MC06g0668 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0668
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	serine-rich protein-related
Location	MC06: 5526117 .. 5526350 (+)
RNA-Seq Expression	MC06g0668
Synteny	MC06g0668

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TACCCACATGATTTGCAGCCTCACCTGGTAAGCCGGAGGGAGTTGGGTGTCCAATGCAACTGGCTCCTGTTGCAGGCTGCGGCAGTGGCCAGGAGTGGTGATGGTGGCGGCAGGTCGGATAAAAGACAGTGCTTGTGCTCACCGACCGAGCACCCCGGGTCATTTCGTTGCAGACTACACCGCAACGAGTACGTTTGGGTTGGCCGGAATCGGATGGTAAAAAGTGAATCGGCC

mRNA sequence

TACCCACATGATTTGCAGCCTCACCTGGTAAGCCGGAGGGAGTTGGGTGTCCAATGCAACTGGCTCCTGTTGCAGGCTGCGGCAGTGGCCAGGAGTGGTGATGGTGGCGGCAGGTCGGATAAAAGACAGTGCTTGTGCTCACCGACCGAGCACCCCGGGTCATTTCGTTGCAGACTACACCGCAACGAGTACGTTTGGGTTGGCCGGAATCGGATGGTAAAAAGTGAATCGGCC

Coding sequence (CDS)

TACCCACATGATTTGCAGCCTCACCTGGTAAGCCGGAGGGAGTTGGGTGTCCAATGCAACTGGCTCCTGTTGCAGGCTGCGGCAGTGGCCAGGAGTGGTGATGGTGGCGGCAGGTCGGATAAAAGACAGTGCTTGTGCTCACCGACCGAGCACCCCGGGTCATTTCGTTGCAGACTACACCGCAACGAGTACGTTTGGGTTGGCCGGAATCGGATGGTAAAAAGTGAATCGGCC

Protein sequence

YPHDLQPHLVSRRELGVQCNWLLLQAAAVARSGDGGGRSDKRQCLCSPTEHPGSFRCRLHRNEYVWVGRNRMVKSESA

Homology

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BLAST of MC06g0668 vs. NCBI nr
Match: KAG6589902.1 (hypothetical protein SDJN03_15325, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108 bits (270), Expect = 7.84e-29
Identity = 55/79 (69.62%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 1  YPHDLQPHLVSRRE-LGVQCNWLLLQAAAVARSGDGGGRSDKRQCLCSPTEHPGSFRCRL 60
          YPHD+ P    RRE L VQCNW+LLQ AA A    GGG S K++CLCSPT HPGSFRCRL
Sbjct: 3  YPHDVPP----RREFLNVQCNWVLLQTAATAVE-SGGGESVKKRCLCSPTRHPGSFRCRL 62

Query: 61 HRNEYVWVGRNRMVKSESA 78
          HR+EYVWVGR RMVKS  A
Sbjct: 63 HRSEYVWVGRPRMVKSGPA 76

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BLAST of MC06g0668 vs. NCBI nr
Match: KGN65356.1 (hypothetical protein Csa_020011 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.23e-21
Identity = 47/86 (54.65%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  YPHDLQPHLVSRRELG-VQCNWLLLQAA-------AVARSGDGGGRSDKRQCLCSPTEHP 60
          YPH    H +SRR+   +QCNW+L Q         A+   GD    S KR+CLCSPT HP
Sbjct: 3  YPH----HFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGD---ESGKRRCLCSPTRHP 62

Query: 61 GSFRCRLHRNEYVWVGRNRMVKSESA 78
          GSFRCRLHRNEYVWV R R VK+  A
Sbjct: 63 GSFRCRLHRNEYVWVARRRTVKNGPA 81

[Close]

BLAST of MC06g0668 vs. NCBI nr
Match: KAA0046597.1 (hypothetical protein E6C27_scaffold114G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 1.43e-20
Identity = 47/86 (54.65%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  YPHDLQPHLVSRRE-LGVQCNWLLLQA-------AAVARSGDGGGRSDKRQCLCSPTEHP 60
          YPH    H + R + L  QCNW+L Q        AA+   GD    S KR+CLCSPT HP
Sbjct: 3  YPH----HFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGD---ESGKRRCLCSPTTHP 62

Query: 61 GSFRCRLHRNEYVWVGRNRMVKSESA 78
          GSFRCRLHR+EYVWV R R VK+ SA
Sbjct: 63 GSFRCRLHRSEYVWVARRRTVKNVSA 81

[Close]

BLAST of MC06g0668 vs. NCBI nr
Match: KAG7021840.1 (hypothetical protein SDJN02_15568 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.4 bits (189), Expect = 1.26e-15
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 1  YPHDLQPHLVSRREL-GVQCNWLLLQAAAVARSGDGGGRSDKRQCLCSPTEHPG 53
          YPHDL+P LVSRREL GVQ NW+LLQAA+ A S   GG S K +CLCSPT HPG
Sbjct: 3  YPHDLRPWLVSRRELLGVQSNWVLLQAASAAGSSSNGGGSAKVRCLCSPTGHPG 56

[Close]

BLAST of MC06g0668 vs. NCBI nr
Match: KAB5514276.1 (hypothetical protein DKX38_028182 [Salix brachista])

HSP 1 Score: 71.6 bits (174), Expect = 5.00e-14
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 11 SRRELGVQCNWLLLQAAA---------VARSGDGGGRSDKRQCLCSPTEHPGSFRCRLHR 69
          + R L V   WL+LQAA          VA +G  GG    ++CLCSPT HPGSFRCR HR
Sbjct: 9  ASRNLVVYRRWLVLQAAETETEHAPAEVAATGGSGGAGSTKKCLCSPTRHPGSFRCRHHR 68

[Close]

BLAST of MC06g0668 vs. ExPASy TrEMBL
Match: A0A0A0LZG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369510 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.97e-22
Identity = 47/86 (54.65%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  YPHDLQPHLVSRRELG-VQCNWLLLQAA-------AVARSGDGGGRSDKRQCLCSPTEHP 60
          YPH    H +SRR+   +QCNW+L Q         A+   GD    S KR+CLCSPT HP
Sbjct: 3  YPH----HFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGD---ESGKRRCLCSPTRHP 62

Query: 61 GSFRCRLHRNEYVWVGRNRMVKSESA 78
          GSFRCRLHRNEYVWV R R VK+  A
Sbjct: 63 GSFRCRLHRNEYVWVARRRTVKNGPA 81

[Close]

BLAST of MC06g0668 vs. ExPASy TrEMBL
Match: A0A5A7TXE6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001380 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.94e-21
Identity = 47/86 (54.65%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  YPHDLQPHLVSRRE-LGVQCNWLLLQA-------AAVARSGDGGGRSDKRQCLCSPTEHP 60
          YPH    H + R + L  QCNW+L Q        AA+   GD    S KR+CLCSPT HP
Sbjct: 3  YPH----HFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGD---ESGKRRCLCSPTTHP 62

Query: 61 GSFRCRLHRNEYVWVGRNRMVKSESA 78
          GSFRCRLHR+EYVWV R R VK+ SA
Sbjct: 63 GSFRCRLHRSEYVWVARRRTVKNVSA 81

[Close]

BLAST of MC06g0668 vs. ExPASy TrEMBL
Match: A0A5N5J6W7 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_028182 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.42e-14
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 11 SRRELGVQCNWLLLQAAA---------VARSGDGGGRSDKRQCLCSPTEHPGSFRCRLHR 69
          + R L V   WL+LQAA          VA +G  GG    ++CLCSPT HPGSFRCR HR
Sbjct: 9  ASRNLVVYRRWLVLQAAETETEHAPAEVAATGGSGGAGSTKKCLCSPTRHPGSFRCRHHR 68

[Close]

BLAST of MC06g0668 vs. ExPASy TrEMBL
Match: A0A6N2KPX4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113725 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.42e-14
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 11 SRRELGVQCNWLLLQAAA---------VARSGDGGGRSDKRQCLCSPTEHPGSFRCRLHR 69
          + R L V   WL+LQAA          VA +G  GG    ++CLCSPT HPGSFRCR HR
Sbjct: 9  ASRNLVVYRRWLVLQAAETETEHAPAEVAATGGSGGAGSTKKCLCSPTRHPGSFRCRHHR 68

[Close]

BLAST of MC06g0668 vs. ExPASy TrEMBL
Match: A0A5D2PLS8 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A07G007100v1 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.27e-14
Identity = 35/65 (53.85%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 11 SRRELGVQCNWLLLQAAAVAR------SGDGGGRSDKRQCLCSPTEHPGSFRCRLHRNEY 69
          + R LGVQ  WLLL+A   A       + D  G    +QCLCSPT+HPGSFRCR H  EY
Sbjct: 4  AERGLGVQRKWLLLRALMTAPGPRTRVARDTNGVGSMKQCLCSPTKHPGSFRCRHHHAEY 63

[Close]

BLAST of MC06g0668 vs. TAIR 10
Match: AT1G52342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-08
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 24 LQAAAVARS-GDGGGRSDKRQCLCSPTEHPGSFRCRLHRNEYVWVGRNRMVKSESA 79
          ++A A  RS GDGGG   K++C+CSP++HP SF+CR H++EY W+  +    S S+
Sbjct: 31 VEATAGHRSGGDGGG--GKKKCVCSPSKHPRSFKCRYHQHEYQWLPSSSSSSSSSS 84

[Close]

BLAST of MC06g0668 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 47.0 bits (110), Expect = 8.1e-06
Identity = 22/41 (53.66%), Postives = 25/41 (60.98%), Query Frame = 0


Query: 29 VARSGDGGG--------RSDKRQCLCSPTEHPGSFRCRLHR 62
          V R G GGG         S ++ CLC+PT HPGSFRCR HR
Sbjct: 42 VRRGGGGGGGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHR 82

[Close]

BLAST of MC06g0668 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 1.8e-05
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 0


Query: 41 KRQCLCSPTEHPGSFRCRLHRN 63
          K  CLCSPT HPGSFRCR+HR+
Sbjct: 41 KTNCLCSPTTHPGSFRCRIHRS 62

[Close]

BLAST of MC06g0668 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 45.8 bits (107), Expect = 1.8e-05
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 0


Query: 41 KRQCLCSPTEHPGSFRCRLHRN 63
          K  CLCSPT HPGSFRCR+HR+
Sbjct: 41 KTNCLCSPTTHPGSFRCRIHRS 62

[Close]

BLAST of MC06g0668 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 45.8 bits (107), Expect = 1.8e-05
Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 0


Query: 41  KRQCLCSPTEHPGSFRCRLHRN 63
           +R+C+CSPT HPGSFRC LH+N
Sbjct: 123 RRRCMCSPTTHPGSFRCSLHKN 144

The following BLAST results are available for this feature:

BLAST of MC06g0668 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g0668 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589902.1	7.84e-29	69.62	hypothetical protein SDJN03_15325, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN65356.1	1.23e-21	54.65	hypothetical protein Csa_020011 [Cucumis sativus]	[more]
KAA0046597.1	1.43e-20	54.65	hypothetical protein E6C27_scaffold114G001380 [Cucumis melo var. makuwa]	[more]
KAG7021840.1	1.26e-15	70.37	hypothetical protein SDJN02_15568 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAB5514276.1	5.00e-14	51.47	hypothetical protein DKX38_028182 [Salix brachista]	[more]

BLAST of MC06g0668 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZG6	5.97e-22	54.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369510 PE=4 SV=1	[more]
A0A5A7TXE6	6.94e-21	54.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5N5J6W7	2.42e-14	51.47	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_028182 PE=4 SV=1	[more]
A0A6N2KPX4	2.42e-14	51.47	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113725 PE=4 SV=...	[more]
A0A5D2PLS8	6.27e-14	53.85	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A07G007100v1 P...	[more]

BLAST of MC06g0668 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52342.1	1.8e-08	46.43	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13227.1	8.1e-06	53.66	serine-rich protein-related	[more]
AT1G67910.1	1.8e-05	77.27	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	1.8e-05	77.27	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G25280.1	1.8e-05	72.73	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132:SF72	OS01G0778900 PROTEIN	coord: 11..70
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 11..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0668.1	MC06g0668.1	mRNA