MC06g0346 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0346
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Pentatricopeptide repeat-containing protein
Location	MC06: 2793266 .. 2793520 (-)
RNA-Seq Expression	MC06g0346
Synteny	MC06g0346

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAACATATACTTGAGAGCTATTTGCCTTGCAAATAAGTCAACCGAGCTCTTAAATACATTTGTTGTAATGCTTCAAACCAATTGTCAATCTGATGTTATTACCCTGAATACAGTTATCAAGGGATTTTGTCATATTGGAAGCATTGAAAAAGCTCTAAAGGTATTAAATGATATGATGATTTGTCAATTTTGTGCCCCTGATTATGTGAACTTCACGACTATTATATATGGGTTACTGAATGTTGGGAGGATC

mRNA sequence

TACAACATATACTTGAGAGCTATTTGCCTTGCAAATAAGTCAACCGAGCTCTTAAATACATTTGTTGTAATGCTTCAAACCAATTGTCAATCTGATGTTATTACCCTGAATACAGTTATCAAGGGATTTTGTCATATTGGAAGCATTGAAAAAGCTCTAAAGGTATTAAATGATATGATGATTTGTCAATTTTGTGCCCCTGATTATGTGAACTTCACGACTATTATATATGGGTTACTGAATGTTGGGAGGATC

Coding sequence (CDS)

TACAACATATACTTGAGAGCTATTTGCCTTGCAAATAAGTCAACCGAGCTCTTAAATACATTTGTTGTAATGCTTCAAACCAATTGTCAATCTGATGTTATTACCCTGAATACAGTTATCAAGGGATTTTGTCATATTGGAAGCATTGAAAAAGCTCTAAAGGTATTAAATGATATGATGATTTGTCAATTTTGTGCCCCTGATTATGTGAACTTCACGACTATTATATATGGGTTACTGAATGTTGGGAGGATC

Protein sequence

YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMMICQFCAPDYVNFTTIIYGLLNVGRI

Homology

[Close]

BLAST of MC06g0346 vs. ExPASy Swiss-Prot
Match: Q9LSK8 (Pentatricopeptide repeat-containing protein At3g18020 OS=Arabidopsis thaliana OX=3702 GN=At3g18020 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.0e-19
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           YNIYLR +C+ +  TE+LN  V MLQ +C+ D  TLNTVI G C +G ++ A+KVL+DMM
Sbjct: 415 YNIYLRGLCVMDNPTEILNVLVSMLQGDCRPDEYTLNTVINGLCKMGRVDDAMKVLDDMM 474

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGR 85
             +FCAPD V   T++ GLL  GR
Sbjct: 475 TGKFCAPDAVTLNTVMCGLLAQGR 498

[Close]

BLAST of MC06g0346 vs. ExPASy Swiss-Prot
Match: Q9ZUE9 (Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana OX=3702 GN=At2g06000 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-09
Identity = 28/85 (32.94%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           +NI +R +C   K+ + L    VM    C+ D++T NT+I+GFC    + KA ++  D+ 
Sbjct: 209 FNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVK 268

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 86
               C+PD V +T++I G    G++
Sbjct: 269 SGSVCSPDVVTYTSMISGYCKAGKM 293

[Close]

BLAST of MC06g0346 vs. ExPASy Swiss-Prot
Match: Q9LFF1 (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-06
Identity = 28/85 (32.94%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           +N  +  +C A      +    VMLQ     DV T N+VI G C +G +++A++VL D M
Sbjct: 298 FNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVL-DQM 357

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 86
           I + C+P+ V + T+I  L    ++
Sbjct: 358 ITRDCSPNTVTYNTLISTLCKENQV 381

[Close]

BLAST of MC06g0346 vs. ExPASy Swiss-Prot
Match: Q3EDF8 (Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX=3702 GN=At1g09900 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-06
Identity = 27/85 (31.76%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           YN  LR++C + K  + +     MLQ +C  DVIT   +I+  C    +  A+K+L++M 
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMR 266

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 86
             + C PD V +  ++ G+   GR+
Sbjct: 267 -DRGCTPDVVTYNVLVNGICKEGRL 290

[Close]

BLAST of MC06g0346 vs. ExPASy Swiss-Prot
Match: Q9LQ15 (Pentatricopeptide repeat-containing protein At1g62914, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62914 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.9e-06
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           YNI +   C  ++ +  L     M++   + D++TLN+++ GFCH   I  A+  L D M
Sbjct: 116 YNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAV-ALVDQM 175

Query: 61  ICQFCAPDYVNFTTIIYGL 80
           +     PD V FTT+I+GL
Sbjct: 176 VEMGYKPDTVTFTTLIHGL 193

[Close]

BLAST of MC06g0346 vs. NCBI nr
Match: XP_022134613.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g18020 [Momordica charantia])

HSP 1 Score: 173 bits (438), Expect = 1.32e-48
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM
Sbjct: 390 YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 449

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 85
           ICQFCAPDYVNFTTIIYGLLNVGRI
Sbjct: 450 ICQFCAPDYVNFTTIIYGLLNVGRI 474

[Close]

BLAST of MC06g0346 vs. NCBI nr
Match: XP_022132241.1 (pentatricopeptide repeat-containing protein At3g18020-like [Momordica charantia] >XP_022132242.1 pentatricopeptide repeat-containing protein At3g18020-like [Momordica charantia] >XP_022132243.1 pentatricopeptide repeat-containing protein At3g18020-like [Momordica charantia] >XP_022132244.1 pentatricopeptide repeat-containing protein At3g18020-like [Momordica charantia] >XP_022132246.1 pentatricopeptide repeat-containing protein At3g18020-like [Momordica charantia])

HSP 1 Score: 142 bits (359), Expect = 2.44e-37
Identity = 71/85 (83.53%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           YNIYLRA+CL N STELLNT VVMLQTNCQ DVITLN VIKGFC  GSIE+ALKVLNDMM
Sbjct: 424 YNIYLRAVCLTNNSTELLNTLVVMLQTNCQPDVITLNIVIKGFCQTGSIEEALKVLNDMM 483

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 85
           I +FC PDYV FTTII GLLNVGRI
Sbjct: 484 IGKFCVPDYVTFTTIICGLLNVGRI 508

[Close]

BLAST of MC06g0346 vs. NCBI nr
Match: XP_011649150.1 (pentatricopeptide repeat-containing protein At3g18020 [Cucumis sativus] >KGN63871.1 hypothetical protein Csa_014101 [Cucumis sativus])

HSP 1 Score: 139 bits (350), Expect = 3.84e-36
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           YNIYLRA+CL N STELLNT V MLQTNCQ DVITLNTVIKGFC +GSIE+ALKVLNDM+
Sbjct: 414 YNIYLRAVCLTNNSTELLNTLVEMLQTNCQPDVITLNTVIKGFCKVGSIEEALKVLNDMI 473

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 85
             +FC PD+V FTTII+GLLNVGRI
Sbjct: 474 GGKFCTPDHVTFTTIIFGLLNVGRI 498

[Close]

BLAST of MC06g0346 vs. NCBI nr
Match: XP_008453476.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Cucumis melo] >XP_008453477.1 PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Cucumis melo] >XP_008453478.1 PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Cucumis melo] >XP_016901429.1 PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Cucumis melo])

HSP 1 Score: 137 bits (345), Expect = 1.90e-35
Identity = 67/85 (78.82%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           YNIYLRA+CL N STELLNT VVMLQ+NCQ DVITLNTVIKGFC +GSIE+ALKVLNDM+
Sbjct: 414 YNIYLRAVCLTNNSTELLNTLVVMLQSNCQPDVITLNTVIKGFCKVGSIEEALKVLNDMI 473

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 85
             +FC PD+V FTTI+ GLLNVGRI
Sbjct: 474 GGKFCTPDHVTFTTILCGLLNVGRI 498

[Close]

BLAST of MC06g0346 vs. NCBI nr
Match: KAG6589634.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (345), Expect = 2.05e-35
Identity = 68/85 (80.00%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           YNIYLRA+CL N STELLNT VVMLQTNC  DVITLNTVIKGFC +GSIE+ALKVL+DMM
Sbjct: 418 YNIYLRAVCLTNNSTELLNTLVVMLQTNCHPDVITLNTVIKGFCKVGSIEEALKVLDDMM 477

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 85
           I + C PD+V FTTII GLLNVGRI
Sbjct: 478 IGKLCNPDHVTFTTIICGLLNVGRI 502

[Close]

BLAST of MC06g0346 vs. ExPASy TrEMBL
Match: A0A6J1C2H5 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g18020 OS=Momordica charantia OX=3673 GN=LOC111006840 PE=4 SV=1)

HSP 1 Score: 173 bits (438), Expect = 6.37e-49
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM
Sbjct: 390 YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 449

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 85
           ICQFCAPDYVNFTTIIYGLLNVGRI
Sbjct: 450 ICQFCAPDYVNFTTIIYGLLNVGRI 474

[Close]

BLAST of MC06g0346 vs. ExPASy TrEMBL
Match: A0A6J1BRQ7 (pentatricopeptide repeat-containing protein At3g18020-like OS=Momordica charantia OX=3673 GN=LOC111005146 PE=4 SV=1)

HSP 1 Score: 142 bits (359), Expect = 1.18e-37
Identity = 71/85 (83.53%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           YNIYLRA+CL N STELLNT VVMLQTNCQ DVITLN VIKGFC  GSIE+ALKVLNDMM
Sbjct: 424 YNIYLRAVCLTNNSTELLNTLVVMLQTNCQPDVITLNIVIKGFCQTGSIEEALKVLNDMM 483

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 85
           I +FC PDYV FTTII GLLNVGRI
Sbjct: 484 IGKFCVPDYVTFTTIICGLLNVGRI 508

[Close]

BLAST of MC06g0346 vs. ExPASy TrEMBL
Match: A0A0A0LV25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025030 PE=4 SV=1)

HSP 1 Score: 139 bits (350), Expect = 1.86e-36
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           YNIYLRA+CL N STELLNT V MLQTNCQ DVITLNTVIKGFC +GSIE+ALKVLNDM+
Sbjct: 414 YNIYLRAVCLTNNSTELLNTLVEMLQTNCQPDVITLNTVIKGFCKVGSIEEALKVLNDMI 473

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 85
             +FC PD+V FTTII+GLLNVGRI
Sbjct: 474 GGKFCTPDHVTFTTIIFGLLNVGRI 498

[Close]

BLAST of MC06g0346 vs. ExPASy TrEMBL
Match: A0A1S3BWE8 (pentatricopeptide repeat-containing protein At3g18020 OS=Cucumis melo OX=3656 GN=LOC103494179 PE=4 SV=1)

HSP 1 Score: 137 bits (345), Expect = 9.21e-36
Identity = 67/85 (78.82%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           YNIYLRA+CL N STELLNT VVMLQ+NCQ DVITLNTVIKGFC +GSIE+ALKVLNDM+
Sbjct: 414 YNIYLRAVCLTNNSTELLNTLVVMLQSNCQPDVITLNTVIKGFCKVGSIEEALKVLNDMI 473

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 85
             +FC PD+V FTTI+ GLLNVGRI
Sbjct: 474 GGKFCTPDHVTFTTILCGLLNVGRI 498

[Close]

BLAST of MC06g0346 vs. ExPASy TrEMBL
Match: A0A5D3DXA6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G001220 PE=4 SV=1)

HSP 1 Score: 137 bits (345), Expect = 1.15e-35
Identity = 67/85 (78.82%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           YNIYLRA+CL N STELLNT VVMLQ+NCQ DVITLNTVIKGFC +GSIE+ALKVLNDM+
Sbjct: 454 YNIYLRAVCLTNNSTELLNTLVVMLQSNCQPDVITLNTVIKGFCKVGSIEEALKVLNDMI 513

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 85
             +FC PD+V FTTI+ GLLNVGRI
Sbjct: 514 GGKFCTPDHVTFTTILCGLLNVGRI 538

[Close]

BLAST of MC06g0346 vs. TAIR 10
Match: AT3G18020.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 2.8e-20
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           YNIYLR +C+ +  TE+LN  V MLQ +C+ D  TLNTVI G C +G ++ A+KVL+DMM
Sbjct: 415 YNIYLRGLCVMDNPTEILNVLVSMLQGDCRPDEYTLNTVINGLCKMGRVDDAMKVLDDMM 474

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGR 85
             +FCAPD V   T++ GLL  GR
Sbjct: 475 TGKFCAPDAVTLNTVMCGLLAQGR 498

[Close]

BLAST of MC06g0346 vs. TAIR 10
Match: AT2G06000.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 28/85 (32.94%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           +NI +R +C   K+ + L    VM    C+ D++T NT+I+GFC    + KA ++  D+ 
Sbjct: 209 FNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVK 268

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 86
               C+PD V +T++I G    G++
Sbjct: 269 SGSVCSPDVVTYTSMISGYCKAGKM 293

[Close]

BLAST of MC06g0346 vs. TAIR 10
Match: AT2G06000.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 28/85 (32.94%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           +NI +R +C   K+ + L    VM    C+ D++T NT+I+GFC    + KA ++  D+ 
Sbjct: 209 FNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVK 268

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 86
               C+PD V +T++I G    G++
Sbjct: 269 SGSVCSPDVVTYTSMISGYCKAGKM 293

[Close]

BLAST of MC06g0346 vs. TAIR 10
Match: AT1G09900.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 27/85 (31.76%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           YN  LR++C + K  + +     MLQ +C  DVIT   +I+  C    +  A+K+L++M 
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMR 266

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 86
             + C PD V +  ++ G+   GR+
Sbjct: 267 -DRGCTPDVVTYNVLVNGICKEGRL 290

[Close]

BLAST of MC06g0346 vs. TAIR 10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 28/85 (32.94%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 1   YNIYLRAICLANKSTELLNTFVVMLQTNCQSDVITLNTVIKGFCHIGSIEKALKVLNDMM 60
           +N  +  +C A      +    VMLQ     DV T N+VI G C +G +++A++VL D M
Sbjct: 298 FNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVL-DQM 357

Query: 61  ICQFCAPDYVNFTTIIYGLLNVGRI 86
           I + C+P+ V + T+I  L    ++
Sbjct: 358 ITRDCSPNTVTYNTLISTLCKENQV 381

The following BLAST results are available for this feature:

BLAST of MC06g0346 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSK8	4.0e-19	53.57	Pentatricopeptide repeat-containing protein At3g18020 OS=Arabidopsis thaliana OX...	[more]
Q9ZUE9	1.7e-09	32.94	Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana OX...	[more]
Q9LFF1	1.7e-06	32.94	Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop...	[more]
Q3EDF8	1.7e-06	31.76	Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX...	[more]
Q9LQ15	3.9e-06	35.44	Pentatricopeptide repeat-containing protein At1g62914, mitochondrial OS=Arabidop...	[more]

BLAST of MC06g0346 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134613.1	1.32e-48	100.00	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g18020 [Momo...	[more]
XP_022132241.1	2.44e-37	83.53	pentatricopeptide repeat-containing protein At3g18020-like [Momordica charantia]...	[more]
XP_011649150.1	3.84e-36	80.00	pentatricopeptide repeat-containing protein At3g18020 [Cucumis sativus] >KGN6387...	[more]
XP_008453476.1	1.90e-35	78.82	PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Cucumis melo] ...	[more]
KAG6589634.1	2.05e-35	80.00	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]

BLAST of MC06g0346 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2H5	6.37e-49	100.00	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g18020 OS=Mo...	[more]
A0A6J1BRQ7	1.18e-37	83.53	pentatricopeptide repeat-containing protein At3g18020-like OS=Momordica charanti...	[more]
A0A0A0LV25	1.86e-36	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025030 PE=4 SV=1	[more]
A0A1S3BWE8	9.21e-36	78.82	pentatricopeptide repeat-containing protein At3g18020 OS=Cucumis melo OX=3656 GN...	[more]
A0A5D3DXA6	1.15e-35	78.82	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of MC06g0346 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18020.1	2.8e-20	53.57	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G06000.1	1.2e-10	32.94	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G06000.2	1.2e-10	32.94	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G09900.1	1.2e-07	31.76	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G53700.1	1.2e-07	32.94	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 28..59 e-value: 1.6E-9 score: 37.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 34..68 e-value: 3.8E-8 score: 31.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 32..67 score: 10.073492
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..85 e-value: 6.4E-15 score: 57.1
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 4..84
None	No IPR available	PANTHER	PTHR47942:SF37	OS07G0674300 PROTEIN	coord: 4..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0346.1	MC06g0346.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding