MC06g0702 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0702
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	transmembrane protein 234 homolog
Location	MC06: 5769763 .. 5770116 (-)
RNA-Seq Expression	MC06g0702
Synteny	MC06g0702

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCGGTTGGTCTAGTCTGGGGCGCCACTAACGCTCTGATGCGCCGCGGCGCGCTTCTCTGGGACCAAGCTCTCAATTCTTCCTCCAATGGCTCAAGCTCCTCCCTCCTCCGATGGCTCAAGCTCCTCTCAATTTGGCAGTACACCATCCCCTTTCTGCTTAACCTCTCCGCCTCAGCTACCTTCTTCGCTATTCTAAGCGATGCCCCTATATCCCTCGCCGTGCCCGTCACCAACGCAACCACATTTGCCGCCACCGCCGTCTTTGGAATGCTCCTTGGCGAACAGACTCGCGTCGGGTACGCTCTGTTTGGTACCGCTCTTATTGGTTTGGGCGTTTGGCTTTGCATT

mRNA sequence

ATGGTTGCGGTTGGTCTAGTCTGGGGCGCCACTAACGCTCTGATGCGCCGCGGCGCGCTTCTCTGGGACCAAGCTCTCAATTCTTCCTCCAATGGCTCAAGCTCCTCCCTCCTCCGATGGCTCAAGCTCCTCTCAATTTGGCAGTACACCATCCCCTTTCTGCTTAACCTCTCCGCCTCAGCTACCTTCTTCGCTATTCTAAGCGATGCCCCTATATCCCTCGCCGTGCCCGTCACCAACGCAACCACATTTGCCGCCACCGCCGTCTTTGGAATGCTCCTTGGCGAACAGACTCGCGTCGGGTACGCTCTGTTTGGTACCGCTCTTATTGGTTTGGGCGTTTGGCTTTGCATT

Coding sequence (CDS)

ATGGTTGCGGTTGGTCTAGTCTGGGGCGCCACTAACGCTCTGATGCGCCGCGGCGCGCTTCTCTGGGACCAAGCTCTCAATTCTTCCTCCAATGGCTCAAGCTCCTCCCTCCTCCGATGGCTCAAGCTCCTCTCAATTTGGCAGTACACCATCCCCTTTCTGCTTAACCTCTCCGCCTCAGCTACCTTCTTCGCTATTCTAAGCGATGCCCCTATATCCCTCGCCGTGCCCGTCACCAACGCAACCACATTTGCCGCCACCGCCGTCTTTGGAATGCTCCTTGGCGAACAGACTCGCGTCGGGTACGCTCTGTTTGGTACCGCTCTTATTGGTTTGGGCGTTTGGCTTTGCATT

Protein sequence

MVAVGLVWGATNALMRRGALLWDQALNSSSNGSSSSLLRWLKLLSIWQYTIPFLLNLSASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVGYALFGTALIGLGVWLCI

Homology

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BLAST of MC06g0702 vs. ExPASy Swiss-Prot
Match: Q54ZG7 (Transmembrane protein 234 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0277575 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.3e-11
Identity = 44/118 (37.29%), Postives = 66/118 (55.93%), Query Frame = 0


Query: 1   MVAVGLVWGATNALMRRGALLWDQALNSSSNGSSSSLLRWLKLLSIWQYTIPFLLNLSAS 60
           ++ VG +WG TN L++RG+    +      N  S  +  ++ L +   YTIP L+NLS S
Sbjct: 9   LLLVGFIWGGTNPLIKRGSEGVSKV--KKDNFLSQIIYEFVYLWTRPSYTIPMLINLSGS 68

Query: 61  ATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVGYALFGTALIGLGVWLCI 119
             FF  LS   ISL VP++N+ TF  T++ GMLLGE+     +  G   +  GV +C+
Sbjct: 69  VVFFYTLSKVDISLVVPISNSLTFLFTSLMGMLLGEKVLHFKSYLGMIFVLAGVTICV 124

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BLAST of MC06g0702 vs. ExPASy Swiss-Prot
Match: A0NGI1 (Transmembrane protein 234 homolog OS=Anopheles gambiae OX=7165 GN=AGAP012180 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.8e-08
Identity = 37/117 (31.62%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 1   MVAVGLVWGATNALMRRGALLWDQALNSSSNGSSSSLLRWLKLLSIWQYTIPFLLNLSAS 60
           ++ V ++WGATN  ++RG++ +++    S  G     +R+  L++ WQY +P ++N   S
Sbjct: 20  ILLVAIMWGATNPFIKRGSIGYNELKADSKLGQLWLEVRF--LITRWQYLLPLVINQLGS 79

Query: 61  ATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVGYALFGTALIGLGVWLC 118
             +   L    +SL VP+ N+ TF  TA+   LLGE+        G  L+ LG  +C
Sbjct: 80  IVYVLTLQRTELSLTVPMANSLTFVFTAITARLLGERQSGWKIYCGMTLVILGTVIC 134

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BLAST of MC06g0702 vs. ExPASy Swiss-Prot
Match: Q8R1E7 (Transmembrane protein 234 OS=Mus musculus OX=10090 GN=Tmem234 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.5e-05
Identity = 37/119 (31.09%), Postives = 61/119 (51.26%), Query Frame = 0


Query: 1   MVAVGLVWGATNALMRRGALLWDQALNSSSNGSSSSLLRWLK-LLSIWQYTIPFLLNLSA 60
           +V V  +WG T  L++R +   +Q    +    +  LL+ +K L    +Y +PFLLN S 
Sbjct: 11  LVLVAALWGGTQPLLKRASSGLEQVRERT---WAWQLLQEIKALFGNTEYLMPFLLNQSG 70

Query: 61  SATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVGYALFGTALIGLGVWLCI 119
           S  ++  L+   ++LAVP+ N+     T + G +LGE      A+ G  L   G+ +CI
Sbjct: 71  SLLYYLTLASTDLTLAVPICNSLAIVFTLIVGKVLGEDIGGKEAVAGMVLTITGITVCI 126

[Close]

BLAST of MC06g0702 vs. NCBI nr
Match: XP_038879672.1 (transmembrane protein 234 homolog [Benincasa hispida])

HSP 1 Score: 205 bits (521), Expect = 7.73e-66
Identity = 108/120 (90.00%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 1   MVAVGLVWGATNALMRRGALLWDQALNSSSNGSS--SSLLRWLKLLSIWQYTIPFLLNLS 60
           MVA+GLVWGATNALMRRGALLWDQAL SSSN +   SSL RWLKLLSIWQYT+PFLLNL+
Sbjct: 8   MVAIGLVWGATNALMRRGALLWDQALKSSSNSTKLLSSLRRWLKLLSIWQYTLPFLLNLT 67

Query: 61  ASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVGYALFGTALIGLGVWLCI 118
           ASATFFAILSDAPISLAVP+TNATTFAATAVFGMLLGE TRVGYALFGTALIGLGVWLCI
Sbjct: 68  ASATFFAILSDAPISLAVPITNATTFAATAVFGMLLGEDTRVGYALFGTALIGLGVWLCI 127

[Close]

BLAST of MC06g0702 vs. NCBI nr
Match: XP_022961299.1 (transmembrane protein 234 homolog [Cucurbita moschata] >XP_022961300.1 transmembrane protein 234 homolog [Cucurbita moschata] >XP_022961301.1 transmembrane protein 234 homolog [Cucurbita moschata] >XP_022961303.1 transmembrane protein 234 homolog [Cucurbita moschata])

HSP 1 Score: 202 bits (515), Expect = 7.23e-65
Identity = 107/124 (86.29%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 1   MVAVGLVWGATNALMRRGALLWDQALNSSSNGSSSS------LLRWLKLLSIWQYTIPFL 60
           MVA+G+VWGATNALMRRGALLWDQAL SSSN + SS      L RWLKLLSIWQYT+PFL
Sbjct: 8   MVAIGIVWGATNALMRRGALLWDQALKSSSNATRSSNKLLSSLRRWLKLLSIWQYTVPFL 67

