MC06g0496 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0496
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC06: 4097459 .. 4097701 (-)
RNA-Seq Expression	MC06g0496
Synteny	MC06g0496

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAATTGGGCCTGAGAGATTGTTGGAGGACAGGTCAATTGCCAGGACCATGTCCATTTTACTAAGCTCCAATGGCAAAGGCCCATGTAAATGGTTGCTCGAGAGGTTCAAATACAATTTCAAGCTCCTCAATCCTGCAACTTCACTGGGAATAGCCCCTGAAATTTGGTTGCTAGAAAGGTCCAAAATTTCTAAGTTGGTACATTTTCCCAGGCTGGGTGGGATGGTGCCCGAGAGACGGTTT

mRNA sequence

GGAATTGGGCCTGAGAGATTGTTGGAGGACAGGTCAATTGCCAGGACCATGTCCATTTTACTAAGCTCCAATGGCAAAGGCCCATGTAAATGGTTGCTCGAGAGGTTCAAATACAATTTCAAGCTCCTCAATCCTGCAACTTCACTGGGAATAGCCCCTGAAATTTGGTTGCTAGAAAGGTCCAAAATTTCTAAGTTGGTACATTTTCCCAGGCTGGGTGGGATGGTGCCCGAGAGACGGTTT

Coding sequence (CDS)

GGAATTGGGCCTGAGAGATTGTTGGAGGACAGGTCAATTGCCAGGACCATGTCCATTTTACTAAGCTCCAATGGCAAAGGCCCATGTAAATGGTTGCTCGAGAGGTTCAAATACAATTTCAAGCTCCTCAATCCTGCAACTTCACTGGGAATAGCCCCTGAAATTTGGTTGCTAGAAAGGTCCAAAATTTCTAAGTTGGTACATTTTCCCAGGCTGGGTGGGATGGTGCCCGAGAGACGGTTT

Protein sequence

GIGPERLLEDRSIARTMSILLSSNGKGPCKWLLERFKYNFKLLNPATSLGIAPEIWLLERSKISKLVHFPRLGGMVPERRF

Homology

[Close]

BLAST of MC06g0496 vs. NCBI nr
Match: PRQ57106.1 (hypothetical protein RchiOBHm_Chr1g0344651 [Rosa chinensis])

HSP 1 Score: 52.0 bits (123), Expect = 7.20e-06
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 1   GIGPERLLEDRS--IARTMSILLSSNGKGPCKWLLERFKYNFKLLNPATSLGIAPEIWLL 60
           GIGPE+LL D+   ++  M ++L   G GP +WLLER + + +   P  S GI P  WL 
Sbjct: 61  GIGPEKLLCDKFNLLSEVMEVMLE--GIGPNRWLLERSRASNRCKLPIPS-GIFPVKWLC 120

Query: 61  ERSKISKLVHFPRLGGMVPER 79
           ++ K+ K V F    G+ P R
Sbjct: 121 DKFKLPKAVRFVISFGISPHR 138

[Close]

BLAST of MC06g0496 vs. NCBI nr
Match: PUZ58077.1 (hypothetical protein GQ55_5G480000 [Panicum hallii var. hallii])

HSP 1 Score: 51.2 bits (121), Expect = 1.40e-05
Identity = 27/79 (34.18%), Postives = 42/79 (53.16%), Query Frame = 0


Query: 1   GIGPERLLEDRSIARTMSILLSSNGKGPCKWLLERFKYNFKLLNPATSLGIAPEIWLLER 60
           GI P+    DR        L +S+G+GP   L ++ KY  +     +SLGI P  W+L++
Sbjct: 52  GISPDNRFPDRYRLLRFLKLPTSDGRGPDNELCDKSKYIERAGGLKSSLGIEPFRWVLDK 111

Query: 61  SKISKLVHFPRLGGMVPER 79
           S+  +L  FP L G+ P +
Sbjct: 112 SRSVRLFSFPNLDGITPSK 130

[Close]

BLAST of MC06g0496 vs. NCBI nr
Match: OAD21754.1 (hypothetical protein THIOM_002471 [Candidatus Thiomargarita nelsonii])

HSP 1 Score: 49.7 bits (117), Expect = 2.38e-05
Identity = 30/77 (38.96%), Postives = 40/77 (51.95%), Query Frame = 0


Query: 1  GIGPERLLEDRSIARTMSILLSSNGKGPCKWLLERFKYNFKLLNPATSLGIAPEIWLLER 60
          GI P   L DR     +  LL+S G  P  WL +R  + FKLL    S+GI+P  WL +R
Sbjct: 6  GISPLSWLSDRDSFFKLLRLLNSVGISPLSWLSDRDSF-FKLLRLLNSVGISPVSWLKDR 65

Query: 61 SKISKLVHFPRLGGMVP 77
            +SKL+      G+ P
Sbjct: 66 LIVSKLLRLLNSVGISP 81

[Close]

BLAST of MC06g0496 vs. NCBI nr
Match: POO02929.1 (hypothetical protein TorRG33x02_009900 [Trema orientale])

HSP 1 Score: 46.6 bits (109), Expect = 8.79e-04
Identity = 30/79 (37.97%), Postives = 38/79 (48.10%), Query Frame = 0


Query: 1   GIGPERLLEDRSIARTMSILLSSNGKGPCKWLLERFKYNFKLLNPATSLGIAPEIWLLER 60
           GI PER L +RS    + I+    G  P K LL RFK        A   GI PEIWL ER
Sbjct: 77  GIRPERELLERSRMDNVGIVAIGFGISPVKELLWRFKLT-SFSQEAILWGICPEIWLFER 136

Query: 61  SKISKLVHFPRLGGMVPER 79
           S+  +        G++P +
Sbjct: 137 SRTEREGQSWNWSGILPSK 154

[Close]

BLAST of MC06g0496 vs. ExPASy TrEMBL
Match: A0A0A9L7K2 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.26e-07
Identity = 31/77 (40.26%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 1  GIGPERLLEDRSIARTMSILLSSNGKGPCKWLLERFKYNFKLLNPATSLGIAPEIWLLER 60
          GIGP RLL D+S   +   L  + G GP + LL   KY ++L    T +GI+P  WLLER
Sbjct: 16 GIGPLRLLYDKSRKTSWDKLADAEGNGPDRVLLLSLKY-WRLSRWPTEVGISPYKWLLER 75

Query: 61 SKISKLVHFPRLGGMVP 77
          S +      P   G+ P
Sbjct: 76 SNVLSFASLPISAGIGP 91

[Close]

BLAST of MC06g0496 vs. ExPASy TrEMBL
Match: A0A0A9LKI6 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.68e-07
Identity = 38/103 (36.89%), Postives = 48/103 (46.60%), Query Frame = 0


Query: 1   GIGPERLLEDRSIARTMSILLSSNGKGPCKWLLERFKYNFKLLNPATSLGIAPEIWLLER 60
           GIGP RLL D+S   +   L  + G GP + LL   KY ++L    T +GI+P  WLLER
Sbjct: 10  GIGPLRLLYDKSRKTSWDKLADAEGNGPDRVLLLSLKY-WRLSRWPTEVGISPYKWLLER 69

Query: 61  SKI------------------------SKLVHFPRLGGMVPER 79
           S +                        S+LV FP LG   PER
Sbjct: 70  SNVLSFASLPISAGIGPVMLLFCRRTVSRLVRFPMLGESRPER 111

[Close]

BLAST of MC06g0496 vs. ExPASy TrEMBL
Match: A0A2P6SEJ6 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0344651 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.49e-06
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 1   GIGPERLLEDRS--IARTMSILLSSNGKGPCKWLLERFKYNFKLLNPATSLGIAPEIWLL 60
           GIGPE+LL D+   ++  M ++L   G GP +WLLER + + +   P  S GI P  WL 
Sbjct: 61  GIGPEKLLCDKFNLLSEVMEVMLE--GIGPNRWLLERSRASNRCKLPIPS-GIFPVKWLC 120

Query: 61  ERSKISKLVHFPRLGGMVPER 79
           ++ K+ K V F    G+ P R
Sbjct: 121 DKFKLPKAVRFVISFGISPHR 138

[Close]

BLAST of MC06g0496 vs. ExPASy TrEMBL
Match: A0A2T7DR74 (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G480000 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.76e-06
Identity = 27/79 (34.18%), Postives = 42/79 (53.16%), Query Frame = 0


Query: 1   GIGPERLLEDRSIARTMSILLSSNGKGPCKWLLERFKYNFKLLNPATSLGIAPEIWLLER 60
           GI P+    DR        L +S+G+GP   L ++ KY  +     +SLGI P  W+L++
Sbjct: 52  GISPDNRFPDRYRLLRFLKLPTSDGRGPDNELCDKSKYIERAGGLKSSLGIEPFRWVLDK 111

Query: 61  SKISKLVHFPRLGGMVPER 79
           S+  +L  FP L G+ P +
Sbjct: 112 SRSVRLFSFPNLDGITPSK 130

[Close]

BLAST of MC06g0496 vs. ExPASy TrEMBL
Match: A0A176S1B5 (Uncharacterized protein OS=Candidatus Thiomargarita nelsonii OX=1003181 GN=THIOM_002471 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.15e-05
Identity = 30/77 (38.96%), Postives = 40/77 (51.95%), Query Frame = 0


Query: 1  GIGPERLLEDRSIARTMSILLSSNGKGPCKWLLERFKYNFKLLNPATSLGIAPEIWLLER 60
          GI P   L DR     +  LL+S G  P  WL +R  + FKLL    S+GI+P  WL +R
Sbjct: 6  GISPLSWLSDRDSFFKLLRLLNSVGISPLSWLSDRDSF-FKLLRLLNSVGISPVSWLKDR 65

Query: 61 SKISKLVHFPRLGGMVP 77
            +SKL+      G+ P
Sbjct: 66 LIVSKLLRLLNSVGISP 81

The following BLAST results are available for this feature:

BLAST of MC06g0496 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g0496 vs. NCBI nr


Match Name	E-value	Identity	Description
PRQ57106.1	7.20e-06	39.51	hypothetical protein RchiOBHm_Chr1g0344651 [Rosa chinensis]	[more]
PUZ58077.1	1.40e-05	34.18	hypothetical protein GQ55_5G480000 [Panicum hallii var. hallii]	[more]
OAD21754.1	2.38e-05	38.96	hypothetical protein THIOM_002471 [Candidatus Thiomargarita nelsonii]	[more]
POO02929.1	8.79e-04	37.97	hypothetical protein TorRG33x02_009900 [Trema orientale]	[more]

BLAST of MC06g0496 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9L7K2	2.26e-07	40.26	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A0A9LKI6	3.68e-07	36.89	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A2P6SEJ6	3.49e-06	39.51	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0344651 PE=4...	[more]
A0A2T7DR74	6.76e-06	34.18	Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G48000...	[more]
A0A176S1B5	1.15e-05	38.96	Uncharacterized protein OS=Candidatus Thiomargarita nelsonii OX=1003181 GN=THIOM...	[more]

BLAST of MC06g0496 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0496.1	MC06g0496.1	mRNA