MC06g0790 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g0790
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description30S ribosomal protein S16
LocationMC06: 6596605 .. 6599196 (-)
RNA-Seq ExpressionMC06g0790
SyntenyMC06g0790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGCCGTTTAATATTGGGCCTAAACCCGGTTCGGTTCATTAGAGATCCGAATGTGAAAATGATAGGGAACCCGGAGCCCTAGCGGAGGCGCGACTTCTGTTCTCTAATCCGGTGTCTTTTTTTCCAGTTTGGCGGATATCCAAGTTTTTTGCAGGGTTTTACGAGCTCGAAAATGGTGGTGAGGCTTCGATTGTCGAGGTTTGGCTGCAAGAACAAGCCATTTTACCGGGTAATGGCTGCCGATAGCCGATCTCCAAGGGACGGCAAGCATCTCGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTTAATTTCTCTCTCTTTTTTTTTTTGGTTCGTTTATTCGGGAAATGTGTTTGATTGCTCCTGCTAGTTCTCATGGACGACTTCAGATTCCTGAATCGCGAAACATTCTTTTTCTTTCTCCCTTGATATTCGAGTAATTTTTTTCAGGTCAAGATGGCGGTAAACGAATGGGTCTTAATTTTGAAAGGGTGAAGTAAGTGGTTCCTTTTGAATTGTAGCTTGCTTCATGCTATAGTGTTTATGGTTTATGAATTTAAGTGCTGCATTGCAATTGTGAATACAACTTTACTTATTGGTCATTGTGGAATACTCTCTCCTTATTGCTTTTTCGATCTACTTTTACAACAAATTTTTCAATTTCTGGCACTTTCTACACATTTCTTAGAGTGTTAATAAGATAATTCTCGTTCTCATTTAGTTTTTGTTTTGGGGTGTTTCAGTTGATATCAAATTAGGTAACCATCTGAGGCTAATATGGCTTCGAATGATTCTATACCTATGGTTATATAGAGAAATACTAAATGGTTAAATCTAGCCTAGTCTAACAGTATAAGCTTTTTAATTAGTATTAATAAACTAAAAGAAGTAGTTAAAACTTCTGGGTCTAGTGGTTGATCATTTTCTATTCCATTTCATATTTATGGTTCGCGTTACATATTGTGAATTGAATTAGTATTTGCGCTACACGAGTTGAAAATGTTGAGAAATATTAAATTTTTAAAAATTTATCATAGTTTGACAATCTAAGATAAATAACTTAAGTTTTATGCCAAAGCGAGCATAGCTCAGTGGTAATTGACATGTATCTTCAACCATGAGATTGTGAGTTCTATCTCCCACCCCCACATGTTATATTCAATAACTTGAGCTTTTGAGTGGGTGGTGAGTTAGTAGGTCAGTTGTCCAAGAAGTTATTATATTTTCTTGTGGCGGTAAAGAATGAAAAAAACTGGTGGTTCCTTTCTACTCGTTCACATTTGAAACTTTCATATTGTAAGCTGGAGTCTTGTTAGGAGGAAACTTAGATTATCGACCATCTTTTTATTCATGTCCTTTTGCCACTAAAAAAAAAGAAAAAGAAAAAAATGAAGTTTCGCGAGGAATTGACATTATGGTACTGCCACCTGCTTGTCAAAAAGTAGCTCAGGAGTCGATTTTCTGATAAACAAAAAGGAAACGAGAATTGTGTGTTCATGGAGTGTATCAGCAAATTAGAATCCAAAATTCCATTAACCAAGAACTGGGCAGTGACTTGATGTAGACAATGAGAAAATCCTGACTTTCTAGAGCAACTATGCATCTGATTAACTAAACTGCTCCTCTGGAATGTAGAATCTTAAGTTTGCTATCTTTTTCATTTCTTATTTCAAGTTCTATTTAATAACTAGTAGGCAACTAAGAGGATAAATCTTTAATGATGAATCATTATCTTGGAAGATCATTCCTATTATACAAAGGTCTCGTGCAATGCATCAAAGTAAACACATCATGTATAAGTTTGAAGCATTTAACGTTTGCTTTCTAGCCTTTTTGTGGCTTACTTGGAGTGTATGAAGTTTTAAAATTCCCACAATTCCTTGACGTTCCGCTCTTTTGTGTTTTGTGGTTGTTGAATTGCTTTCTTGAAGATCCACTTTAAGTGGTTCAAGCATCGATTATCACTGCGTTTCACATGCGACATTTCTTTTTTGTTACTGTTCTGTGTCTCCATTTTAAACTCATCAGGCATGATAACCCCTTCACTTTCATAGTAACCATTCACTCTCTCCCTTCTAGGTATTGGCTTTCAGTTGGAGCTCAGCCCTCAGAACCTGTGCAGCGTATTCTCTTTAGAGCAGGGGTACTTCCACCACCCCCAATGGTCGCAATGGCTCGTAAAGGTGGACCACGTGATACTCGACCCGTCGATCCTCTGAGTGGACGCTTTGTGACTCCAGAGAAGCCAACTGATGATTCCAGTAGCAAAGATGGCAACGCCGATTCATAAAACATTTTTTAAGAAATATGTCTGGAATCTTTTAAGTGAAGTTTCCAACTTTGTCCTGTTCTTCAGGTAATAGAGTTCAATAAATCAGTCCATTTACTTCGATTGTAAGATGAGTGGTTTTTGATGGGGAATAGGAGAGGTAAAGTAGTTTCAGTTCATTGTGGATCATTAAAGATGGAGTCTGTAGATATCATCAATAGCCAATCCCCAGTGCCAAGTATATGGCTGTTGGACTGAGCTACTTAAGTTAAGGTTAGCCATTACTTTTGAGAAAACATTCTCGTATTGTCAAATTCAACA