Query: 61  LNLSASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVGYALFGTALIGLGV 118
           +NL+ASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGE+TRVGYALFGTALIGLGV
Sbjct: 68  VNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEETRVGYALFGTALIGLGV 127

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BLAST of MC06g0702 vs. NCBI nr
Match: KAG7023602.1 (Transmembrane protein-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202 bits (515), Expect = 7.23e-65
Identity = 107/124 (86.29%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 1   MVAVGLVWGATNALMRRGALLWDQALNSSSNGSSSS------LLRWLKLLSIWQYTIPFL 60
           MVA+G+VWGATNALMRRGALLWDQAL SSSN + SS      L RWLKLLSIWQYT+PFL
Sbjct: 8   MVAIGIVWGATNALMRRGALLWDQALKSSSNATRSSNKLLSSLRRWLKLLSIWQYTVPFL 67

Query: 61  LNLSASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVGYALFGTALIGLGV 118
           +NL+ASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGE+TRVGYALFGTALIGLGV
Sbjct: 68  VNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEETRVGYALFGTALIGLGV 127

[Close]

BLAST of MC06g0702 vs. NCBI nr
Match: XP_023516356.1 (transmembrane protein 234 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202 bits (514), Expect = 1.03e-64
Identity = 107/124 (86.29%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 1   MVAVGLVWGATNALMRRGALLWDQALNSSSNGSSSS------LLRWLKLLSIWQYTIPFL 60
           MVA+G+VWGATNALMRRGALLWDQAL SSSN + SS      L RWLKLLSIWQYT+PFL
Sbjct: 8   MVAIGMVWGATNALMRRGALLWDQALKSSSNATRSSNKLLSSLRRWLKLLSIWQYTLPFL 67

Query: 61  LNLSASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVGYALFGTALIGLGV 118
           +NL+ASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGE+TRVGYALFGTALIGLGV
Sbjct: 68  VNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEETRVGYALFGTALIGLGV 127

[Close]

BLAST of MC06g0702 vs. NCBI nr
Match: XP_022987899.1 (transmembrane protein 234 homolog [Cucurbita maxima] >XP_022987900.1 transmembrane protein 234 homolog [Cucurbita maxima])

HSP 1 Score: 199 bits (507), Expect = 1.20e-63
Identity = 107/124 (86.29%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 1   MVAVGLVWGATNALMRRGALLWDQALNSSSNG--SSSSLL----RWLKLLSIWQYTIPFL 60
           MVA+G+ WGATNALMRRGALLWDQAL SSSN   SS+ LL    RWLKLLSIWQYT+PFL
Sbjct: 8   MVAIGIAWGATNALMRRGALLWDQALKSSSNATRSSNKLLSSFRRWLKLLSIWQYTVPFL 67

Query: 61  LNLSASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVGYALFGTALIGLGV 118
           +NL+ASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGE+TRVGYALFGTALIGLGV
Sbjct: 68  VNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEETRVGYALFGTALIGLGV 127

[Close]

BLAST of MC06g0702 vs. ExPASy TrEMBL
Match: A0A6J1HBE7 (transmembrane protein 234 homolog OS=Cucurbita moschata OX=3662 GN=LOC111461839 PE=3 SV=1)

HSP 1 Score: 202 bits (515), Expect = 3.50e-65
Identity = 107/124 (86.29%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 1   MVAVGLVWGATNALMRRGALLWDQALNSSSNGSSSS------LLRWLKLLSIWQYTIPFL 60
           MVA+G+VWGATNALMRRGALLWDQAL SSSN + SS      L RWLKLLSIWQYT+PFL
Sbjct: 8   MVAIGIVWGATNALMRRGALLWDQALKSSSNATRSSNKLLSSLRRWLKLLSIWQYTVPFL 67

Query: 61  LNLSASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVGYALFGTALIGLGV 118
           +NL+ASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGE+TRVGYALFGTALIGLGV
Sbjct: 68  VNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEETRVGYALFGTALIGLGV 127

[Close]

BLAST of MC06g0702 vs. ExPASy TrEMBL
Match: A0A6J1JK46 (transmembrane protein 234 homolog OS=Cucurbita maxima OX=3661 GN=LOC111485302 PE=3 SV=1)

HSP 1 Score: 199 bits (507), Expect = 5.81e-64
Identity = 107/124 (86.29%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 1   MVAVGLVWGATNALMRRGALLWDQALNSSSNG--SSSSLL----RWLKLLSIWQYTIPFL 60
           MVA+G+ WGATNALMRRGALLWDQAL SSSN   SS+ LL    RWLKLLSIWQYT+PFL
Sbjct: 8   MVAIGIAWGATNALMRRGALLWDQALKSSSNATRSSNKLLSSFRRWLKLLSIWQYTVPFL 67

Query: 61  LNLSASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVGYALFGTALIGLGV 118
           +NL+ASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGE+TRVGYALFGTALIGLGV
Sbjct: 68  VNLTASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEETRVGYALFGTALIGLGV 127

[Close]

BLAST of MC06g0702 vs. ExPASy TrEMBL
Match: A0A5A7VAD4 (Transmembrane protein 234-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold369G00120 PE=3 SV=1)

HSP 1 Score: 199 bits (505), Expect = 1.03e-63
Identity = 105/120 (87.50%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MVAVGLVWGATNALMRRGALLWDQALNSSSNGSS--SSLLRWLKLLSIWQYTIPFLLNLS 60
           MVA+GLVWGATNALMRRGALLWDQAL SSS+ +   SSL RWLKL SIWQYT+PFLLNL+
Sbjct: 8   MVAIGLVWGATNALMRRGALLWDQALQSSSDSTKPFSSLRRWLKLFSIWQYTLPFLLNLT 67

Query: 61  ASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVGYALFGTALIGLGVWLCI 118
           ASATFFAILSDAPISLAVPVTNATTFAATAVFG+LLGE TRVGYALFGTALIG GVWLCI
Sbjct: 68  ASATFFAILSDAPISLAVPVTNATTFAATAVFGVLLGEDTRVGYALFGTALIGFGVWLCI 127

[Close]

BLAST of MC06g0702 vs. ExPASy TrEMBL
Match: A0A1S4E4M5 (transmembrane protein 234 homolog OS=Cucumis melo OX=3656 GN=LOC103501037 PE=3 SV=1)

HSP 1 Score: 199 bits (505), Expect = 1.42e-63
Identity = 105/120 (87.50%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MVAVGLVWGATNALMRRGALLWDQALNSSSNGSS--SSLLRWLKLLSIWQYTIPFLLNLS 60
           MVA+GLVWGATNALMRRGALLWDQAL SSS+ +   SSL RWLKL SIWQYT+PFLLNL+
Sbjct: 18  MVAIGLVWGATNALMRRGALLWDQALQSSSDSTKPFSSLRRWLKLFSIWQYTLPFLLNLT 77

Query: 61  ASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVGYALFGTALIGLGVWLCI 118
           ASATFFAILSDAPISLAVPVTNATTFAATAVFG+LLGE TRVGYALFGTALIG GVWLCI
Sbjct: 78  ASATFFAILSDAPISLAVPVTNATTFAATAVFGVLLGEDTRVGYALFGTALIGFGVWLCI 137

[Close]

BLAST of MC06g0702 vs. ExPASy TrEMBL
Match: A0A6J1CVC8 (transmembrane protein 234 homolog isoform X4 OS=Momordica charantia OX=3673 GN=LOC111014550 PE=3 SV=1)

HSP 1 Score: 191 bits (485), Expect = 6.46e-61
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MVAVGLVWGATNALMRRGALLWDQALNSSSNGSSSSLLRWLKLLSIWQYTIPFLLNLSAS 60
           MVAVGLVWGATNALMRRGALLWDQALNSSSNGSSSSLLRWLKLLSIWQYTIPFLLNLSAS
Sbjct: 8   MVAVGLVWGATNALMRRGALLWDQALNSSSNGSSSSLLRWLKLLSIWQYTIPFLLNLSAS 67

Query: 61  ATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVGYA 103
           ATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVG A
Sbjct: 68  ATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVGCA 110

[Close]

BLAST of MC06g0702 vs. TAIR 10
Match: AT5G19570.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0546 (InterPro:IPR018908); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-38
Identity = 84/129 (65.12%), Postives = 100/129 (77.52%), Query Frame = 0


Query: 1   MVAVGLVWGATNALMRRGALLWDQALNSSSNGSSS-----------SLLRWLKLLSIWQY 60
           MVAVGLVWGATNAL+RRGAL WD+  +SS+  S S           +L  W+ LL  WQY
Sbjct: 8   MVAVGLVWGATNALIRRGALAWDKTKSSSTTESHSPPLQIRRKIMIALRDWINLLLFWQY 67

Query: 61  TIPFLLNLSASATFFAILSDAPISLAVPVTNATTFAATAVFGMLLGEQTRVGYALFGTAL 119
           +IPFL+NLSASATFFA+LS APISLAVPVTNATTFAATA FG+LLGE+T++G AL GT+ 
Sbjct: 68  SIPFLINLSASATFFALLSHAPISLAVPVTNATTFAATAAFGILLGEETQIGLALLGTSF 127

The following BLAST results are available for this feature:

BLAST of MC06g0702 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54ZG7	3.3e-11	37.29	Transmembrane protein 234 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0...	[more]
A0NGI1	5.8e-08	31.62	Transmembrane protein 234 homolog OS=Anopheles gambiae OX=7165 GN=AGAP012180 PE=...	[more]
Q8R1E7	3.5e-05	31.09	Transmembrane protein 234 OS=Mus musculus OX=10090 GN=Tmem234 PE=1 SV=1	[more]

BLAST of MC06g0702 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879672.1	7.73e-66	90.00	transmembrane protein 234 homolog [Benincasa hispida]	[more]
XP_022961299.1	7.23e-65	86.29	transmembrane protein 234 homolog [Cucurbita moschata] >XP_022961300.1 transmemb...	[more]
KAG7023602.1	7.23e-65	86.29	Transmembrane protein-like protein, partial [Cucurbita argyrosperma subsp. argyr...	[more]
XP_023516356.1	1.03e-64	86.29	transmembrane protein 234 homolog isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022987899.1	1.20e-63	86.29	transmembrane protein 234 homolog [Cucurbita maxima] >XP_022987900.1 transmembra...	[more]

BLAST of MC06g0702 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HBE7	3.50e-65	86.29	transmembrane protein 234 homolog OS=Cucurbita moschata OX=3662 GN=LOC111461839 ...	[more]
A0A6J1JK46	5.81e-64	86.29	transmembrane protein 234 homolog OS=Cucurbita maxima OX=3661 GN=LOC111485302 PE...	[more]
A0A5A7VAD4	1.03e-63	87.50	Transmembrane protein 234-like protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S4E4M5	1.42e-63	87.50	transmembrane protein 234 homolog OS=Cucumis melo OX=3656 GN=LOC103501037 PE=3 S...	[more]
A0A6J1CVC8	6.46e-61	99.03	transmembrane protein 234 homolog isoform X4 OS=Momordica charantia OX=3673 GN=L...	[more]

BLAST of MC06g0702 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19570.1	1.1e-38	65.12	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.3730.20		coord: 14..118 e-value: 5.4E-6 score: 28.6
IPR018908	Putative transmembrane family 234	PFAM	PF10639	TMEM234	coord: 1..118 e-value: 1.8E-27 score: 95.6
IPR018908	Putative transmembrane family 234	PANTHER	PTHR28668	TRANSMEMBRANE PROTEIN 234	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0702.1	MC06g0702.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane