MC06g0920 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g0920
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC06: 7749749 .. 7750144 (+)
RNA-Seq ExpressionMC06g0920
SyntenyMC06g0920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGCATGGGATTTGTTTGCTTACAGATGCACTCAGTGATGTTGGCAGGGGCATGACAGGCAGCGGGGAGGCCCAAAGCGAGGGTGCCATTGATTTTGAGGCCAAGATTTGGGTCATCCTTGTCCTTGATGAGGACACAGAGGCACTTCTTGCTCTTCTGCACCACCTGCTTCAGTCCATTGCAGCAGTCGATGGTAGGCGTTTCTGCATCGCCGCTGACATAAGGCAGGCAAGGGGCGAGGCCGATGAGTTGGTCGGAGCAATCTGCCCTGTCTTGGTCTATGGTTGAAGTTGCAGAAAAAGCTTGAAGGAGAAGCAAATTGCAGAAGAGAGAGAGAGCTGTAAACTTGAATTCCATGGAGATAGAGAGAGAGACAGGGAAAAAGAGAAGATGG

mRNA sequence

AAAAGCATGGGATTTGTTTGCTTACAGATGCACTCAGTGATGTTGGCAGGGGCATGACAGGCAGCGGGGAGGCCCAAAGCGAGGGTGCCATTGATTTTGAGGCCAAGATTTGGGTCATCCTTGTCCTTGATGAGGACACAGAGGCACTTCTTGCTCTTCTGCACCACCTGCTTCAGTCCATTGCAGCAGTCGATGGTAGGCGTTTCTGCATCGCCGCTGACATAAGGCAGGCAAGGGGCGAGGCCGATGAGTTGGTCGGAGCAATCTGCCCTGTCTTGGTCTATGGTTGAAGTTGCAGAAAAAGCTTGAAGGAGAAGCAAATTGCAGAAGAGAGAGAGAGCTGTAAACTTGAATTCCATGGAGATAGAGAGAGAGACAGGGAAAAAGAGAAGATGG

Coding sequence (CDS)

AAAAGCATGGGATTTGTTTGCTTACAGATGCACTCAGTGATGTTGGCAGGGGCATGACAGGCAGCGGGGAGGCCCAAAGCGAGGGTGCCATTGATTTTGAGGCCAAGATTTGGGTCATCCTTGTCCTTGATGAGGACACAGAGGCACTTCTTGCTCTTCTGCACCACCTGCTTCAGTCCATTGCAGCAGTCGATGGTAGGCGTTTCTGCATCGCCGCTGACATAAGGCAGGCAAGGGGCGAGGCCGATGAGTTGGTCGGAGCAATCTGCCCTGTCTTGGTCTATGGTTGAAGTTGCAGAAAAAGCTTGAAGGAGAAGCAAATTGCAGAAGAGAGAGAGAGCTGTAAACTTGAATTCCATGGAGATAGAGAGAGAGACAGGGAAAAAGAGAAGATGG

Protein sequence

KSMGFVCLQMHSVMLAGAUQAAGRPKARVPLILRPRFGSSLSLMRTQRHFLLFCTTCFSPLQQSMVGVSASPLTUGRQGARPMSWSEQSALSWSMVEVAEKAURRSKLQKRERAVNLNSMEIERETGKKRRW
Homology
BLAST of MC06g0920 vs. NCBI nr
Match: ERN10187.1 (hypothetical protein AMTR_s00433p00012150, partial [Amborella trichopoda])

HSP 1 Score: 68.2 bits (165), Expect = 9.24e-12
Identity = 40/78 (51.28%), Postives = 46/78 (58.97%), Query Frame = 0

Query: 18 AXQAAGRPKARVPLILRPRFGSSLSLMRTQRHFLLFCTTCFSPLQQSMVGVSASPLTXGR 77
          A Q  G    R  L L  R GS   L+R  +HF LF TTCFSPLQQS+VG +ASP T  R
Sbjct: 6  ALQEWGSVAVREVLFLMRRLGSVEYLIRMHKHFPLFSTTCFSPLQQSLVGTAASPCTYSR 65

Query: 78 QGARPMSWSEQSALSWSM 95
            A P+S S Q  LS +M
Sbjct: 66 HVASPVSCSVQLFLSSTM 83

BLAST of MC06g0920 vs. NCBI nr
Match: KAG6534615.1 (hypothetical protein ZIOFF_008518 [Zingiber officinale])

HSP 1 Score: 60.8 bits (146), Expect = 3.86e-08
Identity = 36/67 (53.73%), Postives = 38/67 (56.72%), Query Frame = 0

Query: 9   QMH-SVMLAGAXQAAGRPKARVPLILRPRFGSSLSLMRTQRHFLLFCTTCFSPLQQSMVG 68
           ++H S  LAG  Q  G   AR  LI  P  GS  SL   QRHF LF  TCFSP QQS VG
Sbjct: 139 ELHLSETLAGTLQRVGMSSARETLIRMPSCGSLRSLTSMQRHFRLFAVTCFSPEQQSGVG 198

Query: 69  VSASPLT 74
             ASP T
Sbjct: 199 DGASPCT 205

BLAST of MC06g0920 vs. NCBI nr
Match: KAG6538949.1 (hypothetical protein ZIOFF_004101 [Zingiber officinale])

HSP 1 Score: 58.2 bits (139), Expect = 6.09e-08
Identity = 35/66 (53.03%), Postives = 35/66 (53.03%), Query Frame = 0

Query: 27 ARVPLILRPRFGSSLSLMRTQRHFLLFCTTCFSPLQQSMVGVSASPLTXGRQGARPMSWS 86
          AR  LI  P  GS  SL   QRHF LF  TCFSP QQS VG  ASP T       P SW 
Sbjct: 4  ARETLIRMPSCGSLRSLTSMQRHFRLFAVTCFSPEQQSGVGDGASPCTYCMHVDSPNSWL 63

Query: 87 EQSALS 92
            SA S
Sbjct: 64 AHSARS 69

BLAST of MC06g0920 vs. ExPASy TrEMBL
Match: W1PJP7 (Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s00433p00012150 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.47e-12
Identity = 40/78 (51.28%), Postives = 46/78 (58.97%), Query Frame = 0

Query: 18 AXQAAGRPKARVPLILRPRFGSSLSLMRTQRHFLLFCTTCFSPLQQSMVGVSASPLTXGR 77
          A Q  G    R  L L  R GS   L+R  +HF LF TTCFSPLQQS+VG +ASP T  R
Sbjct: 6  ALQEWGSVAVREVLFLMRRLGSVEYLIRMHKHFPLFSTTCFSPLQQSLVGTAASPCTYSR 65

Query: 78 QGARPMSWSEQSALSWSM 95
            A P+S S Q  LS +M
Sbjct: 66 HVASPVSCSVQLFLSSTM 83

BLAST of MC06g0920 vs. ExPASy TrEMBL
Match: A0A0E0KKD6 (Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.08e-10
Identity = 43/84 (51.19%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 11  HSVMLAGAXQAAGRPKARVPLILRPRFGSSLSLMRTQRHFLLFCTTCFSPLQQSMVGVSA 70
           HS  +A   QA GR  ARV L+  P  GSS SL  T RHFLL  TTC SP QQS+VG  A
Sbjct: 48  HSEKVAEMEQAEGRSMARVTLMRNPSAGSSRSLTSTHRHFLLPATTCPSPAQQSLVGALA 107

Query: 71  SPL--TXGRQGARPMSWSEQSALS 92
                T  R  A  +S S  SALS
Sbjct: 108 VAFSSTYVRHVASAISLSAHSALS 131

BLAST of MC06g0920 vs. ExPASy TrEMBL
Match: A0A5J5AAG2 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_035178 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 8.46e-04
Identity = 30/64 (46.88%), Postives = 35/64 (54.69%), Query Frame = 0

Query: 47  QRHFLLFCTTCFSPLQQSMVGVSASPLTXG----RQGARPMSW----SEQSALSWSMVEV 102
           QRH LLFC TC  P+QQS VG  ASPLT      RQ  +  S      E   ++ SM+ V
Sbjct: 2   QRHILLFCRTCLRPVQQSRVGAFASPLTEWGCVVRQRIKVQSLVPSVCEVEIVTNSMIIV 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
ERN10187.19.24e-1251.28hypothetical protein AMTR_s00433p00012150, partial [Amborella trichopoda][more]
KAG6534615.13.86e-0853.73hypothetical protein ZIOFF_008518 [Zingiber officinale][more]
KAG6538949.16.09e-0853.03hypothetical protein ZIOFF_004101 [Zingiber officinale][more]
Match NameE-valueIdentityDescription
W1PJP74.47e-1251.28Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s004... [more]
A0A0E0KKD62.08e-1051.19Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1[more]
A0A5J5AAG28.46e-0446.88Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_035178 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g0920.1MC06g0920.1mRNA