mRNA sequence

GGGCCGTTTAATATTGGGCCTAAACCCGGTTCGGTTCATTAGAGATCCGAATGTGAAAATGATAGGGAACCCGGAGCCCTAGCGGAGGCGCGACTTCTGTTCTCTAATCCGGTGTCTTTTTTTCCAGTTTGGCGGATATCCAAGTTTTTTGCAGGGTTTTACGAGCTCGAAAATGGTGGTGAGGCTTCGATTGTCGAGGTTTGGCTGCAAGAACAAGCCATTTTACCGGGTAATGGCTGCCGATAGCCGATCTCCAAGGGACGGCAAGCATCTCGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTCAAGATGGCGGTAAACGAATGGGTCTTAATTTTGAAAGGGTGAAGTATTGGCTTTCAGTTGGAGCTCAGCCCTCAGAACCTGTGCAGCGTATTCTCTTTAGAGCAGGGGTACTTCCACCACCCCCAATGGTCGCAATGGCTCGTAAAGGTGGACCACGTGATACTCGACCCGTCGATCCTCTGAGTGGACGCTTTGTGACTCCAGAGAAGCCAACTGATGATTCCAGTAGCAAAGATGGCAACGCCGATTCATAAAACATTTTTTAAGAAATATGTCTGGAATCTTTTAAGTGAAGTTTCCAACTTTGTCCTGTTCTTCAGGTAATAGAGTTCAATAAATCAGTCCATTTACTTCGATTGTAAGATGAGTGGTTTTTGATGGGGAATAGGAGAGGTAAAGTAGTTTCAGTTCATTGTGGATCATTAAAGATGGAGTCTGTAGATATCATCAATAGCCAATCCCCAGTGCCAAGTATATGGCTGTTGGACTGAGCTACTTAAGTTAAGGTTAGCCATTACTTTTGAGAAAACATTCTCGTATTGTCAAATTCAACA

Coding sequence (CDS)

ATGGTGGTGAGGCTTCGATTGTCGAGGTTTGGCTGCAAGAACAAGCCATTTTACCGGGTAATGGCTGCCGATAGCCGATCTCCAAGGGACGGCAAGCATCTCGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTCAAGATGGCGGTAAACGAATGGGTCTTAATTTTGAAAGGGTGAAGTATTGGCTTTCAGTTGGAGCTCAGCCCTCAGAACCTGTGCAGCGTATTCTCTTTAGAGCAGGGGTACTTCCACCACCCCCAATGGTCGCAATGGCTCGTAAAGGTGGACCACGTGATACTCGACCCGTCGATCCTCTGAGTGGACGCTTTGTGACTCCAGAGAAGCCAACTGATGATTCCAGTAGCAAAGATGGCAACGCCGATTCATAA

