MC06g0905 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0905
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	NAC domain-containing protein
Location	MC06: 7601078 .. 7601605 (-)
RNA-Seq Expression	MC06g0905
Synteny	MC06g0905

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTTCGACCTCTATGGCAACCATGAGCCATGGCAAGTTTTCGACCTATTTGGAGGAGTCGATGGCCAAGATCTCTACTTCTTCACCCAGCTCAAGAGGAAGTGGCCTACCAAACAAGACTCCTCTCGCATCAGCCGTCGAGTTGGTACCAATGGCGGTACTTGGAGCGGTGAGAATTCTGAGACTCCTGTTTTATCTTCCGTCACGGGTGGTCTTATTGGTTTCTCCAAACGCTTCCGTTATGAGAATGGTGGATTAGAACACCATGGTGAGTGGATTATGAAAGAGTTTAGTTTGGACGAAGCGTATTTGCCTAACGAAGGCAGTGACTATGTTCTTTGCCGGATTAAAAAGAATGATAGACCGAAAAAGAAAGGGACCAAGAGGAAATTCAATGAGCTTGAGCAAGAATCACTAGCACCACAACCCCCATCTTCGTCAGTTGTACCATGGGGGCAACAATTACCAGCATCAGAGTCTCAACGTTCTTTATTTGCTCAGTTGGAACAACTATTATCAGTACCAGAA

mRNA sequence

GATTTCGACCTCTATGGCAACCATGAGCCATGGCAAGTTTTCGACCTATTTGGAGGAGTCGATGGCCAAGATCTCTACTTCTTCACCCAGCTCAAGAGGAAGTGGCCTACCAAACAAGACTCCTCTCGCATCAGCCGTCGAGTTGGTACCAATGGCGGTACTTGGAGCGGTGAGAATTCTGAGACTCCTGTTTTATCTTCCGTCACGGGTGGTCTTATTGGTTTCTCCAAACGCTTCCGTTATGAGAATGGTGGATTAGAACACCATGGTGAGTGGATTATGAAAGAGTTTAGTTTGGACGAAGCGTATTTGCCTAACGAAGGCAGTGACTATGTTCTTTGCCGGATTAAAAAGAATGATAGACCGAAAAAGAAAGGGACCAAGAGGAAATTCAATGAGCTTGAGCAAGAATCACTAGCACCACAACCCCCATCTTCGTCAGTTGTACCATGGGGGCAACAATTACCAGCATCAGAGTCTCAACGTTCTTTATTTGCTCAGTTGGAACAACTATTATCAGTACCAGAA

Coding sequence (CDS)

GATTTCGACCTCTATGGCAACCATGAGCCATGGCAAGTTTTCGACCTATTTGGAGGAGTCGATGGCCAAGATCTCTACTTCTTCACCCAGCTCAAGAGGAAGTGGCCTACCAAACAAGACTCCTCTCGCATCAGCCGTCGAGTTGGTACCAATGGCGGTACTTGGAGCGGTGAGAATTCTGAGACTCCTGTTTTATCTTCCGTCACGGGTGGTCTTATTGGTTTCTCCAAACGCTTCCGTTATGAGAATGGTGGATTAGAACACCATGGTGAGTGGATTATGAAAGAGTTTAGTTTGGACGAAGCGTATTTGCCTAACGAAGGCAGTGACTATGTTCTTTGCCGGATTAAAAAGAATGATAGACCGAAAAAGAAAGGGACCAAGAGGAAATTCAATGAGCTTGAGCAAGAATCACTAGCACCACAACCCCCATCTTCGTCAGTTGTACCATGGGGGCAACAATTACCAGCATCAGAGTCTCAACGTTCTTTATTTGCTCAGTTGGAACAACTATTATCAGTACCAGAA

Protein sequence

DFDLYGNHEPWQVFDLFGGVDGQDLYFFTQLKRKWPTKQDSSRISRRVGTNGGTWSGENSETPVLSSVTGGLIGFSKRFRYENGGLEHHGEWIMKEFSLDEAYLPNEGSDYVLCRIKKNDRPKKKGTKRKFNELEQESLAPQPPSSSVVPWGQQLPASESQRSLFAQLEQLLSVPE

Homology

[Close]

BLAST of MC06g0905 vs. NCBI nr
Match: XP_004139160.1 (NAC domain-containing protein 105 [Cucumis sativus] >KAE8653567.1 hypothetical protein Csa_006844 [Cucumis sativus])

HSP 1 Score: 146 bits (368), Expect = 1.78e-39
Identity = 74/146 (50.68%), Postives = 102/146 (69.86%), Query Frame = 0


Query: 1   DFDLYGNHEPWQVFDLFGGVDGQDLYFFTQLKRKWPTKQD-SSRISRRVGTNGGTWSGEN 60
           DFDLYG  EPW+++  FGG+DG+DLYFFT+LKR      + S+ ++R++G   GTWSGEN
Sbjct: 51  DFDLYGGVEPWEIWQSFGGIDGEDLYFFTKLKRSTTNCGNLSTHVNRKIGLVNGTWSGEN 110

Query: 61  SETPV-LSSVTGGLIGFSKRFRYENGGLE-HHGEWIMKEFSLDEAYLPNEG--SDYVLCR 120
           S +P+ ++     +IG+ KRFRYEN  LE HHGEWIM E+S+ + YL  EG  S+YVLCR
Sbjct: 111 SASPIYVNENCEEIIGYRKRFRYENESLEEHHGEWIMHEYSMHQRYLRCEGVDSNYVLCR 170

Query: 121 IKKNDRPKKKGTKRKFNELEQESLAP 141
           ++KN+R      KRK  E++ E+  P
Sbjct: 171 MRKNER-----VKRKLLEIQGEAKQP 191

[Close]

BLAST of MC06g0905 vs. NCBI nr
Match: XP_004142192.1 (NAC domain-containing protein 83 [Cucumis sativus] >KGN54288.1 hypothetical protein Csa_017977 [Cucumis sativus])

HSP 1 Score: 145 bits (367), Expect = 2.83e-39
Identity = 73/130 (56.15%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 1   DFDLYGNHEPWQVFDLFGGVDGQDLYFFTQLKRKWPTKQD-SSRISRRVGTNGGTWSGEN 60
           DFDLYG  EPW+++  FGG+DG+DLYFFT+LKR      + S+ I+R++G   GTWSGEN
Sbjct: 47  DFDLYGGVEPWEIWQSFGGIDGEDLYFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGEN 106

Query: 61  SETPV-LSSVTGGLIGFSKRFRYENGGLE-HHGEWIMKEFSLDEAYLPNEGSD--YVLCR 120
           S +P+ ++     +IG+ KRFRYEN  LE HHGEWIM E+SL   YL  EG D  YVLCR
Sbjct: 107 SASPIYVNKDHEQIIGYRKRFRYENESLEEHHGEWIMHEYSLHPDYLRCEGVDPNYVLCR 166

Query: 121 IKKNDRPKKK 125
           I+KN R K+K
Sbjct: 167 IRKNQRAKRK 176

[Close]

BLAST of MC06g0905 vs. NCBI nr
Match: TYK12066.1 (NAC domain-containing protein 83-like [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 3.75e-39
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 1   DFDLYGNHEPWQVFDLFGGVDGQDLYFFTQLKRKWPT-KQDSSRISRRVGTNGGTWSGEN 60
           DFDLYG  EPW+++  F G+DG+DLYFFT+LKR      Q S+ ISR++G   GTWSGEN
Sbjct: 47  DFDLYGGTEPWEIWQSFKGIDGEDLYFFTKLKRSTKNCGQLSAHISRKIGLANGTWSGEN 106

Query: 61  SETPVLSSVTGG-LIGFSKRFRYENGGLE-HHGEWIMKEFSLDEAYLPNEGSD--YVLCR 120
           S TP+ ++     +IG+ KRFRYEN  +E HHGEWIM E+ L ++YL  +  D  YVLCR
Sbjct: 107 SATPIFANEDDEQIIGYRKRFRYENDQVEEHHGEWIMHEYRLHQSYLAYQDVDHNYVLCR 166

Query: 121 IKKNDRPKKK 125
           I+KN+R K+K
Sbjct: 167 IRKNERAKRK 176

[Close]

BLAST of MC06g0905 vs. NCBI nr
Match: XP_008443554.1 (PREDICTED: protein SOMBRERO-like [Cucumis melo])

HSP 1 Score: 144 bits (364), Expect = 4.99e-39
Identity = 71/131 (54.20%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 1   DFDLYGNHEPWQVFDLFGGVDGQDLYFFTQLKRKWPTKQD-SSRISRRVGTNGGTWSGEN 60
           DFDLYG  EPW+++  F G+DG+DLYFFT+LKR      + S+ I+R++G+  GTWSGEN
Sbjct: 47  DFDLYGGIEPWEIWQSFKGIDGEDLYFFTKLKRSTTNSGNLSTHINRKIGSANGTWSGEN 106

Query: 61  SETPVLSSVTGG--LIGFSKRFRYENGGL-EHHGEWIMKEFSLDEAYLPNEGSD--YVLC 120
           S TP+ ++      +IG+ KRFRYEN  L EHHGEWIM E+SL + +L  +G D  YVLC
Sbjct: 107 SATPIYANEDDHEQIIGYRKRFRYENDQLQEHHGEWIMHEYSLHQDHLKCQGVDPNYVLC 166

Query: 121 RIKKNDRPKKK 125
           RI+KN+R K+K
Sbjct: 167 RIRKNERAKRK 177

[Close]

BLAST of MC06g0905 vs. NCBI nr
Match: KAA0053644.1 (protein SOMBRERO-like [Cucumis melo var. makuwa] >TYK00815.1 protein SOMBRERO-like [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (364), Expect = 4.99e-39
Identity = 71/131 (54.20%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 1   DFDLYGNHEPWQVFDLFGGVDGQDLYFFTQLKRKWPTKQD-SSRISRRVGTNGGTWSGEN 60
           DFDLYG  EPW+++  F G+DG+DLYFFT+LKR      + S+ I+R++G+  GTWSGEN
Sbjct: 47  DFDLYGGIEPWEIWQSFKGIDGEDLYFFTKLKRSTTNSGNLSTHINRKIGSANGTWSGEN 106

Query: 61  SETPVLSSVTGG--LIGFSKRFRYENGGL-EHHGEWIMKEFSLDEAYLPNEGSD--YVLC 120
           S TP+ ++      +IG+ KRFRYEN  L EHHGEWIM E+SL + +L  +G D  YVLC
Sbjct: 107 SATPIYANEDDHEQIIGYRKRFRYENDQLQEHHGEWIMHEYSLHQDHLKCQGVDPNYVLC 166

Query: 121 RIKKNDRPKKK 125
           RI+KN+R K+K
Sbjct: 167 RIRKNERAKRK 177

[Close]

BLAST of MC06g0905 vs. ExPASy TrEMBL
Match: A0A0A0KXM1 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G296900 PE=4 SV=1)

HSP 1 Score: 145 bits (367), Expect = 1.37e-39
Identity = 73/130 (56.15%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 1   DFDLYGNHEPWQVFDLFGGVDGQDLYFFTQLKRKWPTKQD-SSRISRRVGTNGGTWSGEN 60
           DFDLYG  EPW+++  FGG+DG+DLYFFT+LKR      + S+ I+R++G   GTWSGEN
Sbjct: 47  DFDLYGGVEPWEIWQSFGGIDGEDLYFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGEN 106

Query: 61  SETPV-LSSVTGGLIGFSKRFRYENGGLE-HHGEWIMKEFSLDEAYLPNEGSD--YVLCR 120
           S +P+ ++     +IG+ KRFRYEN  LE HHGEWIM E+SL   YL  EG D  YVLCR
Sbjct: 107 SASPIYVNKDHEQIIGYRKRFRYENESLEEHHGEWIMHEYSLHPDYLRCEGVDPNYVLCR 166

Query: 121 IKKNDRPKKK 125
           I+KN R K+K
Sbjct: 167 IRKNQRAKRK 176

[Close]

BLAST of MC06g0905 vs. ExPASy TrEMBL
Match: A0A0A0M0I5 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G652300 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 1.59e-39
Identity = 74/146 (50.68%), Postives = 102/146 (69.86%), Query Frame = 0


Query: 1   DFDLYGNHEPWQVFDLFGGVDGQDLYFFTQLKRKWPTKQD-SSRISRRVGTNGGTWSGEN 60
           DFDLYG  EPW+++  FGG+DG+DLYFFT+LKR      + S+ ++R++G   GTWSGEN
Sbjct: 77  DFDLYGGVEPWEIWQSFGGIDGEDLYFFTKLKRSTTNCGNLSTHVNRKIGLVNGTWSGEN 136

Query: 61  SETPV-LSSVTGGLIGFSKRFRYENGGLE-HHGEWIMKEFSLDEAYLPNEG--SDYVLCR 120
           S +P+ ++     +IG+ KRFRYEN  LE HHGEWIM E+S+ + YL  EG  S+YVLCR
Sbjct: 137 SASPIYVNENCEEIIGYRKRFRYENESLEEHHGEWIMHEYSMHQRYLRCEGVDSNYVLCR 196

Query: 121 IKKNDRPKKKGTKRKFNELEQESLAP 141
           ++KN+R      KRK  E++ E+  P
Sbjct: 197 MRKNER-----VKRKLLEIQGEAKQP 217

[Close]

BLAST of MC06g0905 vs. ExPASy TrEMBL
Match: A0A5D3CNQ3 (NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00810 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 1.81e-39
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 1   DFDLYGNHEPWQVFDLFGGVDGQDLYFFTQLKRKWPT-KQDSSRISRRVGTNGGTWSGEN 60
           DFDLYG  EPW+++  F G+DG+DLYFFT+LKR      Q S+ ISR++G   GTWSGEN
Sbjct: 47  DFDLYGGTEPWEIWQSFKGIDGEDLYFFTKLKRSTKNCGQLSAHISRKIGLANGTWSGEN 106

Query: 61  SETPVLSSVTGG-LIGFSKRFRYENGGLE-HHGEWIMKEFSLDEAYLPNEGSD--YVLCR 120
           S TP+ ++     +IG+ KRFRYEN  +E HHGEWIM E+ L ++YL  +  D  YVLCR
Sbjct: 107 SATPIFANEDDEQIIGYRKRFRYENDQVEEHHGEWIMHEYRLHQSYLAYQDVDHNYVLCR 166

Query: 121 IKKNDRPKKK 125
           I+KN+R K+K
Sbjct: 167 IRKNERAKRK 176

[Close]

BLAST of MC06g0905 vs. ExPASy TrEMBL
Match: A0A5D3BNU6 (Protein SOMBRERO-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00160 PE=4 SV=1)

HSP 1 Score: 144 bits (364), Expect = 2.42e-39
Identity = 71/131 (54.20%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 1   DFDLYGNHEPWQVFDLFGGVDGQDLYFFTQLKRKWPTKQD-SSRISRRVGTNGGTWSGEN 60
           DFDLYG  EPW+++  F G+DG+DLYFFT+LKR      + S+ I+R++G+  GTWSGEN
Sbjct: 47  DFDLYGGIEPWEIWQSFKGIDGEDLYFFTKLKRSTTNSGNLSTHINRKIGSANGTWSGEN 106

Query: 61  SETPVLSSVTGG--LIGFSKRFRYENGGL-EHHGEWIMKEFSLDEAYLPNEGSD--YVLC 120
           S TP+ ++      +IG+ KRFRYEN  L EHHGEWIM E+SL + +L  +G D  YVLC
Sbjct: 107 SATPIYANEDDHEQIIGYRKRFRYENDQLQEHHGEWIMHEYSLHQDHLKCQGVDPNYVLC 166

Query: 121 RIKKNDRPKKK 125
           RI+KN+R K+K
Sbjct: 167 RIRKNERAKRK 177

[Close]

BLAST of MC06g0905 vs. ExPASy TrEMBL
Match: A0A1S3B941 (protein SOMBRERO-like OS=Cucumis melo OX=3656 GN=LOC103487114 PE=4 SV=1)

HSP 1 Score: 144 bits (364), Expect = 2.42e-39
Identity = 71/131 (54.20%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 1   DFDLYGNHEPWQVFDLFGGVDGQDLYFFTQLKRKWPTKQD-SSRISRRVGTNGGTWSGEN 60
           DFDLYG  EPW+++  F G+DG+DLYFFT+LKR      + S+ I+R++G+  GTWSGEN
Sbjct: 47  DFDLYGGIEPWEIWQSFKGIDGEDLYFFTKLKRSTTNSGNLSTHINRKIGSANGTWSGEN 106

Query: 61  SETPVLSSVTGG--LIGFSKRFRYENGGL-EHHGEWIMKEFSLDEAYLPNEGSD--YVLC 120
           S TP+ ++      +IG+ KRFRYEN  L EHHGEWIM E+SL + +L  +G D  YVLC
Sbjct: 107 SATPIYANEDDHEQIIGYRKRFRYENDQLQEHHGEWIMHEYSLHQDHLKCQGVDPNYVLC 166

Query: 121 RIKKNDRPKKK 125
           RI+KN+R K+K
Sbjct: 167 RIRKNERAKRK 177

The following BLAST results are available for this feature:

BLAST of MC06g0905 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g0905 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139160.1	1.78e-39	50.68	NAC domain-containing protein 105 [Cucumis sativus] >KAE8653567.1 hypothetical p...	[more]
XP_004142192.1	2.83e-39	56.15	NAC domain-containing protein 83 [Cucumis sativus] >KGN54288.1 hypothetical prot...	[more]
TYK12066.1	3.75e-39	54.62	NAC domain-containing protein 83-like [Cucumis melo var. makuwa]	[more]
XP_008443554.1	4.99e-39	54.20	PREDICTED: protein SOMBRERO-like [Cucumis melo]	[more]
KAA0053644.1	4.99e-39	54.20	protein SOMBRERO-like [Cucumis melo var. makuwa] >TYK00815.1 protein SOMBRERO-li...	[more]

BLAST of MC06g0905 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXM1	1.37e-39	56.15	NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G296900 PE=4 SV...	[more]
A0A0A0M0I5	1.59e-39	50.68	NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G652300 PE=4 SV...	[more]
A0A5D3CNQ3	1.81e-39	54.62	NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BNU6	2.42e-39	54.20	Protein SOMBRERO-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15...	[more]
A0A1S3B941	2.42e-39	54.20	protein SOMBRERO-like OS=Cucumis melo OX=3656 GN=LOC103487114 PE=4 SV=1	[more]

BLAST of MC06g0905 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 4..99 e-value: 2.4E-9 score: 38.2
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 1..119 score: 22.045082
IPR036093	NAC domain superfamily	GENE3D	2.170.150.80	NAC domain	coord: 1..124 e-value: 1.4E-20 score: 75.6
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 7..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..155
None	No IPR available	PANTHER	PTHR31989	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	coord: 1..134
None	No IPR available	PANTHER	PTHR31989:SF220	NAC TRANSCRIPTION FACTOR-LIKE PROTEIN	coord: 1..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0905.1	MC06g0905.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding