MC06g0578 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0578
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Regulator of rDNA transcription protein 15
Location	MC06: 4699894 .. 4700085 (-)
RNA-Seq Expression	MC06g0578
Synteny	MC06g0578

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGGCGTTCCTAGTTCGTCCCCTGGTTGGCACGCGGCGACCCACTCTCACTGCGAGAGGAGCTCGAGCCGACTGGTTCGAAATAGGACGATCGTGTCCAATCCTCAAAGTCAATCCTTTTCAAAAGATTACGGACCTGTTTTGCTGACTTCTCTTACCTACATTGTTCCATCAACCAAAGACTATTCACCT

mRNA sequence

GGAGGCGTTCCTAGTTCGTCCCCTGGTTGGCACGCGGCGACCCACTCTCACTGCGAGAGGAGCTCGAGCCGACTGGTTCGAAATAGGACGATCGTGTCCAATCCTCAAAGTCAATCCTTTTCAAAAGATTACGGACCTGTTTTGCTGACTTCTCTTACCTACATTGTTCCATCAACCAAAGACTATTCACCT

Coding sequence (CDS)

GGAGGCGTTCCTAGTTCGTCCCCTGGTTGGCACGCGGCGACCCACTCTCACTGCGAGAGGAGCTCGAGCCGACTGGTTCGAAATAGGACGATCGTGTCCAATCCTCAAAGTCAATCCTTTTCAAAAGATTACGGACCTGTTTTGCTGACTTCTCTTACCTACATTGTTCCATCAACCAAAGACTATTCACCT

Protein sequence

GGVPSSSPGWHAATHSHCERSSSRLVRNRTIVSNPQSQSFSKDYGPVLLTSLTYIVPSTKDYSP

Homology

[Close]

BLAST of MC06g0578 vs. NCBI nr
Match: PHT25665.1 (hypothetical protein CQW23_34711 [Capsicum baccatum])

HSP 1 Score: 70.5 bits (171), Expect = 8.99e-13
Identity = 41/69 (59.42%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 1   GGVPSSSPGWHAATHSHCERSSSRL-----VRNRTIVSNPQSQSFSKDYGPVLLTSLTYI 60
           G VPS SPGWHAAT S    SSSR       R  T V +PQSQSFS+ YG +L TSL++I
Sbjct: 62  GTVPSPSPGWHAATRSRRGISSSRPPTDDGFRTGTPVPSPQSQSFSQTYGSILPTSLSFI 121

Query: 61  VPSTKDYSP 64
           VPST+D SP
Sbjct: 122 VPSTRDCSP 130

[Close]

BLAST of MC06g0578 vs. NCBI nr
Match: PHT26008.1 (hypothetical protein CQW23_34375 [Capsicum baccatum])

HSP 1 Score: 69.3 bits (168), Expect = 9.77e-13
Identity = 41/69 (59.42%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1   GGVPSSSPGWHAATHSHCERSSSRLVR-----NRTIVSNPQSQSFSKDYGPVLLTSLTYI 60
           G VPS SPG HAAT SHC RSSS           T V +PQSQSFS+ YG +L TSL YI
Sbjct: 40  GTVPSPSPGRHAATRSHCGRSSSSPPTADGFGTGTPVPSPQSQSFSQTYGSILPTSLAYI 99

Query: 61  VPSTKDYSP 64
           VPST+  SP
Sbjct: 100 VPSTRGCSP 108

[Close]

BLAST of MC06g0578 vs. NCBI nr
Match: PHT28089.1 (hypothetical protein CQW23_32313 [Capsicum baccatum])

HSP 1 Score: 69.3 bits (168), Expect = 2.81e-12
Identity = 39/69 (56.52%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 1   GGVPSSSPGWHAATHSHCERSSSRL-----VRNRTIVSNPQSQSFSKDYGPVLLTSLTYI 60
           G +PSSSPGWHAAT+SH   SSS       +   T ++ PQSQSFS+ YG +L TSL YI
Sbjct: 103 GTIPSSSPGWHAATYSHRGSSSSSPPIVDGLGTGTPMTIPQSQSFSQSYGSILPTSLAYI 162

Query: 61  VPSTKDYSP 64
           VPST+  SP
Sbjct: 163 VPSTRGCSP 171

[Close]

BLAST of MC06g0578 vs. NCBI nr
Match: PHT25161.1 (hypothetical protein CQW23_35201 [Capsicum baccatum])

HSP 1 Score: 69.3 bits (168), Expect = 3.12e-12
Identity = 40/69 (57.97%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1   GGVPSSSPGWHAATHSHCERSSSRLVR-----NRTIVSNPQSQSFSKDYGPVLLTSLTYI 60
           G VPSSSPGWHAAT S    SSS           T+V +PQSQSFS+ YG +L TSL YI
Sbjct: 111 GTVPSSSPGWHAATRSRRGSSSSSPPTADGFGTGTLVPSPQSQSFSRSYGSILPTSLAYI 170

Query: 61  VPSTKDYSP 64
           VPST+  SP
Sbjct: 171 VPSTRGCSP 179

[Close]

BLAST of MC06g0578 vs. NCBI nr
Match: PHT25200.1 (Regulator of rDNA transcription protein 15 [Capsicum baccatum])

HSP 1 Score: 68.6 bits (166), Expect = 1.33e-11
Identity = 40/69 (57.97%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   GGVPSSSPGWHAATHSHCERSSSRLVR-----NRTIVSNPQSQSFSKDYGPVLLTSLTYI 60
           G VPS SPG HAAT SHC  SSS           T V +PQSQSFS+ YG +L TSL YI
Sbjct: 187 GTVPSPSPGRHAATRSHCGSSSSSPPTADGFGTGTTVPSPQSQSFSRSYGSILPTSLAYI 246

Query: 61  VPSTKDYSP 64
           VPST+  SP
Sbjct: 247 VPSTRGCSP 255

[Close]

BLAST of MC06g0578 vs. ExPASy TrEMBL
Match: A0A2G2UY37 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_34711 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.35e-13
Identity = 41/69 (59.42%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 1   GGVPSSSPGWHAATHSHCERSSSRL-----VRNRTIVSNPQSQSFSKDYGPVLLTSLTYI 60
           G VPS SPGWHAAT S    SSSR       R  T V +PQSQSFS+ YG +L TSL++I
Sbjct: 62  GTVPSPSPGWHAATRSRRGISSSRPPTDDGFRTGTPVPSPQSQSFSQTYGSILPTSLSFI 121

Query: 61  VPSTKDYSP 64
           VPST+D SP
Sbjct: 122 VPSTRDCSP 130

[Close]

BLAST of MC06g0578 vs. ExPASy TrEMBL
Match: A0A2G2UZF0 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_34375 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.73e-13
Identity = 41/69 (59.42%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1   GGVPSSSPGWHAATHSHCERSSSRLVR-----NRTIVSNPQSQSFSKDYGPVLLTSLTYI 60
           G VPS SPG HAAT SHC RSSS           T V +PQSQSFS+ YG +L TSL YI
Sbjct: 40  GTVPSPSPGRHAATRSHCGRSSSSPPTADGFGTGTPVPSPQSQSFSQTYGSILPTSLAYI 99

Query: 61  VPSTKDYSP 64
           VPST+  SP
Sbjct: 100 VPSTRGCSP 108

[Close]

BLAST of MC06g0578 vs. ExPASy TrEMBL
Match: A0A2G2V566 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_32313 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.36e-12
Identity = 39/69 (56.52%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 1   GGVPSSSPGWHAATHSHCERSSSRL-----VRNRTIVSNPQSQSFSKDYGPVLLTSLTYI 60
           G +PSSSPGWHAAT+SH   SSS       +   T ++ PQSQSFS+ YG +L TSL YI
Sbjct: 103 GTIPSSSPGWHAATYSHRGSSSSSPPIVDGLGTGTPMTIPQSQSFSQSYGSILPTSLAYI 162

Query: 61  VPSTKDYSP 64
           VPST+  SP
Sbjct: 163 VPSTRGCSP 171

[Close]

BLAST of MC06g0578 vs. ExPASy TrEMBL
Match: A0A2G2UWM3 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_35201 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.51e-12
Identity = 40/69 (57.97%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1   GGVPSSSPGWHAATHSHCERSSSRLVR-----NRTIVSNPQSQSFSKDYGPVLLTSLTYI 60
           G VPSSSPGWHAAT S    SSS           T+V +PQSQSFS+ YG +L TSL YI
Sbjct: 111 GTVPSSSPGWHAATRSRRGSSSSSPPTADGFGTGTLVPSPQSQSFSRSYGSILPTSLAYI 170

Query: 61  VPSTKDYSP 64
           VPST+  SP
Sbjct: 171 VPSTRGCSP 179

[Close]

BLAST of MC06g0578 vs. ExPASy TrEMBL
Match: A0A2G2UWT0 (Regulator of rDNA transcription protein 15 OS=Capsicum baccatum OX=33114 GN=CQW23_35164 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.46e-12
Identity = 40/69 (57.97%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   GGVPSSSPGWHAATHSHCERSSSRLVR-----NRTIVSNPQSQSFSKDYGPVLLTSLTYI 60
           G VPS SPG HAAT SHC  SSS           T V +PQSQSFS+ YG +L TSL YI
Sbjct: 187 GTVPSPSPGRHAATRSHCGSSSSSPPTADGFGTGTTVPSPQSQSFSRSYGSILPTSLAYI 246

Query: 61  VPSTKDYSP 64
           VPST+  SP
Sbjct: 247 VPSTRGCSP 255

The following BLAST results are available for this feature:

BLAST of MC06g0578 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g0578 vs. NCBI nr


Match Name	E-value	Identity	Description
PHT25665.1	8.99e-13	59.42	hypothetical protein CQW23_34711 [Capsicum baccatum]	[more]
PHT26008.1	9.77e-13	59.42	hypothetical protein CQW23_34375 [Capsicum baccatum]	[more]
PHT28089.1	2.81e-12	56.52	hypothetical protein CQW23_32313 [Capsicum baccatum]	[more]
PHT25161.1	3.12e-12	57.97	hypothetical protein CQW23_35201 [Capsicum baccatum]	[more]
PHT25200.1	1.33e-11	57.97	Regulator of rDNA transcription protein 15 [Capsicum baccatum]	[more]

BLAST of MC06g0578 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G2UY37	4.35e-13	59.42	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_34711 PE=4 SV=1	[more]
A0A2G2UZF0	4.73e-13	59.42	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_34375 PE=4 SV=1	[more]
A0A2G2V566	1.36e-12	56.52	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_32313 PE=4 SV=1	[more]
A0A2G2UWM3	1.51e-12	57.97	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_35201 PE=4 SV=1	[more]
A0A2G2UWT0	6.46e-12	57.97	Regulator of rDNA transcription protein 15 OS=Capsicum baccatum OX=33114 GN=CQW2...	[more]

BLAST of MC06g0578 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0578.1	MC06g0578.1	mRNA