Protein sequence

MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDSSSKDGNADS
Homology
[Close]
BLAST of MC06g0790 vs. ExPASy Swiss-Prot
Match: Q9LTS6 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS16-2 PE=1 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.4e-54
Identity = 99/132 (75.00%), Postives = 118/132 (89.39%), Query Frame = 0 

Query: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPT--- 120
           YWLSVGAQPS+PVQR+LFR+G+LPPPPMVAM RKGG RDTRPVDP++GR+V  E  T   
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120

Query: 121 DDSSSKDGNADS 130
           +D+  K+ + ++
Sbjct: 121 NDNQPKEEDTEA 132

[Close]
BLAST of MC06g0790 vs. ExPASy Swiss-Prot
Match: O65686 (30S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS16-1 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.3e-31
Identity = 59/112 (52.68%), Postives = 86/112 (76.79%), Query Frame = 0 

Query: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M V++RL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT-RPVDPLSGRFV 112
           YWLSVGAQP++ V+ +LFRAG++PP PMV +  K G + T + V P++G  +
Sbjct: 61  YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITGEIL 112

[Close]
BLAST of MC06g0790 vs. ExPASy Swiss-Prot
Match: Q5LNF2 (30S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=rpsP PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-19
Identity = 44/83 (53.01%), Postives = 63/83 (75.90%), Query Frame = 0 

Query: 1  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
          M +++RL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQ 60

Query: 61 YWLSVGAQPSEPVQRILFRAGVL 84
          YWLS GAQ ++ V R+L  AGV+
Sbjct: 61 YWLSQGAQTTDRVARMLEAAGVV 83

[Close]
BLAST of MC06g0790 vs. ExPASy Swiss-Prot
Match: A5V9P7 (30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) OX=392499 GN=rpsP PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-19
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 0 

Query: 1  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
          M V +RL+R G K +P+YR++ AD+RSPRDG  +E +G YNPL  +D  KR+ L+ +R K
Sbjct: 1  MAVSIRLARGGAKKRPYYRIVVADARSPRDGAFIEKIGAYNPLLAKDDPKRVVLDTDRAK 60

Query: 61 YWLSVGAQPSEPVQRILFRAGV 83
          +WLSVGAQP++ V R L  AGV
Sbjct: 61 HWLSVGAQPTDRVARFLDAAGV 82

[Close]
BLAST of MC06g0790 vs. ExPASy Swiss-Prot
Match: Q16AN8 (30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=rpsP PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.6e-19
Identity = 43/82 (52.44%), Postives = 62/82 (75.61%), Query Frame = 0 

Query: 1  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
          M +++RL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDAERVQ 60

Query: 61 YWLSVGAQPSEPVQRILFRAGV 83
          YWL  GAQP++ V R+L  AG+
Sbjct: 61 YWLGQGAQPTDRVARMLEAAGL 82

[Close]
BLAST of MC06g0790 vs. NCBI nr
Match: XP_022147743.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 266 bits (679), Expect = 1.00e-89
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120
           YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120

Query: 121 SSKDGNADS 129
           SSKDGNADS
Sbjct: 121 SSKDGNADS 129

[Close]
BLAST of MC06g0790 vs. NCBI nr
Match: XP_023516386.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023516387.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256 bits (655), Expect = 4.60e-86
Identity = 124/129 (96.12%), Postives = 127/129 (98.45%), Query Frame = 0 

Query: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120
           YWLSVGAQPSEPVQRILFR+GVLPPPPMVAMARKGGPRDTR VDPLSGR V+PEKPTDDS
Sbjct: 61  YWLSVGAQPSEPVQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTDDS 120

Query: 121 SSKDGNADS 129
           SSKDGNADS
Sbjct: 121 SSKDGNADS 129

[Close]
BLAST of MC06g0790 vs. NCBI nr
Match: XP_038880699.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 254 bits (649), Expect = 3.78e-85
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 0 

Query: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120
           YWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDTR VDPLSGRFVTPEKPTD S
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRLVDPLSGRFVTPEKPTDSS 120

Query: 121 SSKDGNADS 129
           S KDG+ADS
Sbjct: 121 SGKDGDADS 129

[Close]
BLAST of MC06g0790 vs. NCBI nr
Match: KAG7023670.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 253 bits (647), Expect = 7.63e-85
Identity = 122/129 (94.57%), Postives = 127/129 (98.45%), Query Frame = 0 

Query: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120
           YWLSVGAQPSEP+QRILFR+GVLPPPPMVAMARKGGPRDTR VDPLSGR V+PEKPT+DS
Sbjct: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS 120

Query: 121 SSKDGNADS 129
           SSKDGNADS
Sbjct: 121 SSKDGNADS 129

[Close]
BLAST of MC06g0790 vs. NCBI nr
Match: XP_022960937.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita moschata] >XP_022960939.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 251 bits (642), Expect = 4.42e-84
Identity = 121/129 (93.80%), Postives = 126/129 (97.67%), Query Frame = 0 

Query: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120
           YWLSVGAQPSEP+QRILFR+GVLPPPPMVAMARKGGPRDTR VDPLSGR V+PEKPT+DS
Sbjct: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS 120

Query: 121 SSKDGNADS 129
           S KDGNADS
Sbjct: 121 SRKDGNADS 129

[Close]
BLAST of MC06g0790 vs. ExPASy TrEMBL
Match: A0A6J1D251 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016603 PE=3 SV=1)

HSP 1 Score: 266 bits (679), Expect = 4.85e-90
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120
           YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120

Query: 121 SSKDGNADS 129
           SSKDGNADS
Sbjct: 121 SSKDGNADS 129

[Close]
BLAST of MC06g0790 vs. ExPASy TrEMBL
Match: A0A6J1H8S5 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111461591 PE=3 SV=1)

HSP 1 Score: 251 bits (642), Expect = 2.14e-84
Identity = 121/129 (93.80%), Postives = 126/129 (97.67%), Query Frame = 0 

Query: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120
           YWLSVGAQPSEP+QRILFR+GVLPPPPMVAMARKGGPRDTR VDPLSGR V+PEKPT+DS
Sbjct: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS 120

Query: 121 SSKDGNADS 129
           S KDGNADS
Sbjct: 121 SRKDGNADS 129

[Close]
BLAST of MC06g0790 vs. ExPASy TrEMBL
Match: A0A6J1HXD7 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467724 PE=3 SV=1)

HSP 1 Score: 251 bits (642), Expect = 2.21e-84
Identity = 123/130 (94.62%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120
           YWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRF TP+K TDDS
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 -SSKDGNADS 129
            SSKDG+ADS
Sbjct: 121 NSSKDGDADS 130

[Close]
BLAST of MC06g0790 vs. ExPASy TrEMBL
Match: A0A6J1F6D0 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111441226 PE=3 SV=1)

HSP 1 Score: 251 bits (642), Expect = 2.21e-84
Identity = 123/130 (94.62%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120
           YWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRF TP+K TDDS
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 -SSKDGNADS 129
            SSKDGNADS
Sbjct: 121 NSSKDGNADS 130

[Close]
BLAST of MC06g0790 vs. ExPASy TrEMBL
Match: A0A5D3CDW9 (30S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001970 PE=3 SV=1)

HSP 1 Score: 242 bits (618), Expect = 1.01e-80
Identity = 116/130 (89.23%), Postives = 125/130 (96.15%), Query Frame = 0 

Query: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEK-PTDD 120
           YWLSVGAQPS+P+QRILFRAG+LPPPPMVAM RKGGPRDTRPVDPLSGRFVTPEK PTD 
Sbjct: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120

Query: 121 SSSKDGNADS 129
           S+ + G+ADS
Sbjct: 121 SNGEVGDADS 130

[Close]
BLAST of MC06g0790 vs. TAIR 10
Match: AT5G56940.1 (Ribosomal protein S16 family protein )

HSP 1 Score: 212.2 bits (539), Expect = 2.4e-55
Identity = 99/132 (75.00%), Postives = 118/132 (89.39%), Query Frame = 0 

Query: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPT--- 120
           YWLSVGAQPS+PVQR+LFR+G+LPPPPMVAM RKGG RDTRPVDP++GR+V  E  T   
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120

Query: 121 DDSSSKDGNADS 130
           +D+  K+ + ++
Sbjct: 121 NDNQPKEEDTEA 132

[Close]
BLAST of MC06g0790 vs. TAIR 10
Match: AT4G34620.1 (small subunit ribosomal protein 16 )

HSP 1 Score: 135.2 bits (339), Expect = 3.8e-32
Identity = 59/112 (52.68%), Postives = 86/112 (76.79%), Query Frame = 0 

Query: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M V++RL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT-RPVDPLSGRFV 112
           YWLSVGAQP++ V+ +LFRAG++PP PMV +  K G + T + V P++G  +
Sbjct: 61  YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITGEIL 112

[Close]
BLAST of MC06g0790 vs. TAIR 10
Match: ATCG00050.1 (ribosomal protein S16 )

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-08
Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = 0 

Query: 2  VVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKY 61
          +V+LRL R G K +  YR++A D R  R+G+ L  +G+Y+P+  Q       LN   +  
Sbjct: 1  MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQ-----TFLNLSAILD 60

Query: 62 WLSVGAQPSEPVQRILFRAGV 83
          +L  GAQP+     I  +AG+
Sbjct: 61 FLKKGAQPTRTAHDISKKAGI 76

The following BLAST results are available for this feature:
BLAST of MC06g0790 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LTS63.4e-5475.0030S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana... [more]
O656865.3e-3152.6830S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP... [more]
Q5LNF22.1e-1953.0130S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 /... [more]
A5V9P72.7e-1953.6630S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM... [more]
Q16AN83.6e-1952.4430S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh ... [more]
BLAST of MC06g0790 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022147743.11.00e-89100.0030S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia][more]
XP_023516386.14.60e-8696.1230S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo su... [more]
XP_038880699.13.78e-8595.3530S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa h... [more]
KAG7023670.17.63e-8594.5730S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucurbita argyrosperma... [more]
XP_022960937.14.42e-8493.8030S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita moschat... [more]
BLAST of MC06g0790 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D2514.85e-90100.0030S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia ... [more]
A0A6J1H8S52.14e-8493.8030S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita mosch... [more]
A0A6J1HXD72.21e-8494.6230S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxim... [more]
A0A6J1F6D02.21e-8494.6230S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita mosch... [more]
A0A5D3CDW91.01e-8089.2330S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
BLAST of MC06g0790 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G56940.12.4e-5575.00Ribosomal protein S16 family protein [more]
AT4G34620.13.8e-3252.68small subunit ribosomal protein 16 [more]
ATCG00050.12.2e-0835.80ribosomal protein S16 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000307Ribosomal protein S16PFAMPF00886Ribosomal_S16coord: 9..70
e-value: 7.1E-27
score: 93.3
IPR000307Ribosomal protein S16TIGRFAMTIGR00002TIGR00002coord: 3..82
e-value: 2.2E-31
score: 105.7
IPR000307Ribosomal protein S16PANTHERPTHR1291930S RIBOSOMAL PROTEIN S16coord: 1..123
IPR000307Ribosomal protein S16HAMAPMF_00385Ribosomal_S16coord: 2..80
score: 23.590523
IPR023803Ribosomal protein S16 domain superfamilyGENE3D3.30.1320.10coord: 1..109
e-value: 7.8E-46
score: 157.1
IPR023803Ribosomal protein S16 domain superfamilySUPERFAMILY54565Ribosomal protein S16coord: 3..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..129
NoneNo IPR availablePANTHERPTHR12919:SF3030S RIBOSOMAL PROTEIN S16-LIKEcoord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g0790.1MC06g0790.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome