MC06g0429 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0429
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Replication protein A 32 kDa subunit B-like
Location	MC06: 3532218 .. 3537843 (-)
RNA-Seq Expression	MC06g0429
Synteny	MC06g0429

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGGAGGGAAGCTGAACTGGTATTTCTAGGTTTTAACAGAAGAAAATTTCATTCCGAAGACTGCACTTCAGTTCGCTCTCGATCAGTCATTTGATGCTCTTATAGTGGAAGAATGATGTATGGAAGTCAATTCGATGGCAACGCTGCCTTCTCCGGTGGCGGATTCATGCCATCTCAGACCACCCAGGCCCCTGATCATTCCTTATCTCCGGCGAAAGTACGTTCTGTTTCGAGATATAGTATTAGCTCTCTTTCAGCTTCCTTTTAATTGCGTATAGATTCATAATTTCCGCTATTTGTATTTATCACATACGTTTGATGTATTTTCTGACCGAATTCGTCACAGTGGTTTGAAATGATTCAAACTTTTATAGTTAATTTGGTGGATAATGGATATATTATTTGGATTTGATGTTTGGTTCATATAATTGAAGTATGTTTGGTATGATGGTATTTTTGCCCTTACGTTTTCCGCGGACGATAGTTCCTTCTCCTTGCGGTTGCCGGAAAAATTAAGTTTGTATTTGTATGTCTTCGTCTATTGGAAAAATACGAAAGGACCTTCATGCCTTTTATGTCGTGAGTTATTTAACACTTGGTTTCACATGTTTTCACCTTTTGTATCTCCTTTAGAAAGCGTGTTCTCGACATAATGAGGCCTTATATTTTTCGTGTCTGATTTGCAGAATAGAGATGTCCAAGCGTTGCTTCCATTAACGGTGAAGCAGATAAATGATGCATTCCTGTCTAATGATGATAAATCAAGCTTTGTCATTAATGGTGTTGATGTTAATAATGTTAGTTATTGATACTCGTATTTTTTTAGTTATTATTTTCTTATAAATTTTATAAATTTGTTGAGTTGCTTGTTATTGATACTCGTGTTAATAATGTTAGTTATTGATACTCCTATTTTTTTCAGGTTAAGCTTGTAGGGATGGTGAGCAATAGAGCAGGAAGAATTACTGATGTGACTTTTGCACTGGACGATGGCACAGGACGGATTGACTGTAGCAAATGGTTTGATTTTCTCACTCTCTCCCCCTTCTAAGATGAGAAAGAAGTTGAGCTTTTGTTCCCTTGTTAATATAGATTTTGTTTCGATGTATTCATAGGGTCAATGAAGCAGCAGATTCAAATGAAGTTGAGGGAATATTGTAATGTTCCTTTTACCCTGTCTCAATAACATTTAAAATATTCCCCCAATATTATAATGTCCTTTGTGCCATTATAATTTAAAGTTTTCATAATTGGGTTTTCATTCCTTCATTTCCTAGAATATGTCGGTAATTCGGATGGAACTTTGAAACTTGACATGTTCTGTGTGCCATAGCATGTTGTAGACATGGAGGTTGATGAGTGTTCTATGGTTTTAAGCTTTCTTTTACAGTTTTACTCATTTGGGGAATTCTATTATTTACTCATAGTGAAATGAGATCCTCTCTGTCGGGTGAAAAAATTGCAAACTAGCTGTTTTGGTTTAAGCTATAGCTGAACACAGTGATTCTGCATACATAACAGGATTCAAGAAATATGATTATTGTAGCTAAAGTACACATTCACTCTGTAACGTGTATAGAGCTTTACGAGCATGCCTGTGAGGCTATGACTAAACCAGCAGTCTTATTTTTAATATATATATGTAATTCATTGTTCTGTCTTATACCATAGATGTTTTCTTTTTTTCCTCTAGCCATGCTATGATTAAGTCTAATTTGCTTTTTCCAGCAAAGTGAACTACAAACCTGTAGTCCATGCTGCTGTAGAGTATACCAATGCCTCATATTTGTCTCAATTCTATTGACATGGCGAGTTTTGATGGAAAATGGAGTGTACCTGTTTTCTTTTTTGATCAGATACCCATTGTATATCACAATTTAAACAAATTATTCATAATGAGGACTTGATCATAATAAGAACTTGATCATAATAAGAACTTGATCATAATAAGAACTTGATCATCTAGTGTTATTGAACAGGTATATGTAAATTGTTGGATTGAACCTGTTATACTTGTATGTATCTAGCATTTTATGGACCCTATTTTCCCCTCGTTTTACTCTCTCCAAATGTGAACTTGCAGTTCAGTTGACCAATATTAGACTAACGAGACATTTTGTGTATCATACATGAACCTCGCACATAAAGAATGAGAGATTGCTGGAATCATGTTCACGTCCGTAAGATATCCATCAAGTTGCAAATGTTGCAATTATTGTACATTGAAATATCTCTTGTGGTTCTTCTGGATTATAGCCAGTGTGTGACTTGAATTAAGATCTCGAGGGTTTTGGATCATTTGGGATAACTATTTGTACTAAGTGATGCATTGAGTCATCTCTCATAATCTAGACCTATTTATCTCTATCATTTAAATAAAATCCTCATGCTGCAGGGATGGCATGTATGTTCGGGTCCATGGCCACTTGAAAAGCTTTCAGGGTAAAACAACTTTAAATGTCTTTTCTATCAGGTACAAGTATACCTTTCCCTTGGATTTTTTGGAGGATGGTTTTGTTACTCCTGATGAAACTCTAACTGCATCAATGCACTTCCTGAATTATACTGAATTTGAGTTTATGGTTATATTTTTTGAAATTGAGTTATGGTGAGCCACATTGTTAACTAACAATTTAATTATGATTTTCTGTTACTGAAAGTTTGATTATTTGTAACTAAATCATTCGTGAGCAGTTCTTTTCTACCTCAAAATTTCCCTGTGGTGCTTGTTCTCTGTTACTTGTGTACTTGATATCTATAACGTTGCTGCATTGGAGTTTTGACATACAATATTTGGCTTGCAGGTCTGTTACCGACTATAATGAGATCACAAGTCACTTCATAGAATGCATATATGTTCATTTCTACAACACCAGGTTACGGGTATTGATCAAGCTCTTTCAAAATTTACTCGATGTTTTGATTAAGTGTGAAGTAATATTTGATTGCCATACTATGCTTCTCTTTTTGGATTATGTCTAATTTGTGTTGATAGAAACAACATAGTAGTATGACTACTCGGCCACAAATGACAAATTTATCTAATTCGCCTATGAAAGGATATCAAGCTGCCTCTTCAAATCAAGTAAGACCCTGTCGCAATTCACATTTCATAAGCTATCGCTTGTATATGCATCCTTCTGATGATCTTTTTCAGTACTCTGGTCAAGTAGGAGGTGGTGATCGTTGGAAAAGCCTTGAGCAGATGGTCTTAGATTTTTTGCAACTTCCTTCATGCGAGTGAGTGCCTTTTTCACGTTTCATACTTCCCATTTGTATTTCCATGCTTGTTTGTCTTGAACTTGTTATCTTGTCAGATCAGATGTTGTTATAAGAGAAATCATTTTATAAGTTTTTTGGTTTTCGTGACCTTGATCAATGCCTGTGTCTTTCTTTCTTTCTCCCTTCCCTTTTTTTTCCCTTAGTGAAACTTGATCTCTATAGCTTGGTAAACATTTATTATTAGGGTAGTTGAATTGCTGAAGCACCAATAGAAAAAGTTTGTCCCAAGATGGGATTTATTGAGAGAATGTGTGGTCCCGATCTACTTAATTTGTTTTTTGCTTTTTCAGGAGTATAGGGGCTGGATATCTAACTAAGTATTTAATGGTGTACAGAATTAAAAATATTTGACTCACTACAAGCAACCATCTATAGTGAAAAGCTTTATATTTTGAATGATGCATGAGTTATGTTCGATTGACAAGAGAATATTTTGTCAATATGGACTCTCAATATATTAAGCAAGGGTTACAATGATTTGACCATTATTTAGTTTATTTATTATGTTTCCTTTGTACTTGGGTTCATTTTGTGCGTGTGTTTCCTTTGGAGCAAAATAAATGACATGAAATGTTATTTACCAAGCAGCTGACATGATATAAGGTATGGCTGATCCATATTTTCGAAGTATAGCCTCTTTCTGAATTTTACTACTGTTCTGTGCTCCTTCACTATTTTCTTCCCCGGCTCATCTATTTCTTAGGTTCAATTTAACCTTAGGACTTATGCATTCACTTTTCTTTTGTTTCAGTACTGAGAGGGGGGCACACCGTGATGTCATTGCACAAAATCTCAATGTTCCAATGGAAAAGCTCATGTATTACTCTCTTCCTTTCGCTTTTACTTGACAGAAGCACTTTGATAGGTCTCAGGTGACCTATCTCTAAGATTCAATAACAAGAGAAAGATAAACAGCAAAGACAATTCCCTACCACTTAAAAAGGCCAGGCACTCTCCTCTTAGAACAAGTCTAAGCCTAACAAAATACCAGCCTAAGAAAATAGAAACTTCCATGCCCAACCTTTCAAAGGACCCCTCCCCAGAACGGTCTATGGCCGTACCAACCTTTTACAAAAATGGGGGCCCCACTCTCACCCTGCACTCCCATGTCTAACTAATTTCTGTCTGACTCATTTTCTTTCATGCGTATGTGAAGTGTACGGGTTCTTTGCCTCTGTCACCCTTGTCTTGCAAGTATAGGTTTAACTAAATATACCGTTTTGGTTGTTATTTTGCAGCCCAGCAATGAAAAATCTTGAAGAGGAAGGCCTAATCTACTCAACAACTGATGATTACCACTTCAAATCAACTGCCAATGGTTGACGTCTCTATTATGTTTGTAACTAATGAATTCAAGGCAAGTTTAATTCCTGCCGTCCTTTTCATATGGTTTAAGTTGGGAAAATCTTTGTAGTCAAAATATGATCCGTCTGTTTTAGCCTTTACTATGTGACCTGCCAAGCGAACAGAGGAAAAAAAGGAGAGAACAAATGGTCCCACGGCTATGGCTTGTTAAAACTATTATAATGACATTTGTTTCTATTGTGCAACATTTTTTAAACGAACTAATATAATGCTCAGCACAGATGCAGCCTACAGAGGTGATTTTGGCTGATTCTCAGGATCTTATGGTATGTTCTTTCTAATCCACAAAAAACTGTAGCTTACTTTTGTTTTGGGGATGTTAGAAGCTAAAGCCTTGTTTATTTTTACATGCATTACCGACCAACTCAAAACTTCAACCAAAATCTTTTATCTTTTGTGCCTTCAAAAACTGTCTCTGCTGAATCTTAGATATTATTTTTTGGTAGGGTTTAAAATATGGGTTCTTTACTTTGAAAAACATGGAATCCTATAACAAATTAGCAGGAAGTTGATCTTTTTAATTTACCTCAAGATATAATATATGAATCAGAAAAGTTAAAAAGAGTTTATCAACAACCTACCCCCATAAAATGTAATCACAAGTAACTTTAATCAGTTGATTTAGAATAAAAATCATTCAACGAGGCCCCGCCCCACATTGCTAAGAAGCTGTATGTAGGGGAAAAGAAAAATCTAAAGTAAGAAACCAAAGATTCAGATAATGATTTATATTCTTTACAAAAACATGGAATAAAATACATTAAAAAGGCATGTGAAAATGGATCATAAACAAATAGGAAGCCAGTAACGTGAGGAATCATTCCATCCACAAAATCCCCATAACTTTGTATACTTATTTTGACCGTAAGACATTATCATCCCAAGTTCCCATTATCTTCCCCTTATCTCTCTGAAATTTAGTTTCAGGTTCACATTACTAATAATGAAAAGGGGAATCAGAAAGCAAATTCAAACAAAG

mRNA sequence

CGGGAGGGAAGCTGAACTGGTATTTCTAGGTTTTAACAGAAGAAAATTTCATTCCGAAGACTGCACTTCAGTTCGCTCTCGATCAGTCATTTGATGCTCTTATAGTGGAAGAATGATGTATGGAAGTCAATTCGATGGCAACGCTGCCTTCTCCGGTGGCGGATTCATGCCATCTCAGACCACCCAGGCCCCTGATCATTCCTTATCTCCGGCGAAAAATAGAGATGTCCAAGCGTTGCTTCCATTAACGGTGAAGCAGATAAATGATGCATTCCTGTCTAATGATGATAAATCAAGCTTTGTCATTAATGGTGTTGATGTTAATAATGTTAAGCTTGTAGGGATGGTGAGCAATAGAGCAGGAAGAATTACTGATGTGACTTTTGCACTGGACGATGGCACAGGACGGATTGACTGTAGCAAATGGGTCAATGAAGCAGCAGATTCAAATGAAGTTGAGGGAATATTGGATGGCATGTATGTTCGGGTCCATGGCCACTTGAAAAGCTTTCAGGGTAAAACAACTTTAAATGTCTTTTCTATCAGGTCTGTTACCGACTATAATGAGATCACAAGTCACTTCATAGAATGCATATATGTTCATTTCTACAACACCAGGTTACGGAAACAACATAGTAGTATGACTACTCGGCCACAAATGACAAATTTATCTAATTCGCCTATGAAAGGATATCAAGCTGCCTCTTCAAATCAATACTCTGGTCAAGTAGGAGGTGGTGATCGTTGGAAAAGCCTTGAGCAGATGGTCTTAGATTTTTTGCAACTTCCTTCATGCGATACTGAGAGGGGGGCACACCGTGATGTCATTGCACAAAATCTCAATGTTCCAATGGAAAAGCTCATCCCAGCAATGAAAAATCTTGAAGAGGAAGGCCTAATCTACTCAACAACTGATGATTACCACTTCAAATCAACTGCCAATGGTTGACGTCTCTATTATGTTTGTAACTAATGAATTCAAGGCAAGTTTAATTCCTGCCGTCCTTTTCATATGGTTTAAGTTGGGAAAATCTTTGTAGTCAAAATATGATCCGTCTGTTTTAGCCTTTACTATGTGACCTGCCAAGCGAACAGAGGAAAAAAAGGAGAGAACAAATGGTCCCACGGCTATGGCTTGTTAAAACTATTATAATGACATTTGTTTCTATTGTGCAACATTTTTTAAACGAACTAATATAATGCTCAGCACAGATGCAGCCTACAGAGGTGATTTTGGCTGATTCTCAGGATCTTATGTTTCAGGTTCACATTACTAATAATGAAAAGGGGAATCAGAAAGCAAATTCAAACAAAG

Coding sequence (CDS)

ATGATGTATGGAAGTCAATTCGATGGCAACGCTGCCTTCTCCGGTGGCGGATTCATGCCATCTCAGACCACCCAGGCCCCTGATCATTCCTTATCTCCGGCGAAAAATAGAGATGTCCAAGCGTTGCTTCCATTAACGGTGAAGCAGATAAATGATGCATTCCTGTCTAATGATGATAAATCAAGCTTTGTCATTAATGGTGTTGATGTTAATAATGTTAAGCTTGTAGGGATGGTGAGCAATAGAGCAGGAAGAATTACTGATGTGACTTTTGCACTGGACGATGGCACAGGACGGATTGACTGTAGCAAATGGGTCAATGAAGCAGCAGATTCAAATGAAGTTGAGGGAATATTGGATGGCATGTATGTTCGGGTCCATGGCCACTTGAAAAGCTTTCAGGGTAAAACAACTTTAAATGTCTTTTCTATCAGGTCTGTTACCGACTATAATGAGATCACAAGTCACTTCATAGAATGCATATATGTTCATTTCTACAACACCAGGTTACGGAAACAACATAGTAGTATGACTACTCGGCCACAAATGACAAATTTATCTAATTCGCCTATGAAAGGATATCAAGCTGCCTCTTCAAATCAATACTCTGGTCAAGTAGGAGGTGGTGATCGTTGGAAAAGCCTTGAGCAGATGGTCTTAGATTTTTTGCAACTTCCTTCATGCGATACTGAGAGGGGGGCACACCGTGATGTCATTGCACAAAATCTCAATGTTCCAATGGAAAAGCTCATCCCAGCAATGAAAAATCTTGAAGAGGAAGGCCTAATCTACTCAACAACTGATGATTACCACTTCAAATCAACTGCCAATGGTTGA

Protein sequence

MMYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDKSSFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSSMTTRPQMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDTERGAHRDVIAQNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG

Homology

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BLAST of MC06g0429 vs. ExPASy Swiss-Prot
Match: Q8LFJ8 (Replication protein A 32 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA2B PE=2 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 8.9e-68
Identity = 138/281 (49.11%), Postives = 183/281 (65.12%), Query Frame = 0


Query: 2   MYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDKS 61
           MYG  FDGNAAF+GGGFMPSQ T     S S  KNRDV+ LLPLT+KQ++ A  S   +S
Sbjct: 1   MYGGDFDGNAAFAGGGFMPSQATTQAHESSSSLKNRDVRTLLPLTLKQLSSA--STTGES 60

Query: 62  SFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 121
           +F I+GVD+  V +VG +S    RIT V F +DDGTG +DC +W +   ++ E+E +  G
Sbjct: 61  NFSIDGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLG 120

Query: 122 MYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRK---QHSSMT 181
           MYVR+HGHLK FQGK ++NVFS+R VTD+NEI  HF EC+YVH YNT+LR       + T
Sbjct: 121 MYVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDTAT 180

Query: 182 TRPQMT-NLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLP-SCDTERGAHR 241
            RPQM  +   +P K YQ   SNQ+  Q    D    ++Q VL++L  P    +E G H 
Sbjct: 181 PRPQMPYSTMPTPAKPYQTGPSNQFPNQF--NDSMHGVKQTVLNYLNQPMHIVSEAGVHC 240

Query: 242 DVIAQNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTAN 278
           D+IA+ L +P+ ++  A++ L  +G IYST D+  FKSTAN
Sbjct: 241 DIIARELRIPLLQVKEALEQLSNDGCIYSTLDETCFKSTAN 277

[Close]

BLAST of MC06g0429 vs. ExPASy Swiss-Prot
Match: Q9ZQ19 (Replication protein A 32 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA2A PE=1 SV=2)

HSP 1 Score: 255.8 bits (652), Expect = 5.8e-67
Identity = 130/275 (47.27%), Postives = 181/275 (65.82%), Query Frame = 0


Query: 1   MMYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDK 60
           M   SQF+ N+ FSGGGFM SQ +QA + S S AKNRD Q L+P+TVKQI + F S+ +K
Sbjct: 1   MFSSSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEK 60

Query: 61  SSFVINGVDVNNVKLVGMVSNR-AGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGIL 120
           S  VING+ + NV LVG+V ++   ++T+V F LDDGTGRIDC +WV+E  D+ E+E + 
Sbjct: 61  SGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVR 120

Query: 121 DGMYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSSMTT 180
           DG YVR+ GHLK+FQGKT L VFS+R + D+NE+T H+IECI+ +  N+  ++Q     T
Sbjct: 121 DGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVT 180

Query: 181 RPQMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDT-ERGAHRDV 240
           +   T              +   S Q   G+  K+L+ M+LD+L+ P+C   ++G H D 
Sbjct: 181 QSVNTTFQGGSNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPACTARQQGIHIDE 240

Query: 241 IAQNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFK 274
           IAQ L +P  KL   +++LE +GLIYST D+YHFK
Sbjct: 241 IAQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275

[Close]

BLAST of MC06g0429 vs. ExPASy Swiss-Prot
Match: Q6H7J5 (Replication protein A 32 kDa subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA2B PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.4e-49
Identity = 109/288 (37.85%), Postives = 173/288 (60.07%), Query Frame = 0


Query: 4   GSQFDG-----NAAFSGGGFMPSQTTQAPDHSLSPA----KNRDVQALLPLTVKQINDAF 63
           G  +DG     ++ F GGGFMPSQ T A + +        K+R+ QALLPLTVKQI DA 
Sbjct: 11  GGNYDGGGGNASSLFGGGGFMPSQATNAAEGTSGGGGGFPKSRNAQALLPLTVKQIMDAS 70

Query: 64  LSNDDKSSFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNE 123
            +NDDKS+F +NG++V+ V+LVG + N+  R+TDV+F LDDGTGR+  ++W N++ D+ E
Sbjct: 71  QTNDDKSNFAVNGMEVSTVRLVGRMLNKLDRVTDVSFTLDDGTGRVPVNRWENDSTDTKE 130

Query: 124 VEGILDGMYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQ- 183
           +  I +G YV V+G LK FQGK  +  +S+R +T++N++T HF+ C++VH   TR + Q 
Sbjct: 131 MADIQNGDYVIVNGGLKGFQGKRQVVAYSVRRITNFNDVTHHFLHCVHVHLELTRPKSQV 190

Query: 184 HSSMTTRPQMTNLSNSPMKGYQAASSNQ---YSGQVGGGDRWKSLEQMVLDFLQLPSCDT 243
           +++  T      +    M   Q+  +NQ   +S     G     ++ ++  F      + 
Sbjct: 191 NANTATGTPNQTMPRDSMAYNQSPLTNQASTFSAPQNTGTGTNMIDLVLNVFHDPAVMND 250

Query: 244 ERGAHRDVIAQNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 279
           + G   D +++ LN+P E +   + +  + G +Y+T DD+H+KST NG
Sbjct: 251 DHGVGVDYVSRRLNLPEETVGKIIIDQVDLGHLYATIDDHHYKSTMNG 298

[Close]

BLAST of MC06g0429 vs. ExPASy Swiss-Prot
Match: Q6K9U2 (Replication protein A 32 kDa subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=RPA2A PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.9e-42
Identity = 109/283 (38.52%), Postives = 160/283 (56.54%), Query Frame = 0


Query: 1   MMYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDA---FLSN 60
           MM  SQ D   AFS   F  SQ   A   S +P+K+R   + +PLTVKQI++A    ++ 
Sbjct: 1   MMSFSQPD---AFSPSQFTSSQNAAA--DSTTPSKSRGASSTMPLTVKQISEAQQSGITG 60

Query: 61  DDKSSFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEG 120
           +  + FV++GV+  NV+LVG+VS +  R TDV+F +DDGTGR+D  +WVN+ ADS E   
Sbjct: 61  EKGAPFVVDGVETANVRLVGLVSGKTERNTDVSFTIDDGTGRLDFIRWVNDGADSAETAA 120

Query: 121 ILDGMYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSSM 180
           + +GMYV V G LK  Q +     F+IR VTDYNE+T HFI+C+ +H  NT+ +    + 
Sbjct: 121 VQNGMYVSVIGSLKGLQERKRATAFAIRPVTDYNEVTLHFIQCVRMHLENTKSQIGSPAK 180

Query: 181 TTRPQMTNLSN--SPMKGYQAASSNQYSG-QVGGGDRWKSLEQMVLDFLQLPSCDTERGA 240
           T     ++ SN  S M    +  SN      V  G +     +++  F +  + ++E G 
Sbjct: 181 TYSAMGSSSSNGFSEMTTPTSVKSNPAPVLSVTNGSKTDLNTEVLNVFREPANVESEHGV 240

Query: 241 HRDVIAQNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTAN 278
           H D I +   +P  K+  A+  L + G IYST D+ H+KS  N
Sbjct: 241 HIDEIVKRFRLPEAKIKVAIDYLADIGHIYSTIDESHYKSAFN 278

[Close]

BLAST of MC06g0429 vs. ExPASy Swiss-Prot
Match: Q92373 (Replication factor A protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssb2 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-23
Identity = 92/291 (31.62%), Postives = 143/291 (49.14%), Query Frame = 0


Query: 3   YGSQFDGNAAFS-----GGGFMPSQTTQAPDHSLSPAKNRDVQA---LLPLTVKQINDAF 62
           YG  F  N+AFS     G GF         D S  P+ +R   A   L P+T+KQI +A 
Sbjct: 11  YGPDF--NSAFSPGMGGGAGF------NEYDQSSQPSVDRQQGAGNKLRPVTIKQILNAS 70

Query: 63  LSNDDKSSFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNE 122
             + D + F I+GV+V  V  VG++ N   + T+ T+ ++DGTG I+   W +  A S  
Sbjct: 71  QVHAD-AEFKIDGVEVGQVTFVGVLRNIHAQTTNTTYQIEDGTGMIEVRHWEHIDALSE- 130

Query: 123 VEGILDGMYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQH 182
              +    YVRV+G++K F GK  +    IR++ D+NE+  HF+E I VH +        
Sbjct: 131 ---LATDTYVRVYGNIKIFSGKIYIASQYIRTIKDHNEVHFHFLEAIAVHLH-------- 190

Query: 183 SSMTTRPQMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLP-------- 242
              T +    N +N+P  GY  +++  Y+  +       SLEQ + ++   P        
Sbjct: 191 --FTQKANAVNGANAP--GYGTSNALGYN-NISSNGAANSLEQKLAEYSLTPAQMTVMQA 250

Query: 243 ---SCDTERGAHRDVIAQNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKS 275
              + +T  G H   +AQ++  P   L      L++EG+IY+T D+ HFKS
Sbjct: 251 IHSAPETNEGVHVRQLAQSVG-PGIDLTAVTDFLQQEGIIYTTIDENHFKS 274

[Close]

BLAST of MC06g0429 vs. NCBI nr
Match: XP_022135425.1 (replication protein A 32 kDa subunit B isoform X1 [Momordica charantia])

HSP 1 Score: 558 bits (1439), Expect = 1.14e-200
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0


Query: 1   MMYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDK 60
           MMYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDK
Sbjct: 1   MMYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDK 60

Query: 61  SSFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILD 120
           SSFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILD
Sbjct: 61  SSFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILD 120

Query: 121 GMYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSSMTTR 180
           GMYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSSMTTR
Sbjct: 121 GMYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSSMTTR 180

Query: 181 PQMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDTERGAHRDVIA 240
           PQMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDTERGAHRDVIA
Sbjct: 181 PQMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDTERGAHRDVIA 240

Query: 241 QNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278
           QNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 QNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278

[Close]

BLAST of MC06g0429 vs. NCBI nr
Match: XP_023516913.1 (replication protein A 32 kDa subunit B-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 500 bits (1287), Expect = 1.57e-177
Identity = 249/277 (89.89%), Postives = 262/277 (94.58%), Query Frame = 0


Query: 2   MYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDKS 61
           MYGSQFDGNAAFSGGGFMPSQTT APDHSLSPAKNRDVQALLPLTVKQINDAFLS+DDKS
Sbjct: 1   MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 62  SFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 121
           +FV++GVDVNNVKLVGMV NRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120

Query: 122 MYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSSMTTRP 181
           MYVRVHGHLKSFQGK TLNVFSIR VTDYNEITSHFIE IYVHFYNTRLR+Q SSMT +P
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRQQSSSMTPQP 180

Query: 182 QMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDTERGAHRDVIAQ 241
           QM NLSN+P++GYQ   SNQYSGQ GG D WK+LEQMVLDFLQLPSCDTERGAHRDVIAQ
Sbjct: 181 QMANLSNTPVRGYQTPISNQYSGQAGG-DGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQ 240

Query: 242 NLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278
           +L VP+EKL+PAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 HLKVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG 276

[Close]

BLAST of MC06g0429 vs. NCBI nr
Match: XP_008453602.1 (PREDICTED: replication protein A 32 kDa subunit B-like [Cucumis melo] >XP_008453603.1 PREDICTED: replication protein A 32 kDa subunit B-like [Cucumis melo] >XP_016901361.1 PREDICTED: replication protein A 32 kDa subunit B-like [Cucumis melo] >KAA0058271.1 replication protein A 32 kDa subunit B-like [Cucumis melo var. makuwa] >TYK11823.1 replication protein A 32 kDa subunit B-like [Cucumis melo var. makuwa])

HSP 1 Score: 500 bits (1287), Expect = 1.63e-177
Identity = 252/278 (90.65%), Postives = 263/278 (94.60%), Query Frame = 0


Query: 2   MYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDKS 61
           MY SQFDGNAAFSGGGFMPSQTTQAPDHS SPAKNRDVQALLPLTVKQINDAFLS+DDKS
Sbjct: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 62  SFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 121
           +FVI+GVDVNNVKLVGMV NRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120

Query: 122 MYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSS-MTTR 181
           MYVRVHGHLKSFQGK TLNVFSIR VTDYNEIT+HFIE IYVHFYNTRLRKQ SS MTT+
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180

Query: 182 PQMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDTERGAHRDVIA 241
           PQMTNLSN+P+KGYQA  +NQY+GQ GG D WKSLEQMVLDFLQLPSCD+ERGAHRDVIA
Sbjct: 181 PQMTNLSNTPVKGYQAPIANQYTGQAGG-DSWKSLEQMVLDFLQLPSCDSERGAHRDVIA 240

Query: 242 QNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278
           Q L VP+EKLIPAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 QQLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 277

[Close]

BLAST of MC06g0429 vs. NCBI nr
Match: XP_022922072.1 (replication protein A 32 kDa subunit B-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 499 bits (1286), Expect = 2.23e-177
Identity = 248/277 (89.53%), Postives = 263/277 (94.95%), Query Frame = 0


Query: 2   MYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDKS 61
           MYGSQFDGNAAFSGGGFMPSQTT APDHSLSPAKNRDVQALLPLTVKQINDAFLS+DDKS
Sbjct: 1   MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 62  SFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 121
           +FV++GVDVNNVKLVGMV NRAGRITDVTFALDDGTG+IDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGQIDCSKWVNEAADSNEVEGILDG 120

Query: 122 MYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSSMTTRP 181
           MYVRVHGHLKSFQGK TLNVFSIR VTDYNEITSHFIE IYVHFYNTRLR+Q SSMT +P
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRQQSSSMTPQP 180

Query: 182 QMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDTERGAHRDVIAQ 241
           QM NLSN+P++GYQ   SNQY+GQ GG D WK+LEQMVLDFLQLPSCDTERGAHRDVIAQ
Sbjct: 181 QMANLSNTPVRGYQTPISNQYTGQAGG-DGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQ 240

Query: 242 NLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278
           +LNVP+EKL+PAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 HLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG 276

[Close]

BLAST of MC06g0429 vs. NCBI nr
Match: XP_038880298.1 (replication protein A 32 kDa subunit B [Benincasa hispida])

HSP 1 Score: 499 bits (1286), Expect = 2.23e-177
Identity = 251/277 (90.61%), Postives = 259/277 (93.50%), Query Frame = 0


Query: 2   MYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDKS 61
           MYGSQFDGNAAFSGGGFMPSQTTQAPDHS SPAKNRDVQALLPLTVKQINDAFLS+DDKS
Sbjct: 1   MYGSQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 62  SFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 121
           +FVI+GVDVNNVKLVGMV NRAGRITDVTFALDDGTG IDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGWIDCSKWVNEAADSNEVEGILDG 120

Query: 122 MYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSSMTTRP 181
           MYVRVHGHLKSFQGK TLNVFSIR VTDYNEITSHFIE IYVHFYNTRLRKQ  S  T+P
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQGSSITQP 180

Query: 182 QMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDTERGAHRDVIAQ 241
           QM NLSN+PMKGYQA  SNQY+GQ GG D WKSLEQMVLDFLQLPSCD+ERGAHRDVIAQ
Sbjct: 181 QMANLSNTPMKGYQAPMSNQYTGQAGG-DGWKSLEQMVLDFLQLPSCDSERGAHRDVIAQ 240

Query: 242 NLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278
            L VP+EKLIPAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 QLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 276

[Close]

BLAST of MC06g0429 vs. ExPASy TrEMBL
Match: A0A6J1C122 (replication protein A 32 kDa subunit B isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007382 PE=3 SV=1)

HSP 1 Score: 558 bits (1439), Expect = 5.54e-201
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0


Query: 1   MMYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDK 60
           MMYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDK
Sbjct: 1   MMYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDK 60

Query: 61  SSFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILD 120
           SSFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILD
Sbjct: 61  SSFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILD 120

Query: 121 GMYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSSMTTR 180
           GMYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSSMTTR
Sbjct: 121 GMYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSSMTTR 180

Query: 181 PQMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDTERGAHRDVIA 240
           PQMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDTERGAHRDVIA
Sbjct: 181 PQMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDTERGAHRDVIA 240

Query: 241 QNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278
           QNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 QNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278

[Close]

BLAST of MC06g0429 vs. ExPASy TrEMBL
Match: A0A1S4DZE3 (replication protein A 32 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103494262 PE=3 SV=1)

HSP 1 Score: 500 bits (1287), Expect = 7.89e-178
Identity = 252/278 (90.65%), Postives = 263/278 (94.60%), Query Frame = 0


Query: 2   MYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDKS 61
           MY SQFDGNAAFSGGGFMPSQTTQAPDHS SPAKNRDVQALLPLTVKQINDAFLS+DDKS
Sbjct: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 62  SFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 121
           +FVI+GVDVNNVKLVGMV NRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120

Query: 122 MYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSS-MTTR 181
           MYVRVHGHLKSFQGK TLNVFSIR VTDYNEIT+HFIE IYVHFYNTRLRKQ SS MTT+
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180

Query: 182 PQMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDTERGAHRDVIA 241
           PQMTNLSN+P+KGYQA  +NQY+GQ GG D WKSLEQMVLDFLQLPSCD+ERGAHRDVIA
Sbjct: 181 PQMTNLSNTPVKGYQAPIANQYTGQAGG-DSWKSLEQMVLDFLQLPSCDSERGAHRDVIA 240

Query: 242 QNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278
           Q L VP+EKLIPAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 QQLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 277

[Close]

BLAST of MC06g0429 vs. ExPASy TrEMBL
Match: A0A5D3CIS3 (Replication protein A 32 kDa subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00360 PE=3 SV=1)

HSP 1 Score: 500 bits (1287), Expect = 7.89e-178
Identity = 252/278 (90.65%), Postives = 263/278 (94.60%), Query Frame = 0


Query: 2   MYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDKS 61
           MY SQFDGNAAFSGGGFMPSQTTQAPDHS SPAKNRDVQALLPLTVKQINDAFLS+DDKS
Sbjct: 1   MYASQFDGNAAFSGGGFMPSQTTQAPDHSFSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 62  SFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 121
           +FVI+GVDVNNVKLVGMV NRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVIDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 120

Query: 122 MYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSS-MTTR 181
           MYVRVHGHLKSFQGK TLNVFSIR VTDYNEIT+HFIE IYVHFYNTRLRKQ SS MTT+
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITNHFIESIYVHFYNTRLRKQQSSSMTTQ 180

Query: 182 PQMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDTERGAHRDVIA 241
           PQMTNLSN+P+KGYQA  +NQY+GQ GG D WKSLEQMVLDFLQLPSCD+ERGAHRDVIA
Sbjct: 181 PQMTNLSNTPVKGYQAPIANQYTGQAGG-DSWKSLEQMVLDFLQLPSCDSERGAHRDVIA 240

Query: 242 QNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278
           Q L VP+EKLIPAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 QQLKVPLEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 277

[Close]

BLAST of MC06g0429 vs. ExPASy TrEMBL
Match: A0A6J1E235 (replication protein A 32 kDa subunit B-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430133 PE=3 SV=1)

HSP 1 Score: 499 bits (1286), Expect = 1.08e-177
Identity = 248/277 (89.53%), Postives = 263/277 (94.95%), Query Frame = 0


Query: 2   MYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDKS 61
           MYGSQFDGNAAFSGGGFMPSQTT APDHSLSPAKNRDVQALLPLTVKQINDAFLS+DDKS
Sbjct: 1   MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 62  SFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 121
           +FV++GVDVNNVKLVGMV NRAGRITDVTFALDDGTG+IDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGQIDCSKWVNEAADSNEVEGILDG 120

Query: 122 MYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSSMTTRP 181
           MYVRVHGHLKSFQGK TLNVFSIR VTDYNEITSHFIE IYVHFYNTRLR+Q SSMT +P
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRQQSSSMTPQP 180

Query: 182 QMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDTERGAHRDVIAQ 241
           QM NLSN+P++GYQ   SNQY+GQ GG D WK+LEQMVLDFLQLPSCDTERGAHRDVIAQ
Sbjct: 181 QMANLSNTPVRGYQTPISNQYTGQAGG-DGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQ 240

Query: 242 NLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278
           +LNVP+EKL+PAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 HLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG 276

[Close]

BLAST of MC06g0429 vs. ExPASy TrEMBL
Match: A0A6J1E347 (replication protein A 32 kDa subunit B-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430133 PE=3 SV=1)

HSP 1 Score: 497 bits (1279), Expect = 1.31e-176
Identity = 249/278 (89.57%), Postives = 263/278 (94.60%), Query Frame = 0


Query: 2   MYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDKS 61
           MYGSQFDGNAAFSGGGFMPSQTT APDHSLSPAKNRDVQALLPLTVKQINDAFLS+DDKS
Sbjct: 1   MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKS 60

Query: 62  SFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 121
           +FV++GVDVNNVKLVGMV NRAGRITDVTFALDDGTG+IDCSKWVNEAADSNEVEGILDG
Sbjct: 61  NFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGQIDCSKWVNEAADSNEVEGILDG 120

Query: 122 MYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSS-MTTR 181
           MYVRVHGHLKSFQGK TLNVFSIR VTDYNEITSHFIE IYVHFYNTRLRKQ SS MT +
Sbjct: 121 MYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQ 180

Query: 182 PQMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDTERGAHRDVIA 241
           PQM NLSN+P++GYQ   SNQY+GQ GG D WK+LEQMVLDFLQLPSCDTERGAHRDVIA
Sbjct: 181 PQMANLSNTPVRGYQTPISNQYTGQAGG-DGWKNLEQMVLDFLQLPSCDTERGAHRDVIA 240

Query: 242 QNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTANG 278
           Q+LNVP+EKL+PAMKNLEEEGLIYSTTDDYHFKSTANG
Sbjct: 241 QHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG 277

[Close]

BLAST of MC06g0429 vs. TAIR 10
Match: AT3G02920.1 (Replication protein A, subunit RPA32 )

HSP 1 Score: 258.5 bits (659), Expect = 6.3e-69
Identity = 138/281 (49.11%), Postives = 183/281 (65.12%), Query Frame = 0


Query: 2   MYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDKS 61
           MYG  FDGNAAF+GGGFMPSQ T     S S  KNRDV+ LLPLT+KQ++ A  S   +S
Sbjct: 1   MYGGDFDGNAAFAGGGFMPSQATTQAHESSSSLKNRDVRTLLPLTLKQLSSA--STTGES 60

Query: 62  SFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDG 121
           +F I+GVD+  V +VG +S    RIT V F +DDGTG +DC +W +   ++ E+E +  G
Sbjct: 61  NFSIDGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLG 120

Query: 122 MYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRK---QHSSMT 181
           MYVR+HGHLK FQGK ++NVFS+R VTD+NEI  HF EC+YVH YNT+LR       + T
Sbjct: 121 MYVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDTAT 180

Query: 182 TRPQMT-NLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLP-SCDTERGAHR 241
            RPQM  +   +P K YQ   SNQ+  Q    D    ++Q VL++L  P    +E G H 
Sbjct: 181 PRPQMPYSTMPTPAKPYQTGPSNQFPNQF--NDSMHGVKQTVLNYLNQPMHIVSEAGVHC 240

Query: 242 DVIAQNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTAN 278
           D+IA+ L +P+ ++  A++ L  +G IYST D+  FKSTAN
Sbjct: 241 DIIARELRIPLLQVKEALEQLSNDGCIYSTLDETCFKSTAN 277

[Close]

BLAST of MC06g0429 vs. TAIR 10
Match: AT2G24490.1 (replicon protein A2 )

HSP 1 Score: 255.8 bits (652), Expect = 4.1e-68
Identity = 130/275 (47.27%), Postives = 181/275 (65.82%), Query Frame = 0


Query: 1   MMYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDK 60
           M   SQF+ N+ FSGGGFM SQ +QA + S S AKNRD Q L+P+TVKQI + F S+ +K
Sbjct: 1   MFSSSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEK 60

Query: 61  SSFVINGVDVNNVKLVGMVSNR-AGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGIL 120
           S  VING+ + NV LVG+V ++   ++T+V F LDDGTGRIDC +WV+E  D+ E+E + 
Sbjct: 61  SGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVR 120

Query: 121 DGMYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSSMTT 180
           DG YVR+ GHLK+FQGKT L VFS+R + D+NE+T H+IECI+ +  N+  ++Q     T
Sbjct: 121 DGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVT 180

Query: 181 RPQMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDT-ERGAHRDV 240
           +   T              +   S Q   G+  K+L+ M+LD+L+ P+C   ++G H D 
Sbjct: 181 QSVNTTFQGGSNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPACTARQQGIHIDE 240

Query: 241 IAQNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFK 274
           IAQ L +P  KL   +++LE +GLIYST D+YHFK
Sbjct: 241 IAQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275

[Close]

BLAST of MC06g0429 vs. TAIR 10
Match: AT2G24490.2 (replicon protein A2 )

HSP 1 Score: 255.8 bits (652), Expect = 4.1e-68
Identity = 130/275 (47.27%), Postives = 181/275 (65.82%), Query Frame = 0


Query: 1   MMYGSQFDGNAAFSGGGFMPSQTTQAPDHSLSPAKNRDVQALLPLTVKQINDAFLSNDDK 60
           M   SQF+ N+ FSGGGFM SQ +QA + S S AKNRD Q L+P+TVKQI + F S+ +K
Sbjct: 1   MFSSSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEK 60

Query: 61  SSFVINGVDVNNVKLVGMVSNR-AGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGIL 120
           S  VING+ + NV LVG+V ++   ++T+V F LDDGTGRIDC +WV+E  D+ E+E + 
Sbjct: 61  SGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVR 120

Query: 121 DGMYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECIYVHFYNTRLRKQHSSMTT 180
           DG YVR+ GHLK+FQGKT L VFS+R + D+NE+T H+IECI+ +  N+  ++Q     T
Sbjct: 121 DGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVT 180

Query: 181 RPQMTNLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQMVLDFLQLPSCDT-ERGAHRDV 240
           +   T              +   S Q   G+  K+L+ M+LD+L+ P+C   ++G H D 
Sbjct: 181 QSVNTTFQGGSNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPACTARQQGIHIDE 240

Query: 241 IAQNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFK 274
           IAQ L +P  KL   +++LE +GLIYST D+YHFK
Sbjct: 241 IAQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275

[Close]

BLAST of MC06g0429 vs. TAIR 10
Match: AT3G02920.2 (Replication protein A, subunit RPA32 )

HSP 1 Score: 248.1 bits (632), Expect = 8.6e-66
Identity = 142/301 (47.18%), Postives = 189/301 (62.79%), Query Frame = 0


Query: 2   MYGSQFDGNAAFSGGGFMPSQ-TTQAPDHS---------------LSPAK----NRDVQA 61
           MYG  FDGNAAF+GGGFMPSQ TTQA + S               +S AK    NRDV+ 
Sbjct: 1   MYGGDFDGNAAFAGGGFMPSQATTQAHESSSSLKVYVSDSRRFSGISAAKSSIRNRDVRT 60

Query: 62  LLPLTVKQINDAFLSNDDKSSFVINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRID 121
           LLPLT+KQ++ A  S   +S+F I+GVD+  V +VG +S    RIT V F +DDGTG +D
Sbjct: 61  LLPLTLKQLSSA--STTGESNFSIDGVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVD 120

Query: 122 CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKTTLNVFSIRSVTDYNEITSHFIECI 181
           C +W +   ++ E+E +  GMYVR+HGHLK FQGK ++NVFS+R VTD+NEI  HF EC+
Sbjct: 121 CVRWCHARQETEEMEAVKLGMYVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECM 180

Query: 182 YVHFYNTRLRK---QHSSMTTRPQMT-NLSNSPMKGYQAASSNQYSGQVGGGDRWKSLEQ 241
           YVH YNT+LR       + T RPQM  +   +P K YQ   SNQ+  Q    D    ++Q
Sbjct: 181 YVHMYNTKLRGGSITQDTATPRPQMPYSTMPTPAKPYQTGPSNQFPNQF--NDSMHGVKQ 240

Query: 242 MVLDFLQLP-SCDTERGAHRDVIAQNLNVPMEKLIPAMKNLEEEGLIYSTTDDYHFKSTA 278
            VL++L  P    +E G H D+IA+ L +P+ ++  A++ L  +G IYST D+  FKSTA
Sbjct: 241 TVLNYLNQPMHIVSEAGVHCDIIARELRIPLLQVKEALEQLSNDGCIYSTLDETCFKSTA 297

[Close]

BLAST of MC06g0429 vs. TAIR 10
Match: AT1G07130.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 45.4 bits (106), Expect = 8.4e-05
Identity = 33/136 (24.26%), Postives = 57/136 (41.91%), Query Frame = 0


Query: 45  LTVKQINDAFLSNDDKSSF-VINGVDVNNVKLVGMVSNRAGRITDVTFALDDGTGRIDCS 104
           L  + I     S  + +SF ++ G  V+ V++VG + +R      + F +DDGTG + C 
Sbjct: 12  LVARDIQRLTQSPTESNSFSLLGGACVSRVEIVGTIVSRDLTPKFLKFGVDDGTGCVTCV 71

Query: 105 KWVNEAADS------------------NEVEGILDGMYVRVHGHLKSFQGKTTLNVFSIR 162
            W+N+   S                   +   I  G   RV G + S++G   +      
Sbjct: 72  MWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRGVMQITANVAV 131

The following BLAST results are available for this feature:

BLAST of MC06g0429 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFJ8	8.9e-68	49.11	Replication protein A 32 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA2B ...	[more]
Q9ZQ19	5.8e-67	47.27	Replication protein A 32 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA2A ...	[more]
Q6H7J5	1.4e-49	37.85	Replication protein A 32 kDa subunit B OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q6K9U2	4.9e-42	38.52	Replication protein A 32 kDa subunit A OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q92373	1.8e-23	31.62	Replication factor A protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of MC06g0429 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135425.1	1.14e-200	100.00	replication protein A 32 kDa subunit B isoform X1 [Momordica charantia]	[more]
XP_023516913.1	1.57e-177	89.89	replication protein A 32 kDa subunit B-like isoform X2 [Cucurbita pepo subsp. pe...	[more]
XP_008453602.1	1.63e-177	90.65	PREDICTED: replication protein A 32 kDa subunit B-like [Cucumis melo] >XP_008453...	[more]
XP_022922072.1	2.23e-177	89.53	replication protein A 32 kDa subunit B-like isoform X2 [Cucurbita moschata]	[more]
XP_038880298.1	2.23e-177	90.61	replication protein A 32 kDa subunit B [Benincasa hispida]	[more]

BLAST of MC06g0429 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C122	5.54e-201	100.00	replication protein A 32 kDa subunit B isoform X1 OS=Momordica charantia OX=3673...	[more]
A0A1S4DZE3	7.89e-178	90.65	replication protein A 32 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103494...	[more]
A0A5D3CIS3	7.89e-178	90.65	Replication protein A 32 kDa subunit B-like OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1E235	1.08e-177	89.53	replication protein A 32 kDa subunit B-like isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1E347	1.31e-176	89.57	replication protein A 32 kDa subunit B-like isoform X1 OS=Cucurbita moschata OX=...	[more]

BLAST of MC06g0429 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02920.1	6.3e-69	49.11	Replication protein A, subunit RPA32	[more]
AT2G24490.1	4.1e-68	47.27	replicon protein A2	[more]
AT2G24490.2	4.1e-68	47.27	replicon protein A2	[more]
AT3G02920.2	8.6e-66	47.18	Replication protein A, subunit RPA32	[more]
AT1G07130.1	8.4e-05	24.26	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014646	Replication factor A protein 2	PIRSF	PIRSF036949	RPA32	coord: 2..276 e-value: 1.7E-77 score: 258.1
IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	PFAM	PF01336	tRNA_anti-codon	coord: 73..145 e-value: 1.4E-8 score: 34.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 210..277 e-value: 4.5E-16 score: 60.3
IPR014892	Replication protein A, C-terminal	PFAM	PF08784	RPA_C	coord: 164..269 e-value: 2.0E-15 score: 57.3
None	No IPR available	GENE3D	2.40.50.140		coord: 34..169 e-value: 2.1E-40 score: 139.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..33
None	No IPR available	PANTHER	PTHR13989:SF42	REPLICATION PROTEIN A 32 KDA SUBUNIT A-LIKE	coord: 4..278
None	No IPR available	CDD	cd04478	RPA2_DBD_D	coord: 72..165 e-value: 6.94798E-39 score: 129.642
IPR040260	Replication factor A protein-like	PANTHER	PTHR13989	REPLICATION PROTEIN A-RELATED	coord: 4..278
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 42..169
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 212..276

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0429.1	MC06g0429.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0000781	chromosome, telomeric region
cellular_component	GO:0005662	DNA replication factor A complex
cellular_component	GO:0035861	site of double-strand break
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding