MC06g0563 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0563
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC06: 4576679 .. 4577011 (+)
RNA-Seq Expression	MC06g0563
Synteny	MC06g0563

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGGTGACGAAGTTACCTCTTCTGTTACTTGCCTGTATAGCAATTTTAGCACCATTGGCGACGGCTCACGCGGCGGCTGCGGCGGCGCCGAGGGCTGGGGAGGAGTCCGATGCGTTCCTAACAGAGAAGTTCTCTTTCATCCGCTGCGTATCGTTCCTCTCCGAGTCGACGAAATGTGTGATAGATGTGATTGTGAATGGTGGTGCTCCTCACCGTTCTTGCTGCAACGCCATTTCTAAGCTCAACGACTGCTCCTCATTTCTTCTCAAAGGCATTTCCTCCGCAGAAATGAGTTTGATTAAGAACGATTGCGCTTCCTGGGGTATTACAATT

mRNA sequence

TCGGTGACGAAGTTACCTCTTCTGTTACTTGCCTGTATAGCAATTTTAGCACCATTGGCGACGGCTCACGCGGCGGCTGCGGCGGCGCCGAGGGCTGGGGAGGAGTCCGATGCGTTCCTAACAGAGAAGTTCTCTTTCATCCGCTGCGTATCGTTCCTCTCCGAGTCGACGAAATGTGTGATAGATGTGATTGTGAATGGTGGTGCTCCTCACCGTTCTTGCTGCAACGCCATTTCTAAGCTCAACGACTGCTCCTCATTTCTTCTCAAAGGCATTTCCTCCGCAGAAATGAGTTTGATTAAGAACGATTGCGCTTCCTGGGGTATTACAATT

Coding sequence (CDS)

TCGGTGACGAAGTTACCTCTTCTGTTACTTGCCTGTATAGCAATTTTAGCACCATTGGCGACGGCTCACGCGGCGGCTGCGGCGGCGCCGAGGGCTGGGGAGGAGTCCGATGCGTTCCTAACAGAGAAGTTCTCTTTCATCCGCTGCGTATCGTTCCTCTCCGAGTCGACGAAATGTGTGATAGATGTGATTGTGAATGGTGGTGCTCCTCACCGTTCTTGCTGCAACGCCATTTCTAAGCTCAACGACTGCTCCTCATTTCTTCTCAAAGGCATTTCCTCCGCAGAAATGAGTTTGATTAAGAACGATTGCGCTTCCTGGGGTATTACAATT

Protein sequence

SVTKLPLLLLACIAILAPLATAHAAAAAAPRAGEESDAFLTEKFSFIRCVSFLSESTKCVIDVIVNGGAPHRSCCNAISKLNDCSSFLLKGISSAEMSLIKNDCASWGITI

Homology

[Close]

BLAST of MC06g0563 vs. NCBI nr
Match: KAA0050078.1 (hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (276), Expect = 5.74e-29
Identity = 61/106 (57.55%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 4   KLPLLLLACIAILAPLATAHAAAAAAPRAGEESDAFLTEKFSFIRCVSFLSESTKCVIDV 63
           KLPL+   C+AILA    AH  AAA       SD F  EK S + C SF+SE+TKCVIDV
Sbjct: 5   KLPLVFFVCMAILAVSGIAHTGAAA------PSDPFTAEKLSLLGCTSFISEATKCVIDV 64

Query: 64  IVNGGAPHRSCCNAISKLNDCSSFLLKGISSAEMSLIKNDCASWGI 109
           + N  APH SCC A SKLNDCS   LKGI SA+M LIK  CA WG+
Sbjct: 65  MKNAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of MC06g0563 vs. NCBI nr
Match: KAE8653021.1 (hypothetical protein Csa_004567 [Cucumis sativus])

HSP 1 Score: 109 bits (273), Expect = 1.64e-28
Identity = 59/106 (55.66%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 4   KLPLLLLACIAILAPLATAHAAAAAAPRAGEESDAFLTEKFSFIRCVSFLSESTKCVIDV 63
           KLPL+ L CIAILA    AH  A A       +D F  E+FS + C SF+SE+T C++DV
Sbjct: 5   KLPLVFLVCIAILAVSGMAHTGALA------PADPFTAEEFSLLGCTSFISEATNCMVDV 64

Query: 64  IVNGGAPHRSCCNAISKLNDCSSFLLKGISSAEMSLIKNDCASWGI 109
           + N  APH SCC A SKLNDCSS  LKGI SA+M LIK  CA WG+
Sbjct: 65  MKNAVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of MC06g0563 vs. NCBI nr
Match: TYK10330.1 (hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 2.33e-28
Identity = 60/106 (56.60%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 4   KLPLLLLACIAILAPLATAHAAAAAAPRAGEESDAFLTEKFSFIRCVSFLSESTKCVIDV 63
           KLPL+   C+AILA    AH  AAA       SD F  E+ S + C SF+SE+TKCVIDV
Sbjct: 5   KLPLVFFVCMAILAVSGIAHTGAAA------PSDPFTAEELSLLGCTSFISEATKCVIDV 64

Query: 64  IVNGGAPHRSCCNAISKLNDCSSFLLKGISSAEMSLIKNDCASWGI 109
           + N  APH SCC A SKLNDCS   LKGI SA+M LIK  CA WG+
Sbjct: 65  MKNAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of MC06g0563 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (265), Expect = 3.11e-27
Identity = 60/113 (53.10%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   SVTKLPLLLLACIAILAPLATAHAA--AAAAPRAGEESDAFLTEKFSFIRCVSFLSESTK 60
           ++TKLPL+LL CIAILA   TA     AAA P          +E FS   C+SF+ ++TK
Sbjct: 5   AITKLPLVLLVCIAILASSVTARPTIVAAATPT---------SEDFSLFPCISFVPKATK 64

Query: 61  CVIDVIVNGGAPHRSCCNAISKLNDCSSFLLKGISSAEMSLIKNDCASWGITI 111
           CVIDV+ N  APH SCC AIS+L+DCSS  LK I S++M L+K+ CASWG++I
Sbjct: 65  CVIDVLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSI 108

[Close]

BLAST of MC06g0563 vs. NCBI nr
Match: KAA0050079.1 (hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (250), Expect = 5.90e-25
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 1   SVTKLPLLLLACIAILAPLATA--HAAAAAAPRAGEESDAFLTEKFSFIRCVSFLSESTK 60
           ++TKLPL+L  CIAILA   TA     AAA P          +E FS   C+SF+ ++TK
Sbjct: 5   AITKLPLVLRVCIAILASSVTACPTIVAAATPT---------SEDFSLFPCISFVPKATK 64

Query: 61  CVIDVIVNGGAPHRSCCNAISKLNDCSSFLLKGISSAEMSLIKNDCASWGITI 111
           CVIDV+ N  APH SCC AI++L+DCSS  LK I S +M L+K+ CASWG++I
Sbjct: 65  CVIDVLKNVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSI 108

[Close]

BLAST of MC06g0563 vs. ExPASy TrEMBL
Match: A0A5A7U483 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00620 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 2.78e-29
Identity = 61/106 (57.55%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 4   KLPLLLLACIAILAPLATAHAAAAAAPRAGEESDAFLTEKFSFIRCVSFLSESTKCVIDV 63
           KLPL+   C+AILA    AH  AAA       SD F  EK S + C SF+SE+TKCVIDV
Sbjct: 5   KLPLVFFVCMAILAVSGIAHTGAAA------PSDPFTAEKLSLLGCTSFISEATKCVIDV 64

Query: 64  IVNGGAPHRSCCNAISKLNDCSSFLLKGISSAEMSLIKNDCASWGI 109
           + N  APH SCC A SKLNDCS   LKGI SA+M LIK  CA WG+
Sbjct: 65  MKNAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of MC06g0563 vs. ExPASy TrEMBL
Match: A0A5D3CG41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00010 PE=4 SV=1)

HSP 1 Score: 109 bits (272), Expect = 1.13e-28
Identity = 60/106 (56.60%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 4   KLPLLLLACIAILAPLATAHAAAAAAPRAGEESDAFLTEKFSFIRCVSFLSESTKCVIDV 63
           KLPL+   C+AILA    AH  AAA       SD F  E+ S + C SF+SE+TKCVIDV
Sbjct: 5   KLPLVFFVCMAILAVSGIAHTGAAA------PSDPFTAEELSLLGCTSFISEATKCVIDV 64

Query: 64  IVNGGAPHRSCCNAISKLNDCSSFLLKGISSAEMSLIKNDCASWGI 109
           + N  APH SCC A SKLNDCS   LKGI SA+M LIK  CA WG+
Sbjct: 65  MKNAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of MC06g0563 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 1.51e-27
Identity = 60/113 (53.10%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   SVTKLPLLLLACIAILAPLATAHAA--AAAAPRAGEESDAFLTEKFSFIRCVSFLSESTK 60
           ++TKLPL+LL CIAILA   TA     AAA P          +E FS   C+SF+ ++TK
Sbjct: 5   AITKLPLVLLVCIAILASSVTARPTIVAAATPT---------SEDFSLFPCISFVPKATK 64

Query: 61  CVIDVIVNGGAPHRSCCNAISKLNDCSSFLLKGISSAEMSLIKNDCASWGITI 111
           CVIDV+ N  APH SCC AIS+L+DCSS  LK I S++M L+K+ CASWG++I
Sbjct: 65  CVIDVLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSI 108

[Close]

BLAST of MC06g0563 vs. ExPASy TrEMBL
Match: A0A5A7U9B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00630 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 2.86e-25
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 1   SVTKLPLLLLACIAILAPLATA--HAAAAAAPRAGEESDAFLTEKFSFIRCVSFLSESTK 60
           ++TKLPL+L  CIAILA   TA     AAA P          +E FS   C+SF+ ++TK
Sbjct: 5   AITKLPLVLRVCIAILASSVTACPTIVAAATPT---------SEDFSLFPCISFVPKATK 64

Query: 61  CVIDVIVNGGAPHRSCCNAISKLNDCSSFLLKGISSAEMSLIKNDCASWGITI 111
           CVIDV+ N  APH SCC AI++L+DCSS  LK I S +M L+K+ CASWG++I
Sbjct: 65  CVIDVLKNVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSI 108

[Close]

BLAST of MC06g0563 vs. ExPASy TrEMBL
Match: A0A5A7U2D8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00440 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.16e-25
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 1   SVTKLPLLLLACIAILAPLATAHAA--AAAAPRAGEESDAFLTEKFSFIRCVSFLSESTK 60
           ++TKLPL+LL CIAILA   TA     AAA P         +++ FS   C+SF+  +TK
Sbjct: 5   AITKLPLILLVCIAILASSVTARPTIVAAATP---------ISKDFSLFPCISFVPMATK 64

Query: 61  CVIDVIVNGGAPHRSCCNAISKLNDCSSFLLKGISSAEMSLIKNDCASWGITI 111
            VIDV+ N  APH SCC AIS+L+DCSS  LK I S +M L+K+ CASWG++I
Sbjct: 65  RVIDVLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSDDMILVKSICASWGVSI 108

The following BLAST results are available for this feature:

BLAST of MC06g0563 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g0563 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050078.1	5.74e-29	57.55	hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa]	[more]
KAE8653021.1	1.64e-28	55.66	hypothetical protein Csa_004567 [Cucumis sativus]	[more]
TYK10330.1	2.33e-28	56.60	hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa]	[more]
TYK10345.1	3.11e-27	53.10	hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]	[more]
KAA0050079.1	5.90e-25	51.33	hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa]	[more]

BLAST of MC06g0563 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U483	2.78e-29	57.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CG41	1.13e-28	56.60	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CFS6	1.51e-27	53.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9B0	2.86e-25	51.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U2D8	8.16e-25	51.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MC06g0563 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0563.1	MC06g0563.1	mRNA