MC06g0124 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0124
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribosomal RNA-processing protein 40
Location	MC06: 1021179 .. 1024234 (-)
RNA-Seq Expression	MC06g0124
Synteny	MC06g0124

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATAGTATTTAAAATAATTCTAAAACAAAGACGAATAATTTAGGTGTACTAATTCGACTCAACATATACATAACAGTACACATTAGAATTTATATTTAGCCTTTTAATTATTCTATAAACCAATCTGCTTTGATTTATTTGCGCGTACCCTCTTTTTTCTTTTGCGCTCACTGCTCTCGCCCAATAGATATATATTTTTTTCCACTGATAATTCTTCCGATCGCCGACTGCAATTTGAAGAGCTTGTTTACTGGGTAATGTCTGCGACTATGGTGGAAAAATCTTCCAGTTCATCATCTACCGTCGCTGATCGGCCAGTTGTAAGTTTCAAATAATCTCCTGTATCCGTTTTCCCACCTTGTTTTTCTTGTTCGATGTTCTACAGCTTGTAAATGACTTGGAGTATTCGGATTTTTTTTTACTGGAATGTCGATTGTTTAGGTTCCAGGAGATGTGGTTCTTGACCTTTCAGACATGGCCAACCAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGTGTTTGCTAGGGTTTTCCTTTTCCTCGTTTTTGCATCTCCATATATGTGTCGGTTACAGGATTGTTGACAATATTTTGTATCTTTCAGGACCATGATGCTATTTCTGTCTCGAAGGCTGGAAAACTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGGTCAGTAATTGACTTTGTTTCGTTGACAATGGGGATCCTTATATTGTTCTTTCAGCTAACTATTGAATTTTAAACTGCAACTTCTGTAACGGTGGTTTTCTTCATTTTAATAGACTGCTGATATCATTCTAAATGTTGCCATTTTTCAGTACGTACCATGTGCAGAAGATTGTGTACTCGGCATCGTGGTTGACTCTAGAGCGGATGTAAGTGCTTCTTTATTGTTTTAGTTTTTAAATATGGTTATGTTCAATCACGATATAACTGCCTCCTCTTTCTGTTTGTCTTGTTTGGATAGTTTGGCTGGTATCCATGTCTAACAAGTCTTTATGGCGCTAAGGAAGATTTTTGTTCCATTACGCCGTAAGATATCATCTTGTGATGTTTATTCCTCATGTTGTTTGCAGAACTTTTTTGTCGACATAAAAGGTCCTGCATTGGCGCTCCTTCCCGTTCTTGCATTTGAAGGAGGAACGAGGCGAAACATACCCAAATTTGAGGTGTGTATAGCTTTTCATGCCAATATAGCTTTTGGTATAGTTACTCCCGTGTTTTCCTTTAGAGATTTGGTACTTTGTCAGTTCATTCTTCATCAAAAAATACTTTGTCAGAATTCTCCAGAAAGGTGTCTGTGAGGGTGCAGGGTGGTATAGTTACCTTTTGCATATTTACCTTCTGGAATTTGGCTCTCATTGCAATCTACTTATCCTAATTCCTGACTCAGGGAGATATACTTTTTCAGGGGACTGTTGCTATTCACCTTTGAAAATCACCCCGTTGCTGAGTGTTTCTTTATTTTGGGTGGGGGCGTAATTTTAAGTGTATTCAGTCGAAGTAGAGTGTGCTTGATCATGAAGCTAACACGTCATTCTCCTTAAACATATCCTATTGGTTCCCTGTTTCGTAGGCAGGTGCCCTGCTTTATGTGCGAGTAGTGAAGGCAAACCCTGGTATGAATCCCGAGTTGGCATGCACCGATGGTTAGTTAACTCCTTCCTCTCCCAGTGTTCAATAAATTGTTTGAAGGCAGAAACAATCAATGAAAGAAATGAATTCACATTTCTGCGTACTCCTCCTCTGAAGAGGAGGGGTGGGCAGGCCCTGGATACTCTATGCAAGTTTATGTTCCGTTTCCAGTTTTTGGTTGTTGTTATTGACATGGAATATATCTCATGTGAGTATCATTTTGCTTGATAGCTAGTGGGAAAGCTGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGTAAGCTAATTTGTTTTTCTTAATTTTTCTTTTTTCCCCACTTTAAGAGTCACTTTTCTGATCATTCATTCACACTGATGATTTTATCCTCTCTTCTAGGCTTCTAAGCTTGCCTACATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCGTTCGAGACAGCAGTTGGTTTAAATGGCCGTGTTTGGGTATATTTTCAATCCTTAGATTTCCATTGCTCTACTTTATGGTTTACCATGTATAATTCTCTTCCTATGATTTCTTCTAGCACATATTGACCTTCTGTTTACATCAAGAAAAACTTTCATTATATGAACACTCGTGTTAGATTGTTGGAATTAATCTCGATTCATAGAATGTTTTACTGTTTTCTATGTTTCTTTTTGCCTTGTTAACTTTGAACTGTTCTTTGAAATTTGAAGATGTAATTTCTTCTACCAATCTTACTAATAGCTGTCACATATTTATAACTTTTTCTCTCTATTTCCAGGTAAATGCTGATTCTCCATCCACAACCATAGTTGTTTCTAATGCAATTATGAACTCGGAAACTCTTACTGGGGTTCAACAGAGAATCATGGTGGACAAACTCCTTAATAATTTAAAGCTGTCGAGTTAGTATGTAAACTTCAGGGTCAGAATTATGAAATTACATTTTTAGTTCTTTGGGGGTTTTTTTTTTTTTTTTTTTTGTTGTCTATGTCAGTTAATTTTTTGTTCTTTACATTAAAATTTGTTTGAAAAAAAGTAGTCATTCAATGACATTAATTTTATAAATCTACAGGTTAATGCCTATTTGGTCCACAGCTCCAGAGTTAATGATTGTTTGGTCTAAACTTAAAGAGAATTAAAAGTAGTATGAATTAATCAAATTATATTAATTTTCATAATTCTGGTTTAAACAAATATACTTGATAAAAAATATAAACAAAATGCCTTTTCATTTAATTTGGATTTTACCATTTTTTTTTAGCATAATTTGGATTTGACCTTTAGTCCACCTAGTGGTCATTGGGATAAGTAATTGACTTGGAGATGGGTTTAAACTTTTTTTATGATCGAGATATTAAAGTCTTATTAGTTTTT

mRNA sequence

CAAAATAGTATTTAAAATAATTCTAAAACAAAGACGAATAATTTAGGTGTACTAATTCGACTCAACATATACATAACAGTACACATTAGAATTTATATTTAGCCTTTTAATTATTCTATAAACCAATCTGCTTTGATTTATTTGCGCGTACCCTCTTTTTTCTTTTGCGCTCACTGCTCTCGCCCAATAGATATATATTTTTTTCCACTGATAATTCTTCCGATCGCCGACTGCAATTTGAAGAGCTTGTTTACTGGGTAATGTCTGCGACTATGGTGGAAAAATCTTCCAGTTCATCATCTACCGTCGCTGATCGGCCAGTTGTTCCAGGAGATGTGGTTCTTGACCTTTCAGACATGGCCAACCAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCATGATGCTATTTCTGTCTCGAAGGCTGGAAAACTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTACCATGTGCAGAAGATTGTGTACTCGGCATCGTGGTTGACTCTAGAGCGGATAACTTTTTTGTCGACATAAAAGGTCCTGCATTGGCGCTCCTTCCCGTTCTTGCATTTGAAGGAGGAACGAGGCGAAACATACCCAAATTTGAGGTGTGTGCCCTGCTTTATGTGCGAGTAGTGAAGGCAAACCCTGGTATGAATCCCGAGTTGGCATGCACCGATGCTAGTGGGAAAGCTGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTTGCCTACATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCGTTCGAGACAGCAGTTGGTTTAAATGGCCGTGTTTGGGTAAATGCTGATTCTCCATCCACAACCATAGTTGTTTCTAATGCAATTATGAACTCGGAAACTCTTACTGGGGTTCAACAGAGAATCATGGTGGACAAACTCCTTAATAATTTAAAGCTGTCGAGTTAGTATGTAAACTTCAGGGTCAGAATTATGAAATTACATTTTTAGTTCTTTGGGGGTTTTTTTTTTTTTTTTTTTTGTTGTCTATGTCAGTTAATTTTTTGTTCTTTACATTAAAATTTGTTTGAAAAAAAGTAGTCATTCAATGACATTAATTTTATAAATCTACAGGTTAATGCCTATTTGGTCCACAGCTCCAGAGTTAATGATTGTTTGGTCTAAACTTAAAGAGAATTAAAAGTAGTATGAATTAATCAAATTATATTAATTTTCATAATTCTGGTTTAAACAAATATACTTGATAAAAAATATAAACAAAATGCCTTTTCATTTAATTTGGATTTTACCATTTTTTTTTAGCATAATTTGGATTTGACCTTTAGTCCACCTAGTGGTCATTGGGATAAGTAATTGACTTGGAGATGGGTTTAAACTTTTTTTATGATCGAGATATTAAAGTCTTATTAGTTTTT

Coding sequence (CDS)

ATGTCTGCGACTATGGTGGAAAAATCTTCCAGTTCATCATCTACCGTCGCTGATCGGCCAGTTGTTCCAGGAGATGTGGTTCTTGACCTTTCAGACATGGCCAACCAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCATGATGCTATTTCTGTCTCGAAGGCTGGAAAACTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTACCATGTGCAGAAGATTGTGTACTCGGCATCGTGGTTGACTCTAGAGCGGATAACTTTTTTGTCGACATAAAAGGTCCTGCATTGGCGCTCCTTCCCGTTCTTGCATTTGAAGGAGGAACGAGGCGAAACATACCCAAATTTGAGGTGTGTGCCCTGCTTTATGTGCGAGTAGTGAAGGCAAACCCTGGTATGAATCCCGAGTTGGCATGCACCGATGCTAGTGGGAAAGCTGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTTGCCTACATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCGTTCGAGACAGCAGTTGGTTTAAATGGCCGTGTTTGGGTAAATGCTGATTCTCCATCCACAACCATAGTTGTTTCTAATGCAATTATGAACTCGGAAACTCTTACTGGGGTTCAACAGAGAATCATGGTGGACAAACTCCTTAATAATTTAAAGCTGTCGAGTTAG

Protein sequence

MSATMVEKSSSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRNIPKFEVCALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLPTCPVLESLGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLKLSS

Homology

[Close]

BLAST of MC06g0124 vs. ExPASy Swiss-Prot
Match: Q7KWX9 (Putative exosome complex component rrp40 OS=Dictyostelium discoideum OX=44689 GN=exosc3 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.0e-46
Identity = 104/228 (45.61%), Postives = 140/228 (61.40%), Query Frame = 0


Query: 15  TVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLRFSKPNK-YWVESSQ 74
           T+ D+ VVPGDV+  + D+    +++G GL Q  D +  +KAG LR+SK ++ YW+E+ Q
Sbjct: 3   TLKDQFVVPGDVIGKIGDL---KVRIGPGLLQTKDTVLATKAGVLRYSKFHRFYWIENEQ 62

Query: 75  KRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRNIPKFEVCALLYVR 134
           KRYVP  ED V+G +++  A++F VDI     ALL   +FEG T+ N P   V  L+Y R
Sbjct: 63  KRYVPQVEDMVIGTIIEKHAESFKVDIGSSCSALLSAYSFEGATKSNKPLLNVGNLIYCR 122

Query: 135 VVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLPTCPVLESLGKKLS 194
           V  AN  M PE+ C     KA GFG L  GYM  CS GLS  LLS   C +L+ LGK + 
Sbjct: 123 VTVANRDMEPEVVCLSQKQKAEGFGQLIGGYMLNCSLGLSHYLLS-EDCFLLQILGKHIP 182

Query: 195 FETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLN 242
           +E AVG+NGRVW+N+ S   TIVVSN I NS+ +   Q    + K L+
Sbjct: 183 YEIAVGVNGRVWINSGSNHNTIVVSNTIYNSQYIQDDQIEPFILKSLS 226

[Close]

BLAST of MC06g0124 vs. ExPASy Swiss-Prot
Match: Q8IPX7 (Exosome complex component RRP40 OS=Drosophila melanogaster OX=7227 GN=Rrp40 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.5e-39
Identity = 91/234 (38.89%), Postives = 141/234 (60.26%), Query Frame = 0


Query: 11  SSSSTVADRPVVPGDVVLDLSDMA-NQTIKLGGGLRQDHDAISVSKAGKLRFSKPNKYWV 70
           S++ST+    V+PG+ +  + ++A ++ + LG GLR+  D +  SKAG LR  +P  +WV
Sbjct: 2   SATSTI----VMPGERIAAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHKEPGTFWV 61

Query: 71  ESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRNIPKFEVCAL 130
           ++ Q+RY+P   D +LGIV     D + VDI     A +  LAFE  +++N P      L
Sbjct: 62  DNYQRRYIPARGDLILGIVRAKAGDLYRVDIGATDTASISYLAFEAASKKNRPDLIPGDL 121

Query: 131 LYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLPTCPVLESLG 190
           +Y RV+ A+  + PEL C ++ GK+   G+L DG+ F+CS  L RMLL    CPVL +L 
Sbjct: 122 IYARVLNASADIEPELVCVNSVGKSGKLGVLTDGFFFKCSLNLGRMLLR-ENCPVLAALT 181

Query: 191 KKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNL 244
           ++L +E AVG+NGR+W+ A S   T+ ++NAI   E  +G  +   +DK+  NL
Sbjct: 182 RELPYEIAVGVNGRIWLKAHSLKETVALANAISALEQ-SGCAE---IDKICGNL 226

[Close]

BLAST of MC06g0124 vs. ExPASy Swiss-Prot
Match: Q7TQK4 (Exosome complex component RRP40 OS=Mus musculus OX=10090 GN=Exosc3 PE=1 SV=3)

HSP 1 Score: 156.0 bits (393), Expect = 5.5e-37
Identity = 84/205 (40.98%), Postives = 124/205 (60.49%), Query Frame = 0


Query: 41  GGGLRQDHDAISVSKAGKLRFSKPN-----KYWVESSQKRYVPCAEDCVLGIVVDSRADN 100
           G GLR+  D + V+K G+LR  +P+      YWV+S QKRYVP   D V+GIV+    D 
Sbjct: 68  GPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWVDSQQKRYVPVKGDHVIGIVIAKSGDI 127

Query: 101 FFVDIKGPALALLPVLAFEGGTRRNIPKFEVCALLYVRVVKANPGMNPELACTDASGKAA 160
           F VD+ G   A L  LAFEG T+RN P  +V  L+Y + V AN  M PE+ C D+ G+A 
Sbjct: 128 FKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCVVANKDMEPEMVCIDSCGRAN 187

Query: 161 GFGLL-KDGYMFECSTGLSRMLLSLPTCPVLESLGKKLSFETAVGLNGRVWVNADSPSTT 220
           G G++ +DG +F+ + GL R LL+ P C +++ LGK    E   G+NGR+WV A +   T
Sbjct: 188 GMGVIGQDGLLFKVTLGLIRKLLA-PDCEIVQELGKLYPLEIVFGMNGRIWVKAKTIQQT 247

Query: 221 IVVSNAIMNSETLTGVQQRIMVDKL 240
           ++++N +   E +T  Q++ +  +L
Sbjct: 248 LILANVLEACEHMTTEQRKQIFARL 271

[Close]

BLAST of MC06g0124 vs. ExPASy Swiss-Prot
Match: Q3T0E1 (Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXOSC3 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.2e-37
Identity = 90/231 (38.96%), Postives = 131/231 (56.71%), Query Frame = 0


Query: 18  DRPVVPGDVVLDLSDMANQ--TIKLGGGLRQDHDAISVSKAGKLRFSKPNK------YWV 77
           D P   G+  L L+  A     +  G GLR+  D + V+K G+LR  +P        YWV
Sbjct: 43  DGPGGAGERPLRLNAAARSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWV 102

Query: 78  ESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRNIPKFEVCAL 137
           +S QKRYVP   D V+GIV     D F VD+ G   A L  LAFEG T+RN P  +V  L
Sbjct: 103 DSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDL 162

Query: 138 LYVRVVKANPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSLPTCPVLESL 197
           +Y + V AN  M PE+ C D+ G+A G G++ +DG +F+ + GL R LL+ P C +L+ +
Sbjct: 163 IYGQFVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLA-PDCEILQEV 222

Query: 198 GKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKL 240
           GK    E   G+NGR+WV A +   T++++N +   E +T  Q++ +  +L
Sbjct: 223 GKLYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTADQRKQIFSRL 272

[Close]

BLAST of MC06g0124 vs. ExPASy Swiss-Prot
Match: Q9NQT5 (Exosome complex component RRP40 OS=Homo sapiens OX=9606 GN=EXOSC3 PE=1 SV=3)

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-36
Identity = 88/229 (38.43%), Postives = 132/229 (57.64%), Query Frame = 0


Query: 23  PGDVV---LDLSDMANQTIKL--GGGLRQDHDAISVSKAGKLRFSKPNK------YWVES 82
           PG  V   L L+  A   +++  G GLR+  D + V+K G+LR  +P        YWV+S
Sbjct: 45  PGGAVERPLSLNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDS 104

Query: 83  SQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRNIPKFEVCALLY 142
            QKRYVP   D V+GIV     D F VD+ G   A L  L+FEG T+RN P  +V  L+Y
Sbjct: 105 QQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIY 164

Query: 143 VRVVKANPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSLPTCPVLESLGK 202
            + V AN  M PE+ C D+ G+A G G++ +DG +F+ + GL R LL+ P C +++ +GK
Sbjct: 165 GQFVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLA-PDCEIIQEVGK 224

Query: 203 KLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKL 240
               E   G+NGR+WV A +   T++++N +   E +T  Q++ +  +L
Sbjct: 225 LYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRL 272

[Close]

BLAST of MC06g0124 vs. NCBI nr
Match: XP_022134646.1 (putative exosome complex component rrp40 [Momordica charantia])

HSP 1 Score: 477 bits (1227), Expect = 2.18e-169
Identity = 245/247 (99.19%), Postives = 245/247 (99.19%), Query Frame = 0


Query: 1   MSATMVEKSSSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLR 60
           MSATMVEKSSSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLR
Sbjct: 1   MSATMVEKSSSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLR 60

Query: 61  FSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRN 120
           FSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRN
Sbjct: 61  FSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRN 120

Query: 121 IPKFEVCALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLP 180
           IPKFE  ALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLP
Sbjct: 121 IPKFEAGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLP 180

Query: 181 TCPVLESLGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLL 240
           TCPVLESLGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLL
Sbjct: 181 TCPVLESLGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLL 240

Query: 241 NNLKLSS 247
           NNLKLSS
Sbjct: 241 NNLKLSS 247

[Close]

BLAST of MC06g0124 vs. NCBI nr
Match: KAG7023129.1 (putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 451 bits (1159), Expect = 4.37e-159
Identity = 228/243 (93.83%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 5   MVEKSSSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLRFSKP 64
           MVEKSSSSSST+ D+PVVPGDVVLDLS+MAN+TIKLGGGLRQDHDAISVSK GKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 65  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRNIPKF 124
           NKYWVESSQKRYVPC EDCVLGIVVDSRADNF VDIKGPALA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 125 EVCALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLPTCPV 184
           E+ ALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLS PTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 185 LESLGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 244
           LES GKKLSFETAVGLNGRVWVNADSPSTTIVVSNAI+NSETL+GVQQRIMVDKLLNNLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 245 LSS 247
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of MC06g0124 vs. NCBI nr
Match: XP_022921727.1 (putative exosome complex component rrp40 [Cucurbita moschata])

HSP 1 Score: 450 bits (1157), Expect = 8.83e-159
Identity = 227/243 (93.42%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 5   MVEKSSSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLRFSKP 64
           MVEKSSSSSST+ D+PVVPGDVVLDLS+MAN+T+KLGGGLRQDHDAISVSK GKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETLKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 65  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRNIPKF 124
           NKYWVESSQKRYVPC EDCVLGIVVDSRADNF VDIKGPALA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 125 EVCALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLPTCPV 184
           E+ ALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLS PTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 185 LESLGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 244
           LES GKKLSFETAVGLNGRVWVNADSPSTTIVVSNAI+NSETL+GVQQRIMVDKLLNNLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 245 LSS 247
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of MC06g0124 vs. NCBI nr
Match: XP_023515767.1 (putative exosome complex component rrp40 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 447 bits (1151), Expect = 7.25e-158
Identity = 226/243 (93.00%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 5   MVEKSSSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLRFSKP 64
           MVEKSSSSSST+ D+PVVPGDVVLDLS+MAN+TIKLGGGLRQDHDAISVSK GKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 65  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRNIPKF 124
           NKYWVESSQKRYVPC EDCVLGIVVDSR+DNF VDIKGPALA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 125 EVCALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLPTCPV 184
           E+ ALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLS PTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 185 LESLGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 244
           LES G KLSFETAVGLNGRVWVNADSPSTTIVVSNAI+NSETL+GVQQRIMVDKLLNNLK
Sbjct: 181 LESFGNKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 245 LSS 247
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of MC06g0124 vs. NCBI nr
Match: XP_022988424.1 (putative exosome complex component rrp40 [Cucurbita maxima])

HSP 1 Score: 445 bits (1145), Expect = 5.95e-157
Identity = 224/243 (92.18%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 5   MVEKSSSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLRFSKP 64
           MVEKSSSSSST+ D+PVVPGDVVLDLS+MAN+TIKLGGGLRQDHDAISVSK GKLRF+KP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFTKP 60

Query: 65  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRNIPKF 124
           NKYWVESSQKRYVPC EDCVLGIVVDSR+DNF VDIKGPALA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 125 EVCALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLPTCPV 184
           E+ ALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLS PTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 185 LESLGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 244
           LES GKKLSFETAVGLNGRVWVNADSPSTTIVVSNA++NSETL+GVQQRIMVD LLNNLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNALLNSETLSGVQQRIMVDMLLNNLK 240

Query: 245 LSS 247
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of MC06g0124 vs. ExPASy TrEMBL
Match: A0A6J1BYE1 (Ribosomal RNA-processing protein 40 OS=Momordica charantia OX=3673 GN=LOC111006870 PE=3 SV=1)

HSP 1 Score: 477 bits (1227), Expect = 1.06e-169
Identity = 245/247 (99.19%), Postives = 245/247 (99.19%), Query Frame = 0


Query: 1   MSATMVEKSSSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLR 60
           MSATMVEKSSSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLR
Sbjct: 1   MSATMVEKSSSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLR 60

Query: 61  FSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRN 120
           FSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRN
Sbjct: 61  FSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRN 120

Query: 121 IPKFEVCALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLP 180
           IPKFE  ALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLP
Sbjct: 121 IPKFEAGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLP 180

Query: 181 TCPVLESLGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLL 240
           TCPVLESLGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLL
Sbjct: 181 TCPVLESLGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLL 240

Query: 241 NNLKLSS 247
           NNLKLSS
Sbjct: 241 NNLKLSS 247

[Close]

BLAST of MC06g0124 vs. ExPASy TrEMBL
Match: A0A6J1E1A1 (Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC111429887 PE=3 SV=1)

HSP 1 Score: 450 bits (1157), Expect = 4.27e-159
Identity = 227/243 (93.42%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 5   MVEKSSSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLRFSKP 64
           MVEKSSSSSST+ D+PVVPGDVVLDLS+MAN+T+KLGGGLRQDHDAISVSK GKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETLKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 65  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRNIPKF 124
           NKYWVESSQKRYVPC EDCVLGIVVDSRADNF VDIKGPALA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 125 EVCALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLPTCPV 184
           E+ ALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLS PTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 185 LESLGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 244
           LES GKKLSFETAVGLNGRVWVNADSPSTTIVVSNAI+NSETL+GVQQRIMVDKLLNNLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 245 LSS 247
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of MC06g0124 vs. ExPASy TrEMBL
Match: A0A6J1JLH7 (Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111485670 PE=3 SV=1)

HSP 1 Score: 445 bits (1145), Expect = 2.88e-157
Identity = 224/243 (92.18%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 5   MVEKSSSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLRFSKP 64
           MVEKSSSSSST+ D+PVVPGDVVLDLS+MAN+TIKLGGGLRQDHDAISVSK GKLRF+KP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFTKP 60

Query: 65  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRNIPKF 124
           NKYWVESSQKRYVPC EDCVLGIVVDSR+DNF VDIKGPALA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 125 EVCALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLPTCPV 184
           E+ ALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLS PTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 185 LESLGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 244
           LES GKKLSFETAVGLNGRVWVNADSPSTTIVVSNA++NSETL+GVQQRIMVD LLNNLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNALLNSETLSGVQQRIMVDMLLNNLK 240

Query: 245 LSS 247
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of MC06g0124 vs. ExPASy TrEMBL
Match: A0A6J1ECW1 (Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC111433176 PE=3 SV=1)

HSP 1 Score: 442 bits (1136), Expect = 6.78e-156
Identity = 222/243 (91.36%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 5   MVEKSSSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLRFSKP 64
           MVEKSSSSSS + D+PVVPGDVVLDLS+M N+TIKLGGGLRQDHDAISV+K GKLRFSKP
Sbjct: 1   MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKP 60

Query: 65  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRNIPKF 124
           NKYWVESSQKRYVPCAEDCVLGIVVDSR+DNF VDIKGP+LA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120

Query: 125 EVCALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLPTCPV 184
           E+ ALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGY+F+CSTGLSRMLLS PTCPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPV 180

Query: 185 LESLGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 244
           LESLGKKLSFETAVG+NGRVWVNADSPSTTIVVSNAIMNSETL+GVQQRIMVDKLLNNLK
Sbjct: 181 LESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLK 240

Query: 245 LSS 247
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of MC06g0124 vs. ExPASy TrEMBL
Match: A0A6J1I8H3 (Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111471933 PE=3 SV=1)

HSP 1 Score: 441 bits (1135), Expect = 9.63e-156
Identity = 222/243 (91.36%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 5   MVEKSSSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLRFSKP 64
           MVEKSSSSSS + D+PVVPGDVVLDLS+M N+TIKLGGGLRQDHDAISV+K GKLRFSKP
Sbjct: 1   MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKP 60

Query: 65  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRNIPKF 124
           NKYWVESSQKRYVPCAEDCVLGIVVDSR+DNF VDIKGP+LA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 125 EVCALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLPTCPV 184
           E+ ALLYVRVVKANPGMNPELACTDASGKAAGFG LKDGY+F+CSTGLSRMLLS PTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGHLKDGYIFDCSTGLSRMLLSSPTCPV 180

Query: 185 LESLGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 244
           LESLGKKLSFETAVG+NGRVWVNADSPSTTIVVSNAIMNSETL+GVQQRIMVDKLLNNLK
Sbjct: 181 LESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLK 240

Query: 245 LSS 247
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of MC06g0124 vs. TAIR 10
Match: AT2G25355.1 (PNAS-3 related )

HSP 1 Score: 347.4 bits (890), Expect = 9.2e-96
Identity = 172/234 (73.50%), Postives = 198/234 (84.62%), Query Frame = 0


Query: 10  SSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLRFSKPNKYWV 69
           S+S +++ D+ VVPGDVVLDLS+M NQTIKLG GLRQD++ ISV +AGKLR+SKPNKYWV
Sbjct: 6   STSPTSLIDQTVVPGDVVLDLSNMTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKYWV 65

Query: 70  ESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRNIPKFEVCAL 129
           ESS KRYVP  ED VLGIVVD + +N+++DIKGP LALLPVLAFEG  RRN PKFEV  L
Sbjct: 66  ESSHKRYVPRPEDHVLGIVVDCKGENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVSTL 125

Query: 130 LYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLPTCPVLESLG 189
           LY RVVK N GMNPEL+C D SGKAAGFG LKDG+MFE STGLSRMLLS PTCPVLE+LG
Sbjct: 126 LYTRVVKTNTGMNPELSCVDESGKAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALG 185

Query: 190 KKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNL 244
           KKLSFETA GLNGR WV+A +P   I+V+NA+MNSETL+G QQRIMV+KLL  +
Sbjct: 186 KKLSFETAFGLNGRCWVHAAAPRIVIIVANALMNSETLSGTQQRIMVEKLLEKI 239

[Close]

BLAST of MC06g0124 vs. TAIR 10
Match: AT4G32175.1 (PNAS-3 related )

HSP 1 Score: 345.5 bits (885), Expect = 3.5e-95
Identity = 176/236 (74.58%), Postives = 203/236 (86.02%), Query Frame = 0


Query: 5   MVEKSSSSSSTVADRPVVPGDVVLDLSDMANQTIKLGGGLRQDHDAISVSKAGKLRFSKP 64
           M  K S S +++ ++ VVPGDVVLDLS+M NQTIKLG GL QD+DAIS  +AGKL +SKP
Sbjct: 1   MAAKVSVSPTSLLNQIVVPGDVVLDLSNMNNQTIKLGSGLLQDNDAISAMRAGKLSYSKP 60

Query: 65  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFFVDIKGPALALLPVLAFEGGTRRNIPKF 124
           NKYW+ESS KRY+P  +D VLGIVVDSRADNF+VDIKGP LALLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWLESSHKRYIPRPDDHVLGIVVDSRADNFWVDIKGPQLALLPVLAFEGGTRRNIPKF 120

Query: 125 EVCALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSLPTCPV 184
           EV  LLY+RVVK N GMNPEL+CT+ASGKAA FG L+DG+MFE STGLSRMLL+ PT PV
Sbjct: 121 EVGTLLYLRVVKTNIGMNPELSCTEASGKAALFGPLRDGFMFETSTGLSRMLLNSPTRPV 180

Query: 185 LESLGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLL 241
           +E+LGKKLSFE AVGLNGRVWVNA +P   I+V+NAIMNSE+L+G QQRIMV+KLL
Sbjct: 181 IEALGKKLSFEIAVGLNGRVWVNATAPRIVIIVANAIMNSESLSGTQQRIMVEKLL 236

[Close]

BLAST of MC06g0124 vs. TAIR 10
Match: AT2G25355.2 (PNAS-3 related )

HSP 1 Score: 322.4 bits (825), Expect = 3.2e-88
Identity = 158/211 (74.88%), Postives = 178/211 (84.36%), Query Frame = 0


Query: 33  MANQTIKLGGGLRQDHDAISVSKAGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSR 92
           M NQTIKLG GLRQD++ ISV +AGKLR+SKPNKYWVESS KRYVP  ED VLGIVVD +
Sbjct: 1   MTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKYWVESSHKRYVPRPEDHVLGIVVDCK 60

Query: 93  ADNFFVDIKGPALALLPVLAFEGGTRRNIPKFEVCALLYVRVVKANPGMNPELACTDASG 152
            +N+++DIKGP LALLPVLAFEG  RRN PKFEV  LLY RVVK N GMNPEL+C D SG
Sbjct: 61  GENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVSTLLYTRVVKTNTGMNPELSCVDESG 120

Query: 153 KAAGFGLLKDGYMFECSTGLSRMLLSLPTCPVLESLGKKLSFETAVGLNGRVWVNADSPS 212
           KAAGFG LKDG+MFE STGLSRMLLS PTCPVLE+LGKKLSFETA GLNGR WV+A +P 
Sbjct: 121 KAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALGKKLSFETAFGLNGRCWVHAAAPR 180

Query: 213 TTIVVSNAIMNSETLTGVQQRIMVDKLLNNL 244
             I+V+NA+MNSETL+G QQRIMV+KLL  +
Sbjct: 181 IVIIVANALMNSETLSGTQQRIMVEKLLEKI 211

The following BLAST results are available for this feature:

BLAST of MC06g0124 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7KWX9	1.0e-46	45.61	Putative exosome complex component rrp40 OS=Dictyostelium discoideum OX=44689 GN...	[more]
Q8IPX7	3.5e-39	38.89	Exosome complex component RRP40 OS=Drosophila melanogaster OX=7227 GN=Rrp40 PE=1...	[more]
Q7TQK4	5.5e-37	40.98	Exosome complex component RRP40 OS=Mus musculus OX=10090 GN=Exosc3 PE=1 SV=3	[more]
Q3T0E1	7.2e-37	38.96	Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXOSC3 PE=2 SV=1	[more]
Q9NQT5	2.1e-36	38.43	Exosome complex component RRP40 OS=Homo sapiens OX=9606 GN=EXOSC3 PE=1 SV=3	[more]

BLAST of MC06g0124 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134646.1	2.18e-169	99.19	putative exosome complex component rrp40 [Momordica charantia]	[more]
KAG7023129.1	4.37e-159	93.83	putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp....	[more]
XP_022921727.1	8.83e-159	93.42	putative exosome complex component rrp40 [Cucurbita moschata]	[more]
XP_023515767.1	7.25e-158	93.00	putative exosome complex component rrp40 [Cucurbita pepo subsp. pepo]	[more]
XP_022988424.1	5.95e-157	92.18	putative exosome complex component rrp40 [Cucurbita maxima]	[more]

BLAST of MC06g0124 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BYE1	1.06e-169	99.19	Ribosomal RNA-processing protein 40 OS=Momordica charantia OX=3673 GN=LOC1110068...	[more]
A0A6J1E1A1	4.27e-159	93.42	Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC11142988...	[more]
A0A6J1JLH7	2.88e-157	92.18	Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111485670 ...	[more]
A0A6J1ECW1	6.78e-156	91.36	Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC11143317...	[more]
A0A6J1I8H3	9.63e-156	91.36	Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111471933 ...	[more]

BLAST of MC06g0124 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25355.1	9.2e-96	73.50	PNAS-3 related	[more]
AT4G32175.1	3.5e-95	74.58	PNAS-3 related	[more]
AT2G25355.2	3.2e-88	74.88	PNAS-3 related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.100		coord: 8..77 e-value: 5.9E-15 score: 57.2
None	No IPR available	GENE3D	2.40.50.140		coord: 82..158 e-value: 4.5E-24 score: 85.9
None	No IPR available	PANTHER	PTHR21321:SF1	EXOSOME COMPLEX COMPONENT RRP40	coord: 15..241
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 14..74
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 159..242 e-value: 3.9E-28 score: 98.9
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 162..244
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 163..211 e-value: 4.4E-17 score: 62.3
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 15..241
IPR037319	Rrp40, S1 domain	CDD	cd05790	S1_Rrp40	coord: 75..160 e-value: 4.17217E-39 score: 128.916
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 74..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0124.1	MC06g0124.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071034	CUT catabolic process
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding