MC06g0504 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0504
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	E3 ubiquitin-protein ligase MIEL1-like
Location	MC06: 4165094 .. 4165390 (+)
RNA-Seq Expression	MC06g0504
Synteny	MC06g0504

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAGTTAAACCCTTCGTTTCGATAGCCCTAATTGCTCTTCTCTTGTTTTCTGAATCCCTCGCTGTTTCGTCCGCTGACTACGGCCCGGATTCGAATTCCTTCACCGGAATACTCCGCCGGAATCTGCTCCACCCATCGGGGCGTCGGCGGGAAGATAATAGCGTCGGCTCCAATTTGGCCGAGAAGATCAGTATCAAAAGGGGGGTTCGATCCGCCGTAATTGCTGGTCGTGCCAGTGGATCGCCGTCCAGCCGGGCACCGCCCTTTCATTTTGGGTCTCTGCTCTGTTTC

mRNA sequence

ATGGCTGCAGTTAAACCCTTCGTTTCGATAGCCCTAATTGCTCTTCTCTTGTTTTCTGAATCCCTCGCTGTTTCGTCCGCTGACTACGGCCCGGATTCGAATTCCTTCACCGGAATACTCCGCCGGAATCTGCTCCACCCATCGGGGCGTCGGCGGGAAGATAATAGCGTCGGCTCCAATTTGGCCGAGAAGATCAGTATCAAAAGGGGGGTTCGATCCGCCGTAATTGCTGGTCGTGCCAGTGGATCGCCGTCCAGCCGGGCACCGCCCTTTCATTTTGGGTCTCTGCTCTGTTTC

Coding sequence (CDS)

ATGGCTGCAGTTAAACCCTTCGTTTCGATAGCCCTAATTGCTCTTCTCTTGTTTTCTGAATCCCTCGCTGTTTCGTCCGCTGACTACGGCCCGGATTCGAATTCCTTCACCGGAATACTCCGCCGGAATCTGCTCCACCCATCGGGGCGTCGGCGGGAAGATAATAGCGTCGGCTCCAATTTGGCCGAGAAGATCAGTATCAAAAGGGGGGTTCGATCCGCCGTAATTGCTGGTCGTGCCAGTGGATCGCCGTCCAGCCGGGCACCGCCCTTTCATTTTGGGTCTCTGCTCTGTTTC

Protein sequence

MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVGSNLAEKISIKRGVRSAVIAGRASGSPSSRAPPFHFGSLLCF

Homology

[Close]

BLAST of MC06g0504 vs. NCBI nr
Match: KAG6587814.1 (hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110 bits (276), Expect = 4.18e-29
Identity = 60/99 (60.61%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 1  MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVGSN 60
          MA +K    I LI LLL SES  VSSADY  D  S TGIL RN+LHP   +R D   GS+
Sbjct: 1  MAPIKRLFPITLICLLLLSESFPVSSADYDQDWKSLTGILHRNVLHPLEHQRLDKDTGSS 60

Query: 61 LAEKISIKRGVRSAVIAGRASGSPSSRAPPFHFGSLLCF 99
          LAEKISIKRG RSAVI G +S S SSR PPF+  S++CF
Sbjct: 61 LAEKISIKRGARSAVIGGHSSISSSSRVPPFNIASVICF 99

[Close]

BLAST of MC06g0504 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.6 bits (187), Expect = 1.24e-15
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 1  MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVGSN 60
          MAA+K  VS+AL+ALLLFSESL  S+ D   DSNS TG+LRRN+L  +  +  DNSV S+
Sbjct: 1  MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESS 60

Query: 61 LAEKIS--IKRGVRSAVIAGRASGSPSSRAPPFHFGSLL 97
             K++  IKR +R      R+S +  SR      GS+L
Sbjct: 61 PERKMNVHIKRRMRPVATGTRSSAANRSRIASIGVGSVL 99

[Close]

BLAST of MC06g0504 vs. NCBI nr
Match: KGN65176.1 (hypothetical protein Csa_019975 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 2.21e-12
Identity = 50/103 (48.54%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 2  AAVKPFV-SIALIALLLFSESL-AVSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVGS 61
          AA+  F+  IALI+LLLFSESL A+SS+D+  DSN                R  D   G+
Sbjct: 3  AAIHRFLLPIALISLLLFSESLPAISSSDHIQDSN----------------RPGDKDSGT 62

Query: 62 NLAEKISIKRGVRSAVIAGRASGSPSSRAPP---FHFGSLLCF 99
          +L EKISIKRGVRS VIAGR++ S S+R      F+ GS++CF
Sbjct: 63 SLTEKISIKRGVRSGVIAGRSTTSSSARVSSSSFFNVGSVICF 89

[Close]

BLAST of MC06g0504 vs. NCBI nr
Match: KAA0035100.1 (hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ95978.1 hypothetical protein E5676_scaffold271G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.93e-10
Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 1  MAAVKPFV-SIALIALLLFSESLA-VSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVG 60
          MAA+  F+  +ALI+LLLFSESLA +SS D+G +SN                RR D    
Sbjct: 1  MAAIHRFLLPLALISLLLFSESLAAISSTDHGQNSN----------------RRGDKGSD 60

Query: 61 SNLAEKISIKRGVRSAVIAGRASGSPSSRAPP--FHFGSLLCF 99
          ++LA KI  KRGVRS V AGR++ S S++     F+ GSL+CF
Sbjct: 61 TSLAGKIISKRGVRSGVTAGRSTSSSSAQMSSSFFNVGSLICF 87

[Close]

BLAST of MC06g0504 vs. NCBI nr
Match: KAG6575858.1 (hypothetical protein SDJN03_26497, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.4 bits (150), Expect = 2.34e-09
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 1   MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRR-EDNSVGS 60
           MA +K  +SIAL+ALLL SE L +S+AD+G   +   G+ RR+ L  + R +  +N +G 
Sbjct: 1   MAPIKSLISIALLALLLLSEHLPISAADHGVAPSPLAGVFRRDTLQTAERHQVAENGIGY 60

Query: 61  NLAEKISIKRGVRSAVIAGRASG-SPSS----RAPPFHFGSLLC 98
             + +  I+R  R AV   RA G SPSS    R   F  GSLLC
Sbjct: 61  QYSFEQKIRRRARRAVR--RAEGPSPSSANWSRTSSFGIGSLLC 102

[Close]

BLAST of MC06g0504 vs. ExPASy TrEMBL
Match: A0A0A0LYV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.07e-12
Identity = 50/103 (48.54%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 2  AAVKPFV-SIALIALLLFSESL-AVSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVGS 61
          AA+  F+  IALI+LLLFSESL A+SS+D+  DSN                R  D   G+
Sbjct: 3  AAIHRFLLPIALISLLLFSESLPAISSSDHIQDSN----------------RPGDKDSGT 62

Query: 62 NLAEKISIKRGVRSAVIAGRASGSPSSRAPP---FHFGSLLCF 99
          +L EKISIKRGVRS VIAGR++ S S+R      F+ GS++CF
Sbjct: 63 SLTEKISIKRGVRSGVIAGRSTTSSSARVSSSSFFNVGSVICF 89

[Close]

BLAST of MC06g0504 vs. ExPASy TrEMBL
Match: A0A5D3BCG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00480 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.33e-11
Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 1  MAAVKPFV-SIALIALLLFSESLA-VSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVG 60
          MAA+  F+  +ALI+LLLFSESLA +SS D+G +SN                RR D    
Sbjct: 1  MAAIHRFLLPLALISLLLFSESLAAISSTDHGQNSN----------------RRGDKGSD 60

Query: 61 SNLAEKISIKRGVRSAVIAGRASGSPSSRAPP--FHFGSLLCF 99
          ++LA KI  KRGVRS V AGR++ S S++     F+ GSL+CF
Sbjct: 61 TSLAGKIISKRGVRSGVTAGRSTSSSSAQMSSSFFNVGSLICF 87

[Close]

BLAST of MC06g0504 vs. ExPASy TrEMBL
Match: A0A5D3D3Y6 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001920 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.12e-08
Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = 0


Query: 1   MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVGSN 60
           MAA++P VSIAL+ALL FSESL  S        +S TGI  RN+LH    R  + SV S+
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLTS--------HSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 61  LAEKISI-----KRGVRSAVIAG-----RASGSPSSRAPPFHFGSLLC 98
              K +      +R +R  +I+G       S    SR   F  GS+LC
Sbjct: 61  YQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLC 100

[Close]

BLAST of MC06g0504 vs. ExPASy TrEMBL
Match: A0A6J1JZB1 (uncharacterized protein LOC111488793 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488793 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.85e-08
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 1   MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRR-EDNSVGS 60
           MA +K  +SIAL+ALLL  E L +S+AD+G   +   G+ R + L  + R +  +N +G+
Sbjct: 63  MAPIKSLISIALLALLLLFERLPISAADHGVAPSPLAGVFRLDTLQTAERHQVAENGIGN 122

Query: 61  NLAEKISIKRGVRSAVIAGRASG-SPSS----RAPPFHFGSLLC 98
             + +  I+R  R AV   RA G SPSS    R   F  GSLLC
Sbjct: 123 QYSFEQKIRRRARRAVR--RAEGPSPSSANWSRTSSFGVGSLLC 164

[Close]

BLAST of MC06g0504 vs. ExPASy TrEMBL
Match: A0A5A7VLE5 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00010 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.88e-08
Identity = 45/109 (41.28%), Postives = 59/109 (54.13%), Query Frame = 0


Query: 1   MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVGSN 60
           MAA+K  + I+L+ALL FSESL+ S+AD    SNS TG+LRRN+L  +     D+    N
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMN 60

Query: 61  LAEKISIKRG----VRSAVIAG------RASGSPSSRAPPFHFGSLLCF 99
               + IKRG    +R  V AG      R S +  S+   F  G LL F
Sbjct: 61  ----VHIKRGGGGRIR-PVAAGTGFTGNRKSAASRSQVASFGLGFLLFF 104

The following BLAST results are available for this feature:

BLAST of MC06g0504 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g0504 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587814.1	4.18e-29	60.61	hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6575859.1	1.24e-15	47.47	hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN65176.1	2.21e-12	48.54	hypothetical protein Csa_019975 [Cucumis sativus]	[more]
KAA0035100.1	1.93e-10	45.63	hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ9597...	[more]
KAG6575858.1	2.34e-09	42.31	hypothetical protein SDJN03_26497, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MC06g0504 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYV9	1.07e-12	48.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1	[more]
A0A5D3BCG4	9.33e-11	45.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D3Y6	1.12e-08	39.81	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1JZB1	3.85e-08	40.38	uncharacterized protein LOC111488793 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7VLE5	8.88e-08	41.28	Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of MC06g0504 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0504.1	MC06g0504.1	mRNA