MC06g0009 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0009
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	MC06: 91751 .. 92234 (+)
RNA-Seq Expression	MC06g0009
Synteny	MC06g0009

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAACTCAATTATTGCTCCCATTTGGAATTTTAAAATACCTAAGAAAATCAAAGTGTTCCTTTGGTCCTTGGCCTATAGAAGTTTAAATACTCAAAAGGTTCTTCAAAAGAAATACAGAAATTGGACTATTTCCCCCTCTATTGTTTGTGCAATTGTGAAGGTGAATCCTTAGACCACTTATTCATCAATTAGACCACTTATTCGTCCATTGTTCTTTTGCGGCCCGAGGCTGGGTCTTTCTGCTGCATTTTTTTTGGCATCTCAACCTGTTTTCCGAGATATATCAATGGATGGTTATATGAAGTCTTGATAGGTTGTCTTCACCTAGAAAGGCTAAGTTTCTATAGAACAGTGCGGCGACAGCTCTTATTTGGCACATTTGGTTAGAAAGGCATGGGCCCAAGTTTGAAGATAAGGATTCTACTTTTGACACTTTTAGTATGAAATGTACAGCATACAGCTTCTTGGTCATGTCTTGCAAA

mRNA sequence

AAGAACTCAATTATTGCTCCCATTTGGAATTTTAAAATACCTAAGAAAATCAAAGTGTTCCTTTGGTCCTTGGCCTATAGAAGTTTAAATACTCAAAAGGTTCTTCAAAAGAAATACAGAAATTGGACTATTTCCCCCTCTATTGTTTGTGCAATTGTGAAGGTGAATCCTCCACTTATTCATCAATTAGACCACTTATTCGTCCATTGTTCTTTTGCGGCCCGAGGCTGGGTCTTTCTGCTGTTTTTTGGCATCTCAACCTGTTTTCCGAGATATATCAATGGATGGTTATATGAAGTCTTGATAGGTTGTCTTCACCTAGAAAGGCTAAGTTTCTATAGAGCGGCGACAGCTCTTATTTGGCACATTTGGTTAGAAAGGCATGGGCCCAAGTTTGAAGATAAGGATTCTACTTTTGACACTTTTAGTATGAAATGTACAGCATACAGCTTCTTGGTCATGTCTTGCAAA

Coding sequence (CDS)

AAGAACTCAATTATTGCTCCCATTTGGAATTTTAAAATACCTAAGAAAATCAAAGTGTTCCTTTGGTCCTTGGCCTATAGAAGTTTAAATACTCAAAAGGTTCTTCAAAAGAAATACAGAAATTGGACTATTTCCCCCTCTATTGTTTGTGCAATTGTGAAGGTGAATCCTCCACTTATTCATCAATTAGACCACTTATTCGTCCATTGTTCTTTTGCGGCCCGAGGCTGGGTCTTTCTGCTGTTTTTTGGCATCTCAACCTGTTTTCCGAGATATATCAATGGATGGTTATATGAAGTCTTGATAGGTTGTCTTCACCTAGAAAGGCTAAGTTTCTATAGAGCGGCGACAGCTCTTATTTGGCACATTTGGTTAGAAAGGCATGGGCCCAAGTTTGAAGATAAGGATTCTACTTTTGACACTTTTAGTATGAAATGTACAGCATACAGCTTCTTGGTCATGTCTTGCAAA

Protein sequence

KNSIIAPIWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLFVHCSFAARGWVFLLFFGISTCFPRYINGWLYEVLIGCLHLERLSFYRAATALIWHIWLERHGPKFEDKDSTFDTFSMKCTAYSFLVMSCK

Homology

[Close]

BLAST of MC06g0009 vs. NCBI nr
Match: TYK31299.1 (protein FAM91A1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.61e-16
Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 3   SIIAPIWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQ 62
           S +  IW  KI KK+K FLWSLAYRSLN Q  LQ+K+ N ++SPSI    +K        
Sbjct: 226 STVNLIWKLKISKKVKFFLWSLAYRSLNIQNKLQRKFPNGSLSPSICYLCLKEA----EA 285

Query: 63  LDHLFVHCSFAARGW--VFLLFFGISTCFPRYINGWLYEVLIG 103
            DHLF+HC FA +GW  +F LF  +  C P+ I+  + + L G
Sbjct: 286 FDHLFLHCDFAFKGWNRIFDLF-ALDDCLPKKIDDGMKDGLTG 323

[Close]

BLAST of MC06g0009 vs. NCBI nr
Match: TYK07901.1 (DUF21 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 5.96e-14
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 3   SIIAP----IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPP 62
           SI+AP    IW  KI K++K FLWSLAYRSLNT K +QK +++  +SPS+ C   K    
Sbjct: 514 SIVAPLICHIWKTKILKQVKFFLWSLAYRSLNTHKKIQKSFQHTMLSPSMCCLCFKEE-- 573

Query: 63  LIHQLDHLFVHCSFAARGW 77
               LDHLF+HC+F  + W
Sbjct: 574 --ETLDHLFLHCTFTKKAW 588

[Close]

BLAST of MC06g0009 vs. NCBI nr
Match: RVW65318.1 (hypothetical protein CK203_058130 [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 2.38e-10
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 0


Query: 8   IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLF 67
           +WN ++P K+K F+W +A++ LNT  +LQ +  +  +SP+I    +K        +DHLF
Sbjct: 16  VWNSQVPFKVKSFVWLVAHKKLNTNDLLQLRRPHKALSPNICKLCMKHG----ETVDHLF 75

Query: 68  VHCSFAARGWVFLLFFG-ISTCFPRYINGWLYEVLIGCLHLER--LSFYRAATALIWHIW 127
           +HCS     W  L     +    PR I+   +    G    +R  + +  A  AL+W +W
Sbjct: 76  LHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVW 135

Query: 128 LERHGPKFEDK 135
            ER+   FEDK
Sbjct: 136 RERNARIFEDK 142

[Close]

BLAST of MC06g0009 vs. NCBI nr
Match: XP_030479135.1 (uncharacterized protein LOC115696374 [Cannabis sativa])

HSP 1 Score: 68.6 bits (166), Expect = 3.47e-10
Identity = 44/143 (30.77%), Postives = 73/143 (51.05%), Query Frame = 0


Query: 2   NSIIAPIWNFKIPK-----KIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVN 61
            ++  P W   + K     ++K+F+W +A+  +N   VLQ++     ISP   C   K N
Sbjct: 175 QNVARPPWTKSLWKSIALSRVKIFIWLVAHGKVNVHDVLQRRRPFILISPGW-CVCCKSN 234

Query: 62  PPLIHQLDHLFVHCSFAARGWVFLLF-FGISTCFPRYINGWLYEVLIGCLHLERLSFYRA 121
                +++HLF+HC F+++ W  LL  FG+    PR +   L   + G    + + +  A
Sbjct: 235 G---EEVEHLFLHCKFSSKLWSMLLEEFGLIWALPRSVPQMLMSKIKGSKR-QDILWKTA 294

Query: 122 ATALIWHIWLERHGPKFEDKDST 138
             A IW IWLER+   FED +++
Sbjct: 295 VLATIWAIWLERNTRIFEDVENS 312

[Close]

BLAST of MC06g0009 vs. NCBI nr
Match: RVW92607.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 4.15e-10
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 0


Query: 8   IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLF 67
           +WN ++P K+K F+W +A++ LNT  +LQ +  +  +SP+I    +K        +DHLF
Sbjct: 51  VWNSQVPFKVKSFVWLVAHKKLNTNDLLQLRRPHKALSPNICKLCMKHG----ETVDHLF 110

Query: 68  VHCSFAARGWVFLLFFG-ISTCFPRYINGWLYEVLIGCLHLER--LSFYRAATALIWHIW 127
           +HCS     W  L     +    PR I+   +    G    +R  + +  A  AL+W +W
Sbjct: 111 LHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVW 170

Query: 128 LERHGPKFEDK 135
            ER+   FEDK
Sbjct: 171 RERNARIFEDK 177

[Close]

BLAST of MC06g0009 vs. ExPASy TrEMBL
Match: A0A5D3E632 (Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005970 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.78e-17
Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 3   SIIAPIWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQ 62
           S +  IW  KI KK+K FLWSLAYRSLN Q  LQ+K+ N ++SPSI    +K        
Sbjct: 226 STVNLIWKLKISKKVKFFLWSLAYRSLNIQNKLQRKFPNGSLSPSICYLCLKEA----EA 285

Query: 63  LDHLFVHCSFAARGW--VFLLFFGISTCFPRYINGWLYEVLIG 103
            DHLF+HC FA +GW  +F LF  +  C P+ I+  + + L G
Sbjct: 286 FDHLFLHCDFAFKGWNRIFDLF-ALDDCLPKKIDDGMKDGLTG 323

[Close]

BLAST of MC06g0009 vs. ExPASy TrEMBL
Match: A0A5D3C7R2 (DUF21 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00110 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.89e-14
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 3   SIIAP----IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPP 62
           SI+AP    IW  KI K++K FLWSLAYRSLNT K +QK +++  +SPS+ C   K    
Sbjct: 514 SIVAPLICHIWKTKILKQVKFFLWSLAYRSLNTHKKIQKSFQHTMLSPSMCCLCFKEE-- 573

Query: 63  LIHQLDHLFVHCSFAARGW 77
               LDHLF+HC+F  + W
Sbjct: 574 --ETLDHLFLHCTFTKKAW 588

[Close]

BLAST of MC06g0009 vs. ExPASy TrEMBL
Match: A0A438FZH6 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_058130 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.15e-10
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 0


Query: 8   IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLF 67
           +WN ++P K+K F+W +A++ LNT  +LQ +  +  +SP+I    +K        +DHLF
Sbjct: 16  VWNSQVPFKVKSFVWLVAHKKLNTNDLLQLRRPHKALSPNICKLCMKHG----ETVDHLF 75

Query: 68  VHCSFAARGWVFLLFFG-ISTCFPRYINGWLYEVLIGCLHLER--LSFYRAATALIWHIW 127
           +HCS     W  L     +    PR I+   +    G    +R  + +  A  AL+W +W
Sbjct: 76  LHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVW 135

Query: 128 LERHGPKFEDK 135
            ER+   FEDK
Sbjct: 136 RERNARIFEDK 142

[Close]

BLAST of MC06g0009 vs. ExPASy TrEMBL
Match: A0A438I7G2 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_1099 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.01e-10
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 0


Query: 8   IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLF 67
           +WN ++P K+K F+W +A++ LNT  +LQ +  +  +SP+I    +K        +DHLF
Sbjct: 51  VWNSQVPFKVKSFVWLVAHKKLNTNDLLQLRRPHKALSPNICKLCMKHG----ETVDHLF 110

Query: 68  VHCSFAARGWVFLLFFG-ISTCFPRYINGWLYEVLIGCLHLER--LSFYRAATALIWHIW 127
           +HCS     W  L     +    PR I+   +    G    +R  + +  A  AL+W +W
Sbjct: 111 LHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVW 170

Query: 128 LERHGPKFEDK 135
            ER+   FEDK
Sbjct: 171 RERNARIFEDK 177

[Close]

BLAST of MC06g0009 vs. ExPASy TrEMBL
Match: A0A438H449 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_132 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.01e-10
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 0


Query: 8   IWNFKIPKKIKVFLWSLAYRSLNTQKVLQKKYRNWTISPSIVCAIVKVNPPLIHQLDHLF 67
           +WN ++P K+K F+W +A++ LNT  +LQ +  +  +SP+I    +K        +DHLF
Sbjct: 51  VWNSQVPFKVKSFVWLVAHKKLNTNDLLQLRRPHKALSPNICKLCMKHG----ETVDHLF 110

Query: 68  VHCSFAARGWVFLLFFG-ISTCFPRYINGWLYEVLIGCLHLER--LSFYRAATALIWHIW 127
           +HCS     W  L     +    PR I+   +    G    +R  + +  A  AL+W +W
Sbjct: 111 LHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVW 170

Query: 128 LERHGPKFEDK 135
            ER+   FEDK
Sbjct: 171 RERNARIFEDK 177

The following BLAST results are available for this feature:

BLAST of MC06g0009 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g0009 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK31299.1	1.61e-16	45.63	protein FAM91A1 [Cucumis melo var. makuwa]	[more]
TYK07901.1	5.96e-14	49.37	DUF21 domain-containing protein [Cucumis melo var. makuwa]	[more]
RVW65318.1	2.38e-10	32.06	hypothetical protein CK203_058130 [Vitis vinifera]	[more]
XP_030479135.1	3.47e-10	30.77	uncharacterized protein LOC115696374 [Cannabis sativa]	[more]
RVW92607.1	4.15e-10	32.06	putative ribonuclease H protein [Vitis vinifera]	[more]

BLAST of MC06g0009 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E632	7.78e-17	45.63	Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0059...	[more]
A0A5D3C7R2	2.89e-14	49.37	DUF21 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A438FZH6	1.15e-10	32.06	zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_058130 PE=4...	[more]
A0A438I7G2	2.01e-10	32.06	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_1099 ...	[more]
A0A438H449	2.01e-10	32.06	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_132 P...	[more]

BLAST of MC06g0009 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 4..77 e-value: 2.0E-9 score: 38.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC06g0009.1	MC06g0009.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity