MC06g0873 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g0873
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionNuclear polyadenylated RNA-binding protein
LocationMC06: 7269158 .. 7269499 (-)
RNA-Seq ExpressionMC06g0873
SyntenyMC06g0873
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTTTGGATGTGTAAGATCCACTGTCCTTCATCCTTTTGCCTCTGCCAACCTTCCCCTCAAATAAATACCACTGGATCAGTACCACTGAAATTGGAAAACTCACCACATTTGCCTTCAGAAGTTGAGGCAGTCATTGGAACTTCTGTTTCCATTGTTGATACCTTTGAATTCAAGCAAGAGTGCAGAGATGACAAAGAGCAGGAACCTGAGTATGGAATCAAGAGCAGTCTGAGGAAGACAAGTTTGAAGTTGGGTGCCCCGGAGGGGAAACATGCGAAAAAAGTACAATGGATGGATTTTTCAGGCAAAGAACTTGTTGAGATCAGGGAATTTGAA

mRNA sequence

ATGAGGTTTTGGATGTGTAAGATCCACTGTCCTTCATCCTTTTGCCTCTGCCAACCTTCCCCTCAAATAAATACCACTGGATCAGTACCACTGAAATTGGAAAACTCACCACATTTGCCTTCAGAAGTTGAGGCAGTCATTGGAACTTCTGTTTCCATTGTTGATACCTTTGAATTCAAGCAAGAGTGCAGAGATGACAAAGAGCAGGAACCTGAGTATGGAATCAAGAGCAGTCTGAGGAAGACAAGTTTGAAGTTGGGTGCCCCGGAGGGGAAACATGCGAAAAAAGTACAATGGATGGATTTTTCAGGCAAAGAACTTGTTGAGATCAGGGAATTTGAA

Coding sequence (CDS)

ATGAGGTTTTGGATGTGTAAGATCCACTGTCCTTCATCCTTTTGCCTCTGCCAACCTTCCCCTCAAATAAATACCACTGGATCAGTACCACTGAAATTGGAAAACTCACCACATTTGCCTTCAGAAGTTGAGGCAGTCATTGGAACTTCTGTTTCCATTGTTGATACCTTTGAATTCAAGCAAGAGTGCAGAGATGACAAAGAGCAGGAACCTGAGTATGGAATCAAGAGCAGTCTGAGGAAGACAAGTTTGAAGTTGGGTGCCCCGGAGGGGAAACATGCGAAAAAAGTACAATGGATGGATTTTTCAGGCAAAGAACTTGTTGAGATCAGGGAATTTGAA

Protein sequence

MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE
Homology
[Close]
BLAST of MC06g0873 vs. NCBI nr
Match: XP_022147688.1 (uncharacterized protein LOC111016556 [Momordica charantia])

HSP 1 Score: 235 bits (599), Expect = 1.09e-77
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFK 60
           MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFK
Sbjct: 1   MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFK 60

Query: 61  QECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE 114
           QECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE
Sbjct: 61  QECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE 114

[Close]
BLAST of MC06g0873 vs. NCBI nr
Match: XP_004144070.1 (uncharacterized protein LOC101217749 [Cucumis sativus] >KGN66356.1 hypothetical protein Csa_006876 [Cucumis sativus])

HSP 1 Score: 185 bits (469), Expect = 7.90e-58
Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 0 

Query: 1   MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFK 60
           MRFWMCKIHCPSSFCLCQP+P I +TGS+PL LENS HLPSEVE+VIGTSVSIV+T E K
Sbjct: 1   MRFWMCKIHCPSSFCLCQPAPHIYSTGSIPLDLENSSHLPSEVESVIGTSVSIVETLESK 60

Query: 61  QECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE 114
           QECRD   DK QE EYGIKSSLRK+SL+ G  + KH K+VQWMDFSGKELVEIREFE
Sbjct: 61  QECRDESGDKVQENEYGIKSSLRKSSLRSGVSKEKHVKRVQWMDFSGKELVEIREFE 117

[Close]
BLAST of MC06g0873 vs. NCBI nr
Match: KAA0055721.1 (uncharacterized protein E6C27_scaffold181G001040 [Cucumis melo var. makuwa] >TYK09971.1 uncharacterized protein E5676_scaffold16G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 181 bits (460), Expect = 9.79e-57
Identity = 91/117 (77.78%), Postives = 99/117 (84.62%), Query Frame = 0 

Query: 1   MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFK 60
           MRFWMCKIHCPSSFCLCQP+P I +TGS+PL LENS HLPSEVE+VIGTS SIV+T E K
Sbjct: 1   MRFWMCKIHCPSSFCLCQPAPHIYSTGSIPLDLENSSHLPSEVESVIGTSGSIVETLESK 60

Query: 61  QECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE 114
           QECRD   DK QE EYGIKSSLRK SL+ G  + KH K+VQWMDFSGKELVEIREFE
Sbjct: 61  QECRDESDDKVQENEYGIKSSLRKPSLRSGVSKEKHVKRVQWMDFSGKELVEIREFE 117

[Close]
BLAST of MC06g0873 vs. NCBI nr
Match: XP_016901000.1 (PREDICTED: uncharacterized protein LOC103492420 [Cucumis melo])

HSP 1 Score: 181 bits (460), Expect = 1.86e-56
Identity = 91/117 (77.78%), Postives = 99/117 (84.62%), Query Frame = 0 

Query: 1   MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFK 60
           MRFWMCKIHCPSSFCLCQP+P I +TGS+PL LENS HLPSEVE+VIGTS SIV+T E K
Sbjct: 1   MRFWMCKIHCPSSFCLCQPAPHIYSTGSIPLDLENSSHLPSEVESVIGTSGSIVETLESK 60

Query: 61  QECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE 114
           QECRD   DK QE EYGIKSSLRK SL+ G  + KH K+VQWMDFSGKELVEIREFE
Sbjct: 61  QECRDESDDKVQENEYGIKSSLRKPSLRSGVSKEKHVKRVQWMDFSGKELVEIREFE 117

[Close]
BLAST of MC06g0873 vs. NCBI nr
Match: XP_038879679.1 (uncharacterized protein LOC120071456 [Benincasa hispida])

HSP 1 Score: 176 bits (446), Expect = 2.01e-54
Identity = 88/114 (77.19%), Postives = 96/114 (84.21%), Query Frame = 0 

Query: 1   MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFK 60
           MRFWMCKIHCPSSFCLCQPSP I +TGSVPL LENSPHLPSEV++VIG S SIV+TFE K
Sbjct: 1   MRFWMCKIHCPSSFCLCQPSPHIYSTGSVPLDLENSPHLPSEVDSVIGISDSIVETFESK 60

Query: 61  QECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE 114
           QECRDDKE      IKSSL+K SL+   P+ KH K+VQWMDFSGKELVEIREFE
Sbjct: 61  QECRDDKESV----IKSSLKKPSLRSAIPKEKHVKRVQWMDFSGKELVEIREFE 110

[Close]
BLAST of MC06g0873 vs. ExPASy TrEMBL
Match: A0A6J1D1Z7 (uncharacterized protein LOC111016556 OS=Momordica charantia OX=3673 GN=LOC111016556 PE=4 SV=1)

HSP 1 Score: 235 bits (599), Expect = 5.26e-78
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFK 60
           MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFK
Sbjct: 1   MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFK 60

Query: 61  QECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE 114
           QECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE
Sbjct: 61  QECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE 114

[Close]
BLAST of MC06g0873 vs. ExPASy TrEMBL
Match: A0A0A0M2C9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599500 PE=4 SV=1)

HSP 1 Score: 185 bits (469), Expect = 3.82e-58
Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 0 

Query: 1   MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFK 60
           MRFWMCKIHCPSSFCLCQP+P I +TGS+PL LENS HLPSEVE+VIGTSVSIV+T E K
Sbjct: 1   MRFWMCKIHCPSSFCLCQPAPHIYSTGSIPLDLENSSHLPSEVESVIGTSVSIVETLESK 60

Query: 61  QECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE 114
           QECRD   DK QE EYGIKSSLRK+SL+ G  + KH K+VQWMDFSGKELVEIREFE
Sbjct: 61  QECRDESGDKVQENEYGIKSSLRKSSLRSGVSKEKHVKRVQWMDFSGKELVEIREFE 117

[Close]
BLAST of MC06g0873 vs. ExPASy TrEMBL
Match: A0A5D3CDR2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001000 PE=4 SV=1)

HSP 1 Score: 181 bits (460), Expect = 4.74e-57
Identity = 91/117 (77.78%), Postives = 99/117 (84.62%), Query Frame = 0 

Query: 1   MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFK 60
           MRFWMCKIHCPSSFCLCQP+P I +TGS+PL LENS HLPSEVE+VIGTS SIV+T E K
Sbjct: 1   MRFWMCKIHCPSSFCLCQPAPHIYSTGSIPLDLENSSHLPSEVESVIGTSGSIVETLESK 60

Query: 61  QECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE 114
           QECRD   DK QE EYGIKSSLRK SL+ G  + KH K+VQWMDFSGKELVEIREFE
Sbjct: 61  QECRDESDDKVQENEYGIKSSLRKPSLRSGVSKEKHVKRVQWMDFSGKELVEIREFE 117

[Close]
BLAST of MC06g0873 vs. ExPASy TrEMBL
Match: A0A1S4DZ54 (uncharacterized protein LOC103492420 OS=Cucumis melo OX=3656 GN=LOC103492420 PE=4 SV=1)

HSP 1 Score: 181 bits (460), Expect = 8.99e-57
Identity = 91/117 (77.78%), Postives = 99/117 (84.62%), Query Frame = 0 

Query: 1   MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFK 60
           MRFWMCKIHCPSSFCLCQP+P I +TGS+PL LENS HLPSEVE+VIGTS SIV+T E K
Sbjct: 1   MRFWMCKIHCPSSFCLCQPAPHIYSTGSIPLDLENSSHLPSEVESVIGTSGSIVETLESK 60

Query: 61  QECRD---DKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE 114
           QECRD   DK QE EYGIKSSLRK SL+ G  + KH K+VQWMDFSGKELVEIREFE
Sbjct: 61  QECRDESDDKVQENEYGIKSSLRKPSLRSGVSKEKHVKRVQWMDFSGKELVEIREFE 117

[Close]
BLAST of MC06g0873 vs. ExPASy TrEMBL
Match: A0A6J1HTN7 (uncharacterized protein LOC111467718 OS=Cucurbita maxima OX=3661 GN=LOC111467718 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 7.34e-43
Identity = 76/114 (66.67%), Postives = 85/114 (74.56%), Query Frame = 0 

Query: 1   MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFK 60
           MRFWMCKIHCPSS CLCQPSP I++TGSV L L+NSPHLPS    VIGTS S V+T E K
Sbjct: 1   MRFWMCKIHCPSSLCLCQPSPHIHSTGSVSLDLQNSPHLPSRDVPVIGTSGSSVETLEPK 60

Query: 61  QECRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE 114
           +    DK  E E+G KSSLRK + + G  + KH K VQWMDFSGKEL EIREFE
Sbjct: 61  R----DKVPESEFGNKSSLRKLNSRSGVSKEKHVKTVQWMDFSGKELAEIREFE 110

[Close]
BLAST of MC06g0873 vs. TAIR 10
Match: AT3G13480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 9.1e-14
Identity = 53/142 (37.32%), Postives = 68/142 (47.89%), Query Frame = 0 

Query: 1   MRFWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENS-----------------------P 60
           MR  +CKI CPS  C C+PSP I  +GS  LKLEN+                        
Sbjct: 13  MRVLLCKIQCPSFICFCKPSPHIYASGS--LKLENTFPQVSSSTTVVDDRDHDDNDDDDA 72

Query: 61  HLPSE---VEAVIGTSVSIVDTFEFKQECRDDKEQEPEYG--IKSSLRKTSLKLGAPEGK 115
           H+  E   V+ V G    +V   +   E + ++E+    G  +KSSL+K  L       K
Sbjct: 73  HVEEEEVVVDHVDGLLTEVVREEDCALEGKKEEEESLSNGEILKSSLKKEVLDSADGGRK 132

[Close]
BLAST of MC06g0873 vs. TAIR 10
Match: AT1G55475.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05
Identity = 27/55 (49.09%), Postives = 32/55 (58.18%), Query Frame = 0 

Query: 65  DDKEQEPE-----YGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFE 115
           D KE+E +       +KSSLRK        E +  KKVQW+D  GKEL EIREFE
Sbjct: 46  DAKEEEGQIVGDTLTLKSSLRKVDSNSTEAEKREKKKVQWVDVIGKELAEIREFE 100

The following BLAST results are available for this feature:
BLAST of MC06g0873 vs.
Match NameE-valueIdentityDescription
BLAST of MC06g0873 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022147688.11.09e-77100.00uncharacterized protein LOC111016556 [Momordica charantia][more]
XP_004144070.17.90e-5878.63uncharacterized protein LOC101217749 [Cucumis sativus] >KGN66356.1 hypothetical ... [more]
KAA0055721.19.79e-5777.78uncharacterized protein E6C27_scaffold181G001040 [Cucumis melo var. makuwa] >TYK... [more]
XP_016901000.11.86e-5677.78PREDICTED: uncharacterized protein LOC103492420 [Cucumis melo][more]
XP_038879679.12.01e-5477.19uncharacterized protein LOC120071456 [Benincasa hispida][more]
BLAST of MC06g0873 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D1Z75.26e-78100.00uncharacterized protein LOC111016556 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A0A0M2C93.82e-5878.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599500 PE=4 SV=1[more]
A0A5D3CDR24.74e-5777.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4DZ548.99e-5777.78uncharacterized protein LOC103492420 OS=Cucumis melo OX=3656 GN=LOC103492420 PE=... [more]
A0A6J1HTN77.34e-4366.67uncharacterized protein LOC111467718 OS=Cucurbita maxima OX=3661 GN=LOC111467718... [more]
BLAST of MC06g0873 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G13480.19.1e-1437.32unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G55475.12.0e-0549.09unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33401LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTICcoord: 1..114
NoneNo IPR availablePANTHERPTHR33401:SF19EXPRESSED PROTEINcoord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g0873.1MC06g0873.1mRNA