MC06g0359 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0359
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DUF4228 domain protein
Location	MC06: 2894658 .. 2894885 (-)
RNA-Seq Expression	MC06g0359
Synteny	MC06g0359

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTTATCCTTGGACGGAAAATTGGAGAGCTACACGAAGCCAGTGAAAGCTGCGGAATTAATGATAGAGAATTCCGGCAAATTCCTCTGCGATTCCGGCGATCTCAAAGTCGGCCACCGGATTCAAGGCCTTCTGCCTGACGAAGATCTCGAGTGCCGCCGATTGTACTTTCTCCTCCCGATGGATCTGCTCTACTCCGTGCTAACGCTCGAGGAAATGAGTTCTCTC

mRNA sequence

GTCTTATCCTTGGACGGAAAATTGGAGAGCTACACGAAGCCAGTGAAAGCTGCGGAATTAATGATAGAGAATTCCGGCAAATTCCTCTGCGATTCCGGCGATCTCAAAGTCGGCCACCGGATTCAAGGCCTTCTGCCTGACGAAGATCTCGAGTGCCGCCGATTGTACTTTCTCCTCCCGATGGATCTGCTCTACTCCGTGCTAACGCTCGAGGAAATGAGTTCTCTC

Coding sequence (CDS)

GTCTTATCCTTGGACGGAAAATTGGAGAGCTACACGAAGCCAGTGAAAGCTGCGGAATTAATGATAGAGAATTCCGGCAAATTCCTCTGCGATTCCGGCGATCTCAAAGTCGGCCACCGGATTCAAGGCCTTCTGCCTGACGAAGATCTCGAGTGCCGCCGATTGTACTTTCTCCTCCCGATGGATCTGCTCTACTCCGTGCTAACGCTCGAGGAAATGAGTTCTCTC

Protein sequence

VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLPMDLLYSVLTLEEMSSL

Homology

[Close]

BLAST of MC06g0359 vs. NCBI nr
Match: XP_022135244.1 (uncharacterized protein LOC111007254 [Momordica charantia])

HSP 1 Score: 151 bits (381), Expect = 2.22e-44
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1   VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLP 60
           VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLP
Sbjct: 42  VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLP 101

Query: 61  MDLLYSVLTLEEMSSL 76
           MDLLYSVLTLEEMSSL
Sbjct: 102 MDLLYSVLTLEEMSSL 117

[Close]

BLAST of MC06g0359 vs. NCBI nr
Match: XP_038879989.1 (uncharacterized protein LOC120071684 [Benincasa hispida])

HSP 1 Score: 139 bits (351), Expect = 3.81e-40
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1  VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLP 60
          VLSLDGKL+S+TKPVKAAELMIE+SGKFLCDS DLK+GHRIQGLLPDEDLE RRLYFLLP
Sbjct: 19 VLSLDGKLQSFTKPVKAAELMIEHSGKFLCDSSDLKIGHRIQGLLPDEDLEWRRLYFLLP 78

Query: 61 MDLLYSVLTLEEMSSL 76
          MDLLYSVLTLEEMSSL
Sbjct: 79 MDLLYSVLTLEEMSSL 94

[Close]

BLAST of MC06g0359 vs. NCBI nr
Match: KAG6589641.1 (hypothetical protein SDJN03_15064, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138 bits (347), Expect = 1.15e-39
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLP 60
          VLSLDGKL+SY KPV+AAELMIE+SGKFLCDS DL VGHRIQGLLPDEDLECRRLYFLLP
Sbjct: 9  VLSLDGKLQSYRKPVQAAELMIEHSGKFLCDSADLSVGHRIQGLLPDEDLECRRLYFLLP 68

Query: 61 MDLLYSVLTLEEMSSL 76
          MDLLYSVLTLEEM SL
Sbjct: 69 MDLLYSVLTLEEMRSL 84

[Close]

BLAST of MC06g0359 vs. NCBI nr
Match: XP_023516747.1 (uncharacterized protein LOC111780552 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138 bits (347), Expect = 1.15e-39
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLP 60
          VLSLDGKL+SY KPV+AAELMIE+SGKFLCDS DL VGHRIQGLLPDEDLECRRLYFLLP
Sbjct: 9  VLSLDGKLQSYRKPVQAAELMIEHSGKFLCDSADLSVGHRIQGLLPDEDLECRRLYFLLP 68

Query: 61 MDLLYSVLTLEEMSSL 76
          MDLLYSVLTLEEM SL
Sbjct: 69 MDLLYSVLTLEEMRSL 84

[Close]

BLAST of MC06g0359 vs. NCBI nr
Match: KAG7023330.1 (hypothetical protein SDJN02_14355, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138 bits (347), Expect = 1.54e-39
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLP 60
          VLSLDGKL+SY KPV+AAELMIE+SGKFLCDS DL VGHRIQGLLPDEDLECRRLYFLLP
Sbjct: 19 VLSLDGKLQSYRKPVQAAELMIEHSGKFLCDSADLSVGHRIQGLLPDEDLECRRLYFLLP 78

Query: 61 MDLLYSVLTLEEMSSL 76
          MDLLYSVLTLEEM SL
Sbjct: 79 MDLLYSVLTLEEMRSL 94

[Close]

BLAST of MC06g0359 vs. ExPASy TrEMBL
Match: A0A6J1C0W6 (uncharacterized protein LOC111007254 OS=Momordica charantia OX=3673 GN=LOC111007254 PE=4 SV=1)

HSP 1 Score: 151 bits (381), Expect = 1.08e-44
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1   VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLP 60
           VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLP
Sbjct: 42  VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLP 101

Query: 61  MDLLYSVLTLEEMSSL 76
           MDLLYSVLTLEEMSSL
Sbjct: 102 MDLLYSVLTLEEMSSL 117

[Close]

BLAST of MC06g0359 vs. ExPASy TrEMBL
Match: A0A6J1E2A0 (uncharacterized protein LOC111429917 OS=Cucurbita moschata OX=3662 GN=LOC111429917 PE=4 SV=1)

HSP 1 Score: 137 bits (345), Expect = 1.50e-39
Identity = 68/76 (89.47%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLP 60
          VLSLDGKL+SY KPV+AAELMIE+SGKFLCDS DL VGHRIQGLLPDEDLECRRLYFLLP
Sbjct: 19 VLSLDGKLQSYRKPVQAAELMIEHSGKFLCDSADLSVGHRIQGLLPDEDLECRRLYFLLP 78

Query: 61 MDLLYSVLTLEEMSSL 76
          MDLLYSVLT+EEM SL
Sbjct: 79 MDLLYSVLTIEEMRSL 94

[Close]

BLAST of MC06g0359 vs. ExPASy TrEMBL
Match: A0A6J1JH13 (uncharacterized protein LOC111485040 OS=Cucurbita maxima OX=3661 GN=LOC111485040 PE=4 SV=1)

HSP 1 Score: 137 bits (344), Expect = 2.13e-39
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLP 60
          VLSLDGKL+SYTK V+AAELMIE+SGKFLCDS DL VGHRIQGLLPDEDLECRRLYFLLP
Sbjct: 19 VLSLDGKLQSYTKRVQAAELMIEHSGKFLCDSADLSVGHRIQGLLPDEDLECRRLYFLLP 78

Query: 61 MDLLYSVLTLEEMSSL 76
          MDLLYSVLTLEEM SL
Sbjct: 79 MDLLYSVLTLEEMRSL 94

[Close]

BLAST of MC06g0359 vs. ExPASy TrEMBL
Match: A0A5D3E1W3 (DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46571G00010 PE=4 SV=1)

HSP 1 Score: 135 bits (340), Expect = 8.65e-39
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLP 60
          VLSLDG L+S+TKPV AAELMIE+SGKFLCDS DLKVGHRIQGLLPDEDLE RRLYFLLP
Sbjct: 19 VLSLDGTLQSFTKPVTAAELMIEHSGKFLCDSSDLKVGHRIQGLLPDEDLEWRRLYFLLP 78

Query: 61 MDLLYSVLTLEEMSSL 76
          MDLLYSVLTLEEMSSL
Sbjct: 79 MDLLYSVLTLEEMSSL 94

[Close]

BLAST of MC06g0359 vs. ExPASy TrEMBL
Match: A0A1S3BY23 (uncharacterized protein LOC103494340 OS=Cucumis melo OX=3656 GN=LOC103494340 PE=4 SV=1)

HSP 1 Score: 135 bits (340), Expect = 8.65e-39
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLP 60
          VLSLDG L+S+TKPV AAELMIE+SGKFLCDS DLKVGHRIQGLLPDEDLE RRLYFLLP
Sbjct: 19 VLSLDGTLQSFTKPVTAAELMIEHSGKFLCDSSDLKVGHRIQGLLPDEDLEWRRLYFLLP 78

Query: 61 MDLLYSVLTLEEMSSL 76
          MDLLYSVLTLEEMSSL
Sbjct: 79 MDLLYSVLTLEEMSSL 94

[Close]

BLAST of MC06g0359 vs. TAIR 10
Match: AT1G18290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: root; Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-12
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 6  GKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRR-LYFLLPMDLL 65
          G LE ++KP+K ++++  +SG F+ DS  L++ HR+  + PDE L  RR LY LLP D+L
Sbjct: 29 GTLEVFSKPIKTSDIVSRHSGHFITDSTLLQISHRVTAVSPDEYLRPRRHLYLLLPTDML 88

Query: 66 YSVLTLEEMS 75
          +SVLT EE+S
Sbjct: 89 FSVLTQEELS 98

[Close]

BLAST of MC06g0359 vs. TAIR 10
Match: AT5G66580.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 24/76 (31.58%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 1  VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLP 60
          ++ LDG L+ ++ PVK  +++ +N   F+C+S ++     +  +  +E+L   +LYF+LP
Sbjct: 17 LILLDGTLQEFSSPVKVWQILQKNPTSFVCNSDEMDFDDAVSAVAGNEELRSGQLYFVLP 76

Query: 61 MDLLYSVLTLEEMSSL 77
          +  L   L  EEM++L
Sbjct: 77 LTWLNHPLRAEEMAAL 92

[Close]

BLAST of MC06g0359 vs. TAIR 10
Match: AT3G50800.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66580.1); Has 249 Blast hits to 249 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-06
Identity = 24/72 (33.33%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 5  DGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLPMDLL 64
          DG L+ ++ PVK  +++ +N   F+C+S D+     +  +   EDL    LYF+LP+  L
Sbjct: 21 DGTLQEFSTPVKVWQILQKNPTSFVCNSDDMDFDDAVLAVPGSEDLRPGELYFVLPLTWL 80

Query: 65 YSVLTLEEMSSL 77
             L  +EM++L
Sbjct: 81 NHPLRADEMAAL 92

[Close]

BLAST of MC06g0359 vs. TAIR 10
Match: AT4G37240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 2.1e-06
Identity = 22/72 (30.56%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 5  DGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECRRLYFLLPMDLL 64
          DG++  +  PVK   ++++    F+C+S D+     +  +  DE+L+  ++YF LP+  L
Sbjct: 21 DGRMMEFANPVKVGYVLLKYPMCFICNSDDMDFDDAVAAISADEELQLGQIYFALPLCWL 80

Query: 65 YSVLTLEEMSSL 77
             L  EEM++L
Sbjct: 81 RQPLKAEEMAAL 92

[Close]

BLAST of MC06g0359 vs. TAIR 10
Match: AT5G17350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 3.9e-05
Identity = 26/78 (33.33%), Postives = 41/78 (52.56%), Query Frame = 0


Query: 1  VLSLDGKLESYTKPVKAAELMIENSGKFLCDSGDLKVGHRIQGLLPDEDLECR--RLYFL 60
          V+  DG + +   P+KAAELM+E    FL D+  LK+G +   L  D+DL+ +   +Y  
Sbjct: 22 VILPDGGVRNIHAPMKAAELMMEIPSFFLVDAKSLKIGRKFCPLAADDDLQIKGCHVYVA 81

Query: 61 LPMDLLYSVLTLEEMSSL 77
           PM    S     +++ L
Sbjct: 82 FPMTRATSAANASDLARL 99

The following BLAST results are available for this feature:

BLAST of MC06g0359 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g0359 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135244.1	2.22e-44	100.00	uncharacterized protein LOC111007254 [Momordica charantia]	[more]
XP_038879989.1	3.81e-40	92.11	uncharacterized protein LOC120071684 [Benincasa hispida]	[more]
KAG6589641.1	1.15e-39	90.79	hypothetical protein SDJN03_15064, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023516747.1	1.15e-39	90.79	uncharacterized protein LOC111780552 [Cucurbita pepo subsp. pepo]	[more]
KAG7023330.1	1.54e-39	90.79	hypothetical protein SDJN02_14355, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MC06g0359 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C0W6	1.08e-44	100.00	uncharacterized protein LOC111007254 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1E2A0	1.50e-39	89.47	uncharacterized protein LOC111429917 OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]
A0A6J1JH13	2.13e-39	90.79	uncharacterized protein LOC111485040 OS=Cucurbita maxima OX=3661 GN=LOC111485040...	[more]
A0A5D3E1W3	8.65e-39	90.79	DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A1S3BY23	8.65e-39	90.79	uncharacterized protein LOC103494340 OS=Cucumis melo OX=3656 GN=LOC103494340 PE=...	[more]

BLAST of MC06g0359 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18290.1	1.1e-12	48.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT5G66580.1	1.1e-07	31.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT3G50800.1	1.2e-06	33.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT4G37240.1	2.1e-06	30.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT5G17350.1	3.9e-05	33.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..76 e-value: 3.5E-20 score: 73.2
None	No IPR available	PANTHER	PTHR33052:SF19	DUF4228 DOMAIN PROTEIN	coord: 1..75
None	No IPR available	PANTHER	PTHR33052	DUF4228 DOMAIN PROTEIN-RELATED	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0359.1	MC06g0359.1	mRNA