MC06g0055 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0055
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RNase H domain-containing protein
Location	MC06: 360614 .. 360943 (+)
RNA-Seq Expression	MC06g0055
Synteny	MC06g0055

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCTTTTCTACATGGAAAGCAAATTTCTCCTCTTGTCATGAGAGGCGAATGGATTCTAAATTACTTCAACCAATATGAACAAGCTAGGATTAAGTCACATACCGCTAACAGGAGTACCGCTACTTCTCAAGCCCATCAGCAATGGAGACCTCCAGCAGAAAATTCCTTTAAATTGAACACGGACGTGGCTTGTAGACCAAATTTATCTTCCATCGGGGCTGTGCTTCGTGATTCAAATGGTTTCCTTGTTGCGGCAACAATGATTCAACATCCTTCTCCCCTGCCTCCTCTGTTGACGGAAATTTGGGGAATTTTGGAAGCCATAAAA

mRNA sequence

AATTCTTTTCTACATGGAAAGCAAATTTCTCCTCTTGTCATGAGAGGCGAATGGATTCTAAATTACTTCAACCAATATGAACAAGCTAGGATTAAGTCACATACCGCTAACAGGAGTACCGCTACTTCTCAAGCCCATCAGCAATGGAGACCTCCAGCAGAAAATTCCTTTAAATTGAACACGGACGTGGCTTGTAGACCAAATTTATCTTCCATCGGGGCTGTGCTTCGTGATTCAAATGGTTTCCTTGTTGCGGCAACAATGATTCAACATCCTTCTCCCCTGCCTCCTCTGTTGACGGAAATTTGGGGAATTTTGGAAGCCATAAAA

Coding sequence (CDS)

AATTCTTTTCTACATGGAAAGCAAATTTCTCCTCTTGTCATGAGAGGCGAATGGATTCTAAATTACTTCAACCAATATGAACAAGCTAGGATTAAGTCACATACCGCTAACAGGAGTACCGCTACTTCTCAAGCCCATCAGCAATGGAGACCTCCAGCAGAAAATTCCTTTAAATTGAACACGGACGTGGCTTGTAGACCAAATTTATCTTCCATCGGGGCTGTGCTTCGTGATTCAAATGGTTTCCTTGTTGCGGCAACAATGATTCAACATCCTTCTCCCCTGCCTCCTCTGTTGACGGAAATTTGGGGAATTTTGGAAGCCATAAAA

Protein sequence

NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLTEIWGILEAIK

Homology

[Close]

BLAST of MC06g0055 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 100 bits (248), Expect = 9.01e-22
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 0


Query: 1    NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLN 60
            NS +HGKQ+SP+  + EW+  + + + QA++ +++    +      Q WRP +  S KLN
Sbjct: 1246 NSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVVQYWRPSSSVSLKLN 1305

Query: 61   TDVACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLTEIWGILEAIK 110
            TD ACR   +S G ++RDS+  LVAAT I+ P PL PLL EI  ILE +K
Sbjct: 1306 TDAACRGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLK 1355

[Close]

BLAST of MC06g0055 vs. NCBI nr
Match: XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 2.87e-19
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = 0


Query: 1   NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLN 60
           NS  HG  +S   +R  WI +YF  Y QA+     + + ++      +W PP +++ K+N
Sbjct: 67  NSXAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRDSAMKVN 126

Query: 61  TDVACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLTEIWGILEAIK 110
           +D ACR   + +G ++RD  G L+ A  +  P PL PL  EI GILEA+K
Sbjct: 127 SDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALK 176

[Close]

BLAST of MC06g0055 vs. NCBI nr
Match: XP_017251987.1 (PREDICTED: uncharacterized protein LOC108222599 [Daucus carota subsp. sativus])

HSP 1 Score: 62.0 bits (149), Expect = 1.91e-08
Identity = 36/107 (33.64%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 8   QISPLVMRGEWILNYFNQYEQARIKSHTA--NRSTATSQAHQQWRPPAENSFKLNTDVAC 67
           +I P     E   N  +++ +AR +   A  NRS A S ++++WRPP +   K+N D + 
Sbjct: 231 RIVPANTAMELAFNTIHKWRKARKQEEPASTNRSNADSLSNRKWRPPPQGMLKVNVDASV 290

Query: 68  RPNLS--SIGAVLRDSNGFLVAATMIQHPSPLPPLLTEIWGILEAIK 110
            P     S+G V+RD NG  +AA ++  P P   L  E  G+ EA+ 
Sbjct: 291 FPRSETFSVGNVVRDHNGMFIAAKVMSLPRPATILEAESIGVREALS 337

[Close]

BLAST of MC06g0055 vs. NCBI nr
Match: CAB4273199.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 60.5 bits (145), Expect = 2.86e-08
Identity = 35/112 (31.25%), Postives = 58/112 (51.79%), Query Frame = 0


Query: 1   NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLN 60
           N  L G Q +P  +  +   +Y ++++ + + +H   RS ++     +WRPP  N FKLN
Sbjct: 17  NEVLFGSQPTPSGVLVKRAKDYDDEFKWSSVANH---RSLSSPVRDVKWRPPTGNCFKLN 76

Query: 61  TDVAC--RPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLTEIWGILEAIK 110
            D A    P     GA++RDS G LV A  ++ PS +  L TE++ +   + 
Sbjct: 77  VDGATDMEPGARGAGAIVRDSQGNLVGALAMRAPSRISVLATELYALKVGLS 125

[Close]

BLAST of MC06g0055 vs. NCBI nr
Match: XP_030478232.1 (uncharacterized protein LOC115695297 [Cannabis sativa])

HSP 1 Score: 57.8 bits (138), Expect = 3.53e-07
Identity = 33/112 (29.46%), Postives = 52/112 (46.43%), Query Frame = 0


Query: 1   NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLN 60
           N   HG +  P  +   + ++Y  +Y+ AR K   A  S A+  A   W  P     KLN
Sbjct: 38  NKERHGSKTKPPEIALYFAIDYLEEYQAARPKPANATTSAASVSADSPWMNPPSGRLKLN 97

Query: 61  TD--VACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLTEIWGILEAIK 110
           TD  V+   N S  GAVLR++ G +VA   +       P + E   ++ +++
Sbjct: 98  TDAAVSTMENKSGFGAVLRNNTGDIVAVMAMPFQGRFKPEIMEAMALIYSLQ 149

[Close]

BLAST of MC06g0055 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 4.36e-22
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 0


Query: 1    NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLN 60
            NS +HGKQ+SP+  + EW+  + + + QA++ +++    +      Q WRP +  S KLN
Sbjct: 1246 NSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVVQYWRPSSSVSLKLN 1305

Query: 61   TDVACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLTEIWGILEAIK 110
            TD ACR   +S G ++RDS+  LVAAT I+ P PL PLL EI  ILE +K
Sbjct: 1306 TDAACRGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLK 1355

[Close]

BLAST of MC06g0055 vs. ExPASy TrEMBL
Match: A0A6J1BQ49 (uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004786 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.39e-19
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = 0


Query: 1   NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLN 60
           NS  HG  +S   +R  WI +YF  Y QA+     + + ++      +W PP +++ K+N
Sbjct: 67  NSXAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRDSAMKVN 126

Query: 61  TDVACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLTEIWGILEAIK 110
           +D ACR   + +G ++RD  G L+ A  +  P PL PL  EI GILEA+K
Sbjct: 127 SDAACRSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALK 176

[Close]

BLAST of MC06g0055 vs. ExPASy TrEMBL
Match: A0A6J5UA97 (RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20439 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.39e-08
Identity = 35/112 (31.25%), Postives = 58/112 (51.79%), Query Frame = 0


Query: 1   NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLN 60
           N  L G Q +P  +  +   +Y ++++ + + +H   RS ++     +WRPP  N FKLN
Sbjct: 17  NEVLFGSQPTPSGVLVKRAKDYDDEFKWSSVANH---RSLSSPVRDVKWRPPTGNCFKLN 76

Query: 61  TDVAC--RPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLTEIWGILEAIK 110
            D A    P     GA++RDS G LV A  ++ PS +  L TE++ +   + 
Sbjct: 77  VDGATDMEPGARGAGAIVRDSQGNLVGALAMRAPSRISVLATELYALKVGLS 125

[Close]

BLAST of MC06g0055 vs. ExPASy TrEMBL
Match: A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.18e-07
Identity = 34/110 (30.91%), Postives = 54/110 (49.09%), Query Frame = 0


Query: 1   NSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLN 60
           ++ ++ K+I   +++ EWIL Y    E+ R+K H   +         +WRPP     K+N
Sbjct: 24  DALINKKKIPEALIKVEWILKYA---EEVRMKYHNGMKRRIPRV--NEWRPPLGGVVKMN 83

Query: 61  TDVACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLTEIWGILEAIK 110
           TD A     S +G +LR+ N  +V A M+       PLL +I  I E + 
Sbjct: 84  TDAAVSEEGSGVGVLLREGNAEIVGA-MVDFHMVKTPLLAKILAIREGLS 127

[Close]

BLAST of MC06g0055 vs. ExPASy TrEMBL
Match: A0A803Q1A0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.55e-07
Identity = 34/92 (36.96%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 21  NYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVAC--RPNLSSIGAVLRD 80
           +Y   Y+ A+ K     + T+  +  Q+W PP   S KLNTD A   R N +  GA++RD
Sbjct: 545 DYLEFYQAAQDKRGKQTQLTS-DRILQEWEPPPVGSLKLNTDAAISSRQNRTGGGALVRD 604

Query: 81  SNGFLVAATMIQHPSPLPPLLTEIWGILEAIK 110
             G ++AAT       L P   E W +LEA+K
Sbjct: 605 HAGKVLAATAFNRIGQLHPQAAEGWALLEALK 635

The following BLAST results are available for this feature:

BLAST of MC06g0055 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g0055 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158377.1	9.01e-22	43.64	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_022131661.1	2.87e-19	37.27	uncharacterized protein LOC111004786 [Momordica charantia]	[more]
XP_017251987.1	1.91e-08	33.64	PREDICTED: uncharacterized protein LOC108222599 [Daucus carota subsp. sativus]	[more]
CAB4273199.1	2.86e-08	31.25	unnamed protein product [Prunus armeniaca]	[more]
XP_030478232.1	3.53e-07	29.46	uncharacterized protein LOC115695297 [Cannabis sativa]	[more]

BLAST of MC06g0055 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX30	4.36e-22	43.64	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1BQ49	1.39e-19	37.27	uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A6J5UA97	1.39e-08	31.25	RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20...	[more]
A0A6J1DZK3	4.18e-07	30.91	uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A803Q1A0	5.55e-07	36.96	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of MC06g0055 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0055.1	MC06g0055.1	mRNA