MC06g0193 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0193
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	CLAVATA3/ESR-RELATED
Location	MC06: 1554096 .. 1554341 (-)
RNA-Seq Expression	MC06g0193
Synteny	MC06g0193

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTTCGTTCTTGCTGGGTTTGTTTTGTGTCTTCAACCTCAAACCGCATCTGGGGTCAGCTCCATTGATCTTGCTCTCAAATGGGTGCCCTTAAAATCCCCCATTGTCAACACCCACAAGGCTGTTTCTGTGAAAGGATTGAATATGAAGAAGATGAACTTGGCTCCATCCCCTGCCATGGCTTTTGACCCGAACCAATCCAACAAAAGAGGAGTCAAGAAAGGATCCGACCCGATTCACAACAGA

mRNA sequence

GTCTTCGTTCTTGCTGGGTTTGTTTTGTGTCTTCAACCTCAAACCGCATCTGGGGTCAGCTCCATTGATCTTGCTCTCAAATGGGTGCCCTTAAAATCCCCCATTGTCAACACCCACAAGGCTGTTTCTGTGAAAGGATTGAATATGAAGAAGATGAACTTGGCTCCATCCCCTGCCATGGCTTTTGACCCGAACCAATCCAACAAAAGAGGAGTCAAGAAAGGATCCGACCCGATTCACAACAGA

Coding sequence (CDS)

GTCTTCGTTCTTGCTGGGTTTGTTTTGTGTCTTCAACCTCAAACCGCATCTGGGGTCAGCTCCATTGATCTTGCTCTCAAATGGGTGCCCTTAAAATCCCCCATTGTCAACACCCACAAGGCTGTTTCTGTGAAAGGATTGAATATGAAGAAGATGAACTTGGCTCCATCCCCTGCCATGGCTTTTGACCCGAACCAATCCAACAAAAGAGGAGTCAAGAAAGGATCCGACCCGATTCACAACAGA

Protein sequence

VFVLAGFVLCLQPQTASGVSSIDLALKWVPLKSPIVNTHKAVSVKGLNMKKMNLAPSPAMAFDPNQSNKRGVKKGSDPIHNR

Homology

[Close]

BLAST of MC06g0193 vs. NCBI nr
Match: KAG6587538.1 (hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126 bits (317), Expect = 7.30e-36
Identity = 62/79 (78.48%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 4  LAGFVLCLQPQTASGVSSIDLALKWVPLKSPIVNTHKAVSVKGLNMKKMNLAPSPAMAFD 63
          LAG  LC+QPQTASG+++IDLALKWV  KSPI NTH   SVK L MK M+LAPSPAM FD
Sbjct: 13 LAGVSLCVQPQTASGLTTIDLALKWVAFKSPITNTHNPDSVKKLKMKNMSLAPSPAMHFD 72

Query: 64 PNQSNKRGVKKGSDPIHNR 82
          PNQSNKRGVKKGSDPIHNR
Sbjct: 73 PNQSNKRGVKKGSDPIHNR 91

[Close]

BLAST of MC06g0193 vs. NCBI nr
Match: KAG6589506.1 (hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118 bits (295), Expect = 1.91e-32
Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 2  FVLAGFVLCL-QPQTASGVSSIDLALKWVPLKSPIVNTHKAV-SVKGLNMKKMNLAPSPA 61
          F+LAGFV  L QPQTASG+++ID+ALKWV  KSP ++THKA  S K LNMK MN+APSPA
Sbjct: 14 FLLAGFVFSLLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSEKKLNMKNMNVAPSPA 73

Query: 62 MAFDPNQSNKRGVKKGSDPIHNR 82
          M FDPNQSNKR VKKGSDPIHNR
Sbjct: 74 MNFDPNQSNKRRVKKGSDPIHNR 96

[Close]

BLAST of MC06g0193 vs. NCBI nr
Match: KGN63668.1 (hypothetical protein Csa_014085 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 3.29e-24
Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1  VFVLAGFVLCL---QPQT-ASGVSSIDLALKWVPLKSP-IVNTHKAVSVKGLNMKKMNLA 60
          VFV+A F+LC+   QPQT A+G+S+ID ALKWV  KS   +NTHKA S    + K +NLA
Sbjct: 13 VFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSS---DEKNLNLA 72

Query: 61 -PSPAMAFDPNQSNKRGVKKGSDPIHNR 82
           PSPAM FDPNQSNKRGVKKGSDPIHNR
Sbjct: 73 APSPAMNFDPNQSNKRGVKKGSDPIHNR 97

[Close]

BLAST of MC06g0193 vs. NCBI nr
Match: ONI08679.1 (hypothetical protein PRUPE_5G193600 [Prunus persica] >PQP93108.1 hypothetical protein Pyn_31163 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 82.4 bits (202), Expect = 2.52e-18
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 2  FVLAGFVLCLQPQTASGVSSIDLALKWVP-----LKSPIVNTHKAVSVKGLNMKKMNLAP 61
          FV  GF L LQP+  SG+ S+DLAL+W       LKS  ++  KAV+V+ L   K++LAP
Sbjct: 12 FVCIGF-LALQPEKVSGLRSMDLALRWDKGHMSFLKS--LHLVKAVAVEDLQA-KLSLAP 71

Query: 62 SPAMAFDPNQSNKRGVKKGSDPIHNR 82
          +P+M FDPNQSNKR V+KGSDPIHNR
Sbjct: 72 APSMTFDPNQSNKRKVRKGSDPIHNR 93

[Close]

BLAST of MC06g0193 vs. NCBI nr
Match: PQQ10203.1 (hypothetical protein Pyn_16404 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 80.9 bits (198), Expect = 1.02e-17
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 2  FVLAGFVLCLQPQTASGVSSIDLALKWVP-----LKSPIVNTHKAVSVKGLNMKKMNLAP 61
          FV  GF L LQP+  SG+ S+DLAL+W       LKS  ++  +AV+V+ L   K++LAP
Sbjct: 12 FVCIGF-LALQPEKVSGLRSMDLALRWDKGHMSFLKS--LHLVEAVAVEDLQA-KLSLAP 71

Query: 62 SPAMAFDPNQSNKRGVKKGSDPIHNR 82
          +P+M FDPNQSNKR V+KGSDPIHNR
Sbjct: 72 APSMTFDPNQSNKRKVRKGSDPIHNR 93

[Close]

BLAST of MC06g0193 vs. ExPASy TrEMBL
Match: A0A0A0LPD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.59e-24
Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1  VFVLAGFVLCL---QPQT-ASGVSSIDLALKWVPLKSP-IVNTHKAVSVKGLNMKKMNLA 60
          VFV+A F+LC+   QPQT A+G+S+ID ALKWV  KS   +NTHKA S    + K +NLA
Sbjct: 13 VFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADSS---DEKNLNLA 72

Query: 61 -PSPAMAFDPNQSNKRGVKKGSDPIHNR 82
           PSPAM FDPNQSNKRGVKKGSDPIHNR
Sbjct: 73 APSPAMNFDPNQSNKRGVKKGSDPIHNR 97

[Close]

BLAST of MC06g0193 vs. ExPASy TrEMBL
Match: A0A7N2MQ95 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.60e-19
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 9  LCLQPQTASGVSSIDLALKWVPLKSPIVNTHKAVSVKGLN--MKKMNLAPSPAMAFDPNQ 68
          L LQP+  SG+ SIDLALKW  ++SP +   + + V  ++    K+NLAP+P++  DPNQ
Sbjct: 18 LALQPEEVSGLRSIDLALKWDKVQSPFLKHLRVLKVVAVDDFHTKLNLAPAPSVMVDPNQ 77

Query: 69 SNKRGVKKGSDPIHNR 82
          SNKR V+KGSDPIHNR
Sbjct: 78 SNKRRVRKGSDPIHNR 93

[Close]

BLAST of MC06g0193 vs. ExPASy TrEMBL
Match: M5WYZ5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.22e-18
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 2  FVLAGFVLCLQPQTASGVSSIDLALKWVP-----LKSPIVNTHKAVSVKGLNMKKMNLAP 61
          FV  GF L LQP+  SG+ S+DLAL+W       LKS  ++  KAV+V+ L   K++LAP
Sbjct: 12 FVCIGF-LALQPEKVSGLRSMDLALRWDKGHMSFLKS--LHLVKAVAVEDLQA-KLSLAP 71

Query: 62 SPAMAFDPNQSNKRGVKKGSDPIHNR 82
          +P+M FDPNQSNKR V+KGSDPIHNR
Sbjct: 72 APSMTFDPNQSNKRKVRKGSDPIHNR 93

[Close]

BLAST of MC06g0193 vs. ExPASy TrEMBL
Match: A0A314XM06 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_31163 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.22e-18
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 2  FVLAGFVLCLQPQTASGVSSIDLALKWVP-----LKSPIVNTHKAVSVKGLNMKKMNLAP 61
          FV  GF L LQP+  SG+ S+DLAL+W       LKS  ++  KAV+V+ L   K++LAP
Sbjct: 12 FVCIGF-LALQPEKVSGLRSMDLALRWDKGHMSFLKS--LHLVKAVAVEDLQA-KLSLAP 71

Query: 62 SPAMAFDPNQSNKRGVKKGSDPIHNR 82
          +P+M FDPNQSNKR V+KGSDPIHNR
Sbjct: 72 APSMTFDPNQSNKRKVRKGSDPIHNR 93

[Close]

BLAST of MC06g0193 vs. ExPASy TrEMBL
Match: A0A314YU30 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_16404 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.95e-18
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 2  FVLAGFVLCLQPQTASGVSSIDLALKWVP-----LKSPIVNTHKAVSVKGLNMKKMNLAP 61
          FV  GF L LQP+  SG+ S+DLAL+W       LKS  ++  +AV+V+ L   K++LAP
Sbjct: 12 FVCIGF-LALQPEKVSGLRSMDLALRWDKGHMSFLKS--LHLVEAVAVEDLQA-KLSLAP 71

Query: 62 SPAMAFDPNQSNKRGVKKGSDPIHNR 82
          +P+M FDPNQSNKR V+KGSDPIHNR
Sbjct: 72 APSMTFDPNQSNKRKVRKGSDPIHNR 93

The following BLAST results are available for this feature:

BLAST of MC06g0193 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g0193 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587538.1	7.30e-36	78.48	hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6589506.1	1.91e-32	74.70	hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN63668.1	3.29e-24	67.05	hypothetical protein Csa_014085 [Cucumis sativus]	[more]
ONI08679.1	2.52e-18	56.98	hypothetical protein PRUPE_5G193600 [Prunus persica] >PQP93108.1 hypothetical pr...	[more]
PQQ10203.1	1.02e-17	55.81	hypothetical protein Pyn_16404 [Prunus yedoensis var. nudiflora]	[more]

BLAST of MC06g0193 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPD5	1.59e-24	67.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1	[more]
A0A7N2MQ95	8.60e-19	53.95	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
M5WYZ5	1.22e-18	56.98	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1	[more]
A0A314XM06	1.22e-18	56.98	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_311...	[more]
A0A314YU30	4.95e-18	55.81	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_164...	[more]

BLAST of MC06g0193 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..82
None	No IPR available	PANTHER	PTHR36726:SF5	CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE11	coord: 4..82
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 4..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0193.1	MC06g0193.1	mRNA