTCTCGTTCGCCTCGTTACTCTCGTTCCCCGGCTCCACGCCATGCAAGGTATTCTCGTTCACCAGCTCCACGCCATGCAAGGTCTAGGTCCCGTAGTTATGATTACACTTCCCCACCACCAAAACAAAGGGCATGCTCTAGGTCGGTGTCCCCCCGTGACAGACGGGACAGTCGAGAGAGGTCATACCCTCGGCAGCCTAGCCGAGGTAGGTCATACTCCCAGTCTCCACGTCTCAATGGTTCAAGAAGTAGAAGCCAGAGTCCAGCGAGGGGCGGTAGCCGAAGTCAGAGTCCAGCGAGAGGCCGAAGTCGGAGCAGAAGTGTCAGCCGGAGCAGAAGTCCACGACGAAGTCCGAGGCATGAAGAAGAGTACAGAAGTGATCCAAATGGAGATAGGAGCCCTAGTCAGTAA

Protein sequence

MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKKPSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGGSRSQSPARGRSRSRSVSRSRSPRRSPRHEEEYRSDPNGDRSPSQ

Homology

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BLAST of MC06g1050 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 8.0e-80
Identity = 188/287 (65.51%), Postives = 205/287 (71.43%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYG  GR RDLPTSLLVRNLRHDCR EDLR+ F Q
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYG--GRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FG +KDIYLP+DYYTG+PRGFGFVQ++DPADAADAKH MDG +LLGRELTVVFAEENRKK
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180
           P++MRARERG     GRF DRRR+PPRY     YSR         SRSP PR  RSRSRS
Sbjct: 121 PTEMRARERG----GGRFRDRRRTPPRY-----YSR---------SRSPPPRRGRSRSRS 180

Query: 181 YDYTSPPPKQRACSRSVSPRDRR-DSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARG 240
            DY SPPP+ R   RS+SPR+ R D R           RSYS+SP  +GSR RS +P RG
Sbjct: 181 GDYYSPPPR-RHHPRSISPREERYDGR-----------RSYSRSPASDGSRGRSLTPVRG 240

Query: 241 GSRSQSPARGRSRSRSVSRSRSP----RRSPRHEEEYRSDPNGDRSP 283
            SRS SP+  RS SRS  RSRSP     RS          P   RSP
Sbjct: 241 KSRSLSPSPRRSISRSPRRSRSPSPKRNRSVSPRRSISRSPRRSRSP 255

[Close]

BLAST of MC06g1050 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 2.0e-78
Identity = 186/292 (63.70%), Postives = 209/292 (71.58%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGR+GG  RD DLPTSLLVRNLRHDCR EDLRR F Q
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGG-SRDSDLPTSLLVRNLRHDCRQEDLRRPFEQ 60

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FG +KDIYLP+DYYTG+PRGFGF+Q++DPADAA+AKHQMDG +LLGRELTVVFAEENRKK
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180
           P++MR R+RG R+N  RF DRRRSPPRYSRSP                P  R  RSRSRS
Sbjct: 121 PTEMRTRDRGGRSN--RFQDRRRSPPRYSRSP----------------PPRRGRRSRSRS 180

Query: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240
             Y SPP K R  SRSVSP+DRR  +E          RSYS+SP  NGSR RS SP R  
Sbjct: 181 RGYNSPPAK-RHQSRSVSPQDRRYEKE----------RSYSRSPPHNGSRVRSGSPGRVK 240

Query: 241 SRSQSPARG----RSRSRSVSRSRS----PRRSPRHEEEYRSDPNGDRSPSQ 285
           S S+SP R     ++RS +  ++RS    PR+S       R   NGDRSPSQ
Sbjct: 241 SHSRSPRRSVSPRKNRSYTPEQARSQSPVPRQSRSPTPVPRGAQNGDRSPSQ 262

[Close]

BLAST of MC06g1050 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.4e-29
Identity = 121/278 (43.53%), Postives = 149/278 (53.60%), Query Frame = 0


Query: 4   RSYTP---SPP-RGYGRRGRSPSP-------RGRYGGRGRDRDLPTSLLVRNLRHDCRPE 63
           R Y+P   SPP RGYG RGRSP P        G  GG GR      SLLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 64  DLRRQFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVV 123
           +LR  F +FG ++D+Y+P+DYY+G+PRGF FV++VD  DA +A+  M+     GRE+TVV
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121

Query: 124 FAEENRKKPSDMRARER-GSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAP 183
            A E+RK+P +MR + R  SR  SG    R RS  R SRS   SRS +PR    SRS   
Sbjct: 122 VASESRKRPEEMRVKTRTRSREPSG---SRDRSHGR-SRSRSISRSRSPRRPSDSRS--- 181

Query: 184 RHARSRSRSYDYTSPPPKQRACSRSVSPRDRRDSR--ERSYPRQPSRGRSYSQSPRLNGS 243
              R RSRSY   SP P++    R   PR   D     RSY        + +     NG 
Sbjct: 182 ---RYRSRSY---SPAPRR----RGGPPRGEEDENYSRRSYSPGYEGAAAAAPDRDRNGD 241

Query: 244 RSRSQSPARGGSRSQSPARGRSRSRSVSRSRSPRRSPR 268
               + P       +   R  SRS S SRSRS   SPR
Sbjct: 242 NEIREKPGYEAEDRRRGGRAVSRSPSGSRSRSVEVSPR 262

[Close]

BLAST of MC06g1050 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-28
Identity = 104/243 (42.80%), Postives = 135/243 (55.56%), Query Frame = 0


Query: 2   RGRSYTP-----SPPRGYGRRGRSPSP-RGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLR 61
           R RSY+P     SPPR   R+G   +  R R   R  +   P+ LL+RNL  D RP DLR
Sbjct: 7   RSRSYSPRPRDRSPPR--ERKGYDDNRLRERPSSRDHESSGPSGLLIRNLPLDARPNDLR 66

Query: 62  RQFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAE 121
             F +FG +KDIYLP++YYTGEPRGFGFV+Y    DAA+A  +M+  V+ GRE+ +VFAE
Sbjct: 67  DSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAE 126

Query: 122 ENRKKPSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHAR 181
           ENRK P +MR     S  +        RSP R  RS   SRSP  R +R+          
Sbjct: 127 ENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRH---------- 186

Query: 182 SRSRSYDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQS 239
           S+ R  D  SP  + R+ SRS  PR+ R+ + R+  R P   R  +       SRSRS+S
Sbjct: 187 SKVREDDLYSPRRRSRSISRSPLPRNEREYKSRNC-RSPREERVLTPIRSRCLSRSRSRS 236

[Close]

BLAST of MC06g1050 vs. ExPASy Swiss-Prot
Match: O75494 (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.1e-24
Identity = 100/248 (40.32%), Postives = 139/248 (56.05%), Query Frame = 0


Query: 38  TSLLVRNLRHDCRPEDLRRQFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH 97
           TSL VRN+  D R EDLRR+FG++G I D+Y+P D+YT  PRGF +VQ+ D  DA DA H
Sbjct: 10  TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69

Query: 98  QMDGCVLLGRELTVVFAEENRKKPSDMRARERGSRTNSGRFHD-------------RRRS 157
            +D   + GR++ + FA+ +RK P+ M+A+E  +  +S R+ D             RRRS
Sbjct: 70  NLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRS 129

Query: 158 PPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDYTSPPPKQRACSRSVS-PRDRR 217
             R S    Y RS +PR++R    P  R  RSRS S D      + R+ SRS S  R R 
Sbjct: 130 RSR-SFDYNYRRSYSPRNSR----PTGRPRRSRSHS-DNDRFKHRNRSFSRSKSNSRSRS 189

Query: 218 DSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG------SRSQSPARGRSRSRSVS 266
            S+ +   +  SR RS S +     S++ S++  + G      SR + P R +S+SRS S
Sbjct: 190 KSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPRSKSQSRSQS 249

[Close]

BLAST of MC06g1050 vs. NCBI nr
Match: XP_022153263.1 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Momordica charantia])

HSP 1 Score: 539 bits (1388), Expect = 1.08e-192
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180
           PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS
Sbjct: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180

Query: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240
           YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG
Sbjct: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240

Query: 241 SRSQSPARGRSRSRSVSRSRSPRRSPRHEEEYRSDPNGDRSPSQ 284
           SRSQSPARGRSRSRSVSRSRSPRRSPRHEEEYRSDPNGDRSPSQ
Sbjct: 241 SRSQSPARGRSRSRSVSRSRSPRRSPRHEEEYRSDPNGDRSPSQ 284

[Close]

BLAST of MC06g1050 vs. NCBI nr
Match: XP_022153264.1 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Momordica charantia])

HSP 1 Score: 526 bits (1355), Expect = 1.00e-187
Identity = 280/284 (98.59%), Postives = 280/284 (98.59%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180
           PSDMRARERGS    GRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS
Sbjct: 121 PSDMRARERGS----GRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180

Query: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240
           YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG
Sbjct: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240

Query: 241 SRSQSPARGRSRSRSVSRSRSPRRSPRHEEEYRSDPNGDRSPSQ 284
           SRSQSPARGRSRSRSVSRSRSPRRSPRHEEEYRSDPNGDRSPSQ
Sbjct: 241 SRSQSPARGRSRSRSVSRSRSPRRSPRHEEEYRSDPNGDRSPSQ 280

[Close]

BLAST of MC06g1050 vs. NCBI nr
Match: XP_008450302.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cucumis melo])

HSP 1 Score: 455 bits (1170), Expect = 2.06e-159
Identity = 255/292 (87.33%), Postives = 261/292 (89.38%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GRGRD  LPTSLLVRNL HDCRPEDLRR FGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRD--LPTSLLVRNLSHDCRPEDLRRPFGQ 60

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180
           PSDMRARERGS TNSGRFHDRRRSP RYSRSPRYSRSPA R  RYSRSPAPRHARSRSRS
Sbjct: 121 PSDMRARERGSHTNSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRS 180

Query: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240
           YDY SPPPKQRA SRSVSPRDR DSRERS+PRQ SRGRSYS+SPRL+GSRSRS SP RG 
Sbjct: 181 YDYASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRG- 240

Query: 241 SRSQSPARGRS------RSRSVSRSRS--PRRSPRHEEEYRSDPNGDRSPSQ 284
            RS SP RGRS      RS+SVSRSRS  P+ SPRHEEEYRS+PNGDRSP Q
Sbjct: 241 -RSPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 288

[Close]

BLAST of MC06g1050 vs. NCBI nr
Match: XP_038879567.1 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Benincasa hispida])

HSP 1 Score: 454 bits (1169), Expect = 2.92e-159
Identity = 257/292 (88.01%), Postives = 264/292 (90.41%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GRGRD  LPTSLLVRNL HDCRPEDLRR FGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRD--LPTSLLVRNLSHDCRPEDLRRPFGQ 60

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180
           PSDMRARERGS TNSGR HDRRRSPPRYSRSPRYSRSPA RHARYSRSP PRHAR+RSRS
Sbjct: 121 PSDMRARERGSHTNSGRLHDRRRSPPRYSRSPRYSRSPAQRHARYSRSPPPRHARTRSRS 180

Query: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240
           YDY SPPPKQ+A SRSVSPRDR DSRERS+PRQ SRGR  S+SPRL+GSRSRSQSPAR G
Sbjct: 181 YDYASPPPKQKAYSRSVSPRDRPDSRERSFPRQQSRGRP-SRSPRLDGSRSRSQSPARAG 240

Query: 241 SRSQSPARGRS------RSRSVSRSRS--PRRSPRHEEEYRSDPNGDRSPSQ 284
           SRS SP RGRS      RS+SVSRSRS  PR SPRHEE YRS+PNGDRSPSQ
Sbjct: 241 SRSPSPVRGRSLSRSRSRSKSVSRSRSRSPRLSPRHEE-YRSEPNGDRSPSQ 288

[Close]

BLAST of MC06g1050 vs. NCBI nr
Match: XP_008450303.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Cucumis melo])

HSP 1 Score: 444 bits (1142), Expect = 3.27e-155
Identity = 252/292 (86.30%), Postives = 258/292 (88.36%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GRGRD  LPTSLLVRNL HDCRPEDLRR FGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRD--LPTSLLVRNLSHDCRPEDLRRPFGQ 60

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180
           PSDMRARERGS    GRFHDRRRSP RYSRSPRYSRSPA R  RYSRSPAPRHARSRSRS
Sbjct: 121 PSDMRARERGS----GRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRS 180

Query: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240
           YDY SPPPKQRA SRSVSPRDR DSRERS+PRQ SRGRSYS+SPRL+GSRSRS SP RG 
Sbjct: 181 YDYASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRG- 240

Query: 241 SRSQSPARGRS------RSRSVSRSRS--PRRSPRHEEEYRSDPNGDRSPSQ 284
            RS SP RGRS      RS+SVSRSRS  P+ SPRHEEEYRS+PNGDRSP Q
Sbjct: 241 -RSPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 284

[Close]

BLAST of MC06g1050 vs. ExPASy TrEMBL
Match: A0A6J1DH06 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020794 PE=4 SV=1)

HSP 1 Score: 539 bits (1388), Expect = 5.25e-193
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180
           PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS
Sbjct: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180

Query: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240
           YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG
Sbjct: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240

Query: 241 SRSQSPARGRSRSRSVSRSRSPRRSPRHEEEYRSDPNGDRSPSQ 284
           SRSQSPARGRSRSRSVSRSRSPRRSPRHEEEYRSDPNGDRSPSQ
Sbjct: 241 SRSQSPARGRSRSRSVSRSRSPRRSPRHEEEYRSDPNGDRSPSQ 284

[Close]

BLAST of MC06g1050 vs. ExPASy TrEMBL
Match: A0A6J1DIJ4 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020794 PE=4 SV=1)

HSP 1 Score: 526 bits (1355), Expect = 4.85e-188
Identity = 280/284 (98.59%), Postives = 280/284 (98.59%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180
           PSDMRARERGS    GRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS
Sbjct: 121 PSDMRARERGS----GRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180

Query: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240
           YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG
Sbjct: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240

Query: 241 SRSQSPARGRSRSRSVSRSRSPRRSPRHEEEYRSDPNGDRSPSQ 284
           SRSQSPARGRSRSRSVSRSRSPRRSPRHEEEYRSDPNGDRSPSQ
Sbjct: 241 SRSQSPARGRSRSRSVSRSRSPRRSPRHEEEYRSDPNGDRSPSQ 280

[Close]

BLAST of MC06g1050 vs. ExPASy TrEMBL
Match: A0A1S3BNX5 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491955 PE=4 SV=1)

HSP 1 Score: 455 bits (1170), Expect = 9.97e-160
Identity = 255/292 (87.33%), Postives = 261/292 (89.38%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GRGRD  LPTSLLVRNL HDCRPEDLRR FGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRD--LPTSLLVRNLSHDCRPEDLRRPFGQ 60

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180
           PSDMRARERGS TNSGRFHDRRRSP RYSRSPRYSRSPA R  RYSRSPAPRHARSRSRS
Sbjct: 121 PSDMRARERGSHTNSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRS 180

Query: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240
           YDY SPPPKQRA SRSVSPRDR DSRERS+PRQ SRGRSYS+SPRL+GSRSRS SP RG 
Sbjct: 181 YDYASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRG- 240

Query: 241 SRSQSPARGRS------RSRSVSRSRS--PRRSPRHEEEYRSDPNGDRSPSQ 284
            RS SP RGRS      RS+SVSRSRS  P+ SPRHEEEYRS+PNGDRSP Q
Sbjct: 241 -RSPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 288

[Close]

BLAST of MC06g1050 vs. ExPASy TrEMBL
Match: A0A1S3BPL2 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491955 PE=4 SV=1)

HSP 1 Score: 444 bits (1142), Expect = 1.58e-155
Identity = 252/292 (86.30%), Postives = 258/292 (88.36%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GRGRD  LPTSLLVRNL HDCRPEDLRR FGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRD--LPTSLLVRNLSHDCRPEDLRRPFGQ 60

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180
           PSDMRARERGS    GRFHDRRRSP RYSRSPRYSRSPA R  RYSRSPAPRHARSRSRS
Sbjct: 121 PSDMRARERGS----GRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRS 180

Query: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240
           YDY SPPPKQRA SRSVSPRDR DSRERS+PRQ SRGRSYS+SPRL+GSRSRS SP RG 
Sbjct: 181 YDYASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRG- 240

Query: 241 SRSQSPARGRS------RSRSVSRSRS--PRRSPRHEEEYRSDPNGDRSPSQ 284
            RS SP RGRS      RS+SVSRSRS  P+ SPRHEEEYRS+PNGDRSP Q
Sbjct: 241 -RSPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 284

[Close]

BLAST of MC06g1050 vs. ExPASy TrEMBL
Match: A0A0A0LZX6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G630290 PE=4 SV=1)

HSP 1 Score: 441 bits (1135), Expect = 1.22e-152
Identity = 250/294 (85.03%), Postives = 257/294 (87.41%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GRGRD  LPTSLLVRNL HDCRPEDLRR FGQ
Sbjct: 119 MRGRSYTPSPPRGYGRRGRSPSPRGRYVGRGRD--LPTSLLVRNLSHDCRPEDLRRPFGQ 178

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKH MDGCVLLGRELTVVFAEENRKK
Sbjct: 179 FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKK 238

Query: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180
           PSDMRARERGS    GR+HDRRRSPP   RSPRYSRSPA R  RYSRSPAPRHARSRSRS
Sbjct: 239 PSDMRARERGS----GRYHDRRRSPP---RSPRYSRSPAQRRGRYSRSPAPRHARSRSRS 298

Query: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240
           YDY S PPKQRA SRS+SPRDR DSRERS+PRQ SRGRSYS+SPRL+GSRSRSQSP + G
Sbjct: 299 YDYASQPPKQRAYSRSLSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSQSPTQPG 358

Query: 241 SRSQSPARGRSRSRSVSRS----------RSPRRSPRHEEEYRSDPNGDRSPSQ 284
           SRS SP RGRS SRS SRS          RSPRRSPRHEEEYRS+PNGDRSPSQ
Sbjct: 359 SRSPSPVRGRSLSRSRSRSKSVGRSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 403

[Close]

BLAST of MC06g1050 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 298.5 bits (763), Expect = 5.7e-81
Identity = 188/287 (65.51%), Postives = 205/287 (71.43%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYG  GR RDLPTSLLVRNLRHDCR EDLR+ F Q
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYG--GRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FG +KDIYLP+DYYTG+PRGFGFVQ++DPADAADAKH MDG +LLGRELTVVFAEENRKK
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180
           P++MRARERG     GRF DRRR+PPRY     YSR         SRSP PR  RSRSRS
Sbjct: 121 PTEMRARERG----GGRFRDRRRTPPRY-----YSR---------SRSPPPRRGRSRSRS 180

Query: 181 YDYTSPPPKQRACSRSVSPRDRR-DSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARG 240
            DY SPPP+ R   RS+SPR+ R D R           RSYS+SP  +GSR RS +P RG
Sbjct: 181 GDYYSPPPR-RHHPRSISPREERYDGR-----------RSYSRSPASDGSRGRSLTPVRG 240

Query: 241 GSRSQSPARGRSRSRSVSRSRSP----RRSPRHEEEYRSDPNGDRSP 283
            SRS SP+  RS SRS  RSRSP     RS          P   RSP
Sbjct: 241 KSRSLSPSPRRSISRSPRRSRSPSPKRNRSVSPRRSISRSPRRSRSP 255

[Close]

BLAST of MC06g1050 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 293.9 bits (751), Expect = 1.4e-79
Identity = 186/292 (63.70%), Postives = 209/292 (71.58%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGR+GG  RD DLPTSLLVRNLRHDCR EDLRR F Q
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGG-SRDSDLPTSLLVRNLRHDCRQEDLRRPFEQ 60

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FG +KDIYLP+DYYTG+PRGFGF+Q++DPADAA+AKHQMDG +LLGRELTVVFAEENRKK
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180
           P++MR R+RG R+N  RF DRRRSPPRYSRSP                P  R  RSRSRS
Sbjct: 121 PTEMRTRDRGGRSN--RFQDRRRSPPRYSRSP----------------PPRRGRRSRSRS 180

Query: 181 YDYTSPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGG 240
             Y SPP K R  SRSVSP+DRR  +E          RSYS+SP  NGSR RS SP R  
Sbjct: 181 RGYNSPPAK-RHQSRSVSPQDRRYEKE----------RSYSRSPPHNGSRVRSGSPGRVK 240

Query: 241 SRSQSPARG----RSRSRSVSRSRS----PRRSPRHEEEYRSDPNGDRSPSQ 285
           S S+SP R     ++RS +  ++RS    PR+S       R   NGDRSPSQ
Sbjct: 241 SHSRSPRRSVSPRKNRSYTPEQARSQSPVPRQSRSPTPVPRGAQNGDRSPSQ 262

[Close]

BLAST of MC06g1050 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 292.7 bits (748), Expect = 3.1e-79
Identity = 172/249 (69.08%), Postives = 189/249 (75.90%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYG  GR RDLPTSLLVRNLRHDCR EDLR+ F Q
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYG--GRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120
           FG +KDIYLP+DYYTG+PRGFGFVQ++DPADAADAKH MDG +LLGRELTVVFAEENRKK
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRS 180
           P++MRARERG     GRF DRRR+PPRY     YSR         SRSP PR  RSRSRS
Sbjct: 121 PTEMRARERG----GGRFRDRRRTPPRY-----YSR---------SRSPPPRRGRSRSRS 180

Query: 181 YDYTSPPPKQRACSRSVSPRDRR-DSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARG 240
            DY SPPP+ R   RS+SPR+ R D R           RSYS+SP  +GSR RS +P RG
Sbjct: 181 GDYYSPPPR-RHHPRSISPREERYDGR-----------RSYSRSPASDGSRGRSLTPVRG 217

Query: 241 GSRSQSPAR 249
            SRS SP +
Sbjct: 241 KSRSLSPTQ 217

[Close]

BLAST of MC06g1050 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 287.3 bits (734), Expect = 1.3e-77
Identity = 187/299 (62.54%), Postives = 204/299 (68.23%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYG  GR RDLPTSLLVRNLRHDCR EDLR+ F Q
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYG--GRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGAIKDIYLPKDYYTG------------EPRGFGFVQYVDPADAADAKHQMDGCVLLGRE 120
           FG +KDIYLP+DYYTG            +PRGFGFVQ++DPADAADAKH MDG +LLGRE
Sbjct: 61  FGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGYLLLGRE 120

Query: 121 LTVVFAEENRKKPSDMRARERGSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRS 180
           LTVVFAEENRKKP++MRARERG      RF DRRR+PPRY     YSR         SRS
Sbjct: 121 LTVVFAEENRKKPTEMRARERG---GGSRFRDRRRTPPRY-----YSR---------SRS 180

Query: 181 PAPRHARSRSRSYDYTSPPPKQRACSRSVSPRDRR-DSRERSYPRQPSRGRSYSQSPRLN 240
           P PR  RSRSRS DY SPPP+ R   RS+SPR+ R D R           RSYS+SP  +
Sbjct: 181 PPPRRGRSRSRSGDYYSPPPR-RHHPRSISPREERYDGR-----------RSYSRSPASD 240

Query: 241 GSRSRSQSPARGGSRSQSPARGRSRSRSVSRSRSP----RRSPRHEEEYRSDPNGDRSP 283
           GSR RS +P RG SRS SP+  RS SRS  RSRSP     RS          P   RSP
Sbjct: 241 GSRGRSLTPVRGKSRSLSPSPRRSISRSPRRSRSPSPKRNRSVSPRRSISRSPRRSRSP 268

[Close]

BLAST of MC06g1050 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 129.4 bits (324), Expect = 4.5e-30
Identity = 121/278 (43.53%), Postives = 149/278 (53.60%), Query Frame = 0


Query: 4   RSYTP---SPP-RGYGRRGRSPSP-------RGRYGGRGRDRDLPTSLLVRNLRHDCRPE 63
           R Y+P   SPP RGYG RGRSP P        G  GG GR      SLLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 64  DLRRQFGQFGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVV 123
           +LR  F +FG ++D+Y+P+DYY+G+PRGF FV++VD  DA +A+  M+     GRE+TVV
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121

Query: 124 FAEENRKKPSDMRARER-GSRTNSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAP 183
            A E+RK+P +MR + R  SR  SG    R RS  R SRS   SRS +PR    SRS   
Sbjct: 122 VASESRKRPEEMRVKTRTRSREPSG---SRDRSHGR-SRSRSISRSRSPRRPSDSRS--- 181

Query: 184 RHARSRSRSYDYTSPPPKQRACSRSVSPRDRRDSR--ERSYPRQPSRGRSYSQSPRLNGS 243
              R RSRSY   SP P++    R   PR   D     RSY        + +     NG 
Sbjct: 182 ---RYRSRSY---SPAPRR----RGGPPRGEEDENYSRRSYSPGYEGAAAAAPDRDRNGD 241

Query: 244 RSRSQSPARGGSRSQSPARGRSRSRSVSRSRSPRRSPR 268
               + P       +   R  SRS S SRSRS   SPR
Sbjct: 242 NEIREKPGYEAEDRRRGGRAVSRSPSGSRSRSVEVSPR 262

The following BLAST results are available for this feature:

BLAST of MC06g1050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEU4	8.0e-80	65.51	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	2.0e-78	63.70	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q8L3X8	6.4e-29	43.53	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
Q1PDV2	1.1e-28	42.80	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
O75494	2.1e-24	40.32	Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 S...	[more]

BLAST of MC06g1050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153263.1	1.08e-192	100.00	serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Momordica char...	[more]
XP_022153264.1	1.00e-187	98.59	serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Momordica char...	[more]
XP_008450302.1	2.06e-159	87.33	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cuc...	[more]
XP_038879567.1	2.92e-159	88.01	serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Benincasa hisp...	[more]
XP_008450303.1	3.27e-155	86.30	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Cuc...	[more]

BLAST of MC06g1050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DH06	5.25e-193	100.00	serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Momordica ch...	[more]
A0A6J1DIJ4	4.85e-188	98.59	serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Momordica ch...	[more]
A0A1S3BNX5	9.97e-160	87.33	serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Cucumis melo...	[more]
A0A1S3BPL2	1.58e-155	86.30	serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Cucumis melo...	[more]
A0A0A0LZX6	1.22e-152	85.03	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G630290 PE=4 SV...	[more]

BLAST of MC06g1050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55310.1	5.7e-81	65.51	SC35-like splicing factor 33	[more]
AT3G13570.1	1.4e-79	63.70	SC35-like splicing factor 30A	[more]
AT1G55310.2	3.1e-79	69.08	SC35-like splicing factor 33	[more]
AT1G55310.3	1.3e-77	62.54	SC35-like splicing factor 33	[more]
AT3G55460.1	4.5e-30	43.53	SC35-like splicing factor 30	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 39..112 e-value: 9.8E-22 score: 88.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 40..109 e-value: 9.0E-19 score: 67.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 38..116 score: 17.06296
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 31..147 e-value: 1.8E-26 score: 94.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..284
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..213
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..163
None	No IPR available	PANTHER	PTHR23147:SF155	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A	coord: 1..163
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 19..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g1050.1	MC06g1050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding