MC05g_new0377 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC05g_new0377
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC05: 18569841 .. 18570774 (+)
RNA-Seq ExpressionMC05g_new0377
SyntenyMC05g_new0377
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACGTATGCACGTGTCCGTTGCGTTCATTAAATTGCAATGTAAAATTGGGTGCATGAATCGGAGGGAGGGGCAGTTAGGAGATTTCCTCCGCCTATGAATTTTCTACGGTAATAACATTAATAACATAAATATAATAATGTCCATGAATCTCGGAACTCCAATATTGCTCTCATAAACTCCTTACCATTTTATATAAAATCCAGTCAACCCTCCACGGTTACGCCGGTGACTCTCCCACTATTTCTTTTCTATCTCTGCTTTTAATTTTAATTTTCAATCCATTTCAAAATTTCTGTTCCGAGATGTCGCAGCGCTCCGGCAGCGGCAGGCACCACAGGCGGCCTTCGCAGGGCGTTTTCGTGGCGGCGGATTACCTGTCCGACCCGCCCGCCGCCGCTGAAGCTGCCCCGCAGCAGAGCCCGGTGGCTCGCCCGCCGTCGCAGCCGCAGATCCGAGCGGTGGCCAGGCCTCCTGCTCCGGCGGCCTCCAATGAAGCTCAGAAACCGCCGAGCTAGCGGGGATTCGGGATGCGACGTCGTTTTGTGGGATCCTGCATTGTGGAAGATGGAGTAGTAGGGTTTGTTTTCGATCTGTCGTTTCGTTTTCTTTTTTGTTTTAGTTGAGCATGGATTATGGAATTGGAATCTCAATGAAATTGTGGGGAAAAATTTGCAGTTAGATCTCAGCATTTTCATTTTTAATTTTTCTTTTCCCATAATCTGTTCCCCAGTGTTTTTATTTTCTGGCATTTTTCTATGTTGACCCGAAGAAAGCTGGTCTCTGCGTCTGGCGTTTTGCGGGCGGGAATCGGTGCTGGAACCCGACCCGCGCATCGAATTCGGCTTTCTTTTCTTTTTCTTTCCCCGTTTTTTGGTGGTTTTTGTAAAATAATAATAAATAAAAGCATGTTAAAATAAGGGCAATAAATTCC

mRNA sequence

ATGTCGCAGCGCTCCGGCAGCGGCAGGCACCACAGGCGGCCTTCGCAGGGCGTTTTCGTGGCGGCGGATTACCTGTCCGACCCGCCCGCCGCCGCTGAAGCTGCCCCGCAGCAGAGCCCGGTGGCTCGCCCGCCGTCGCAGCCGCAGATCCGAGCGGTGGCCAGGCCTCCTGCTCCGGCGGCCTCCAATGAAGCTCAGAAACCGCCGAGCTAG

Coding sequence (CDS)

ATGTCGCAGCGCTCCGGCAGCGGCAGGCACCACAGGCGGCCTTCGCAGGGCGTTTTCGTGGCGGCGGATTACCTGTCCGACCCGCCCGCCGCCGCTGAAGCTGCCCCGCAGCAGAGCCCGGTGGCTCGCCCGCCGTCGCAGCCGCAGATCCGAGCGGTGGCCAGGCCTCCTGCTCCGGCGGCCTCCAATGAAGCTCAGAAACCGCCGAGCTAG

Protein sequence

MSQRSGSGRHHRRPSQGVFVAADYLSDPPAAAEAAPQQSPVARPPSQPQIRAVARPPAPAASNEAQKPPS
Homology
BLAST of MC05g_new0377 vs. NCBI nr
Match: KAG6580559.1 (hypothetical protein SDJN03_20561, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.0 bits (149), Expect = 1.16e-10
Identity = 42/77 (54.55%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 1  MSQRSGSGRHHRRPSQGVFVAADYLSDPPAAA-------EAAPQQSPVARPPSQPQIR-- 60
          MSQR G  RH RRPSQ VF+AADYLS+PP A         A P  + + RPP Q +    
Sbjct: 1  MSQRQG--RHQRRPSQSVFIAADYLSEPPRATGPGSAVEHAGPHSAHLPRPPQQSRNADP 60

Query: 61 AVARPPAPAASNEAQKP 68
          A  RPPAPAASNEA  P
Sbjct: 61 AAPRPPAPAASNEAPNP 75

BLAST of MC05g_new0377 vs. NCBI nr
Match: KAG6596419.1 (hypothetical protein SDJN03_09599, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.6 bits (148), Expect = 1.64e-10
Identity = 43/79 (54.43%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 1  MSQRSGSGRHHRRPSQGVFVAADYLSDPPAAA-------EAAPQQSPVARPPSQPQIR-- 60
          MSQRSG  RH RRPSQGVF+ ADYLS+PP             PQ S ++RPP Q +    
Sbjct: 1  MSQRSG--RHQRRPSQGVFMTADYLSEPPPPTGPPLPVESVDPQSSFLSRPPPQSRYADP 60

Query: 61 AVARPPAPAASNEAQKPPS 70
            ARPPAPA SNEA  P S
Sbjct: 61 PAARPPAPAVSNEAPNPAS 77

BLAST of MC05g_new0377 vs. NCBI nr
Match: KAA0044076.1 (hypothetical protein E6C27_scaffold236G004240 [Cucumis melo var. makuwa] >TYK25061.1 hypothetical protein E5676_scaffold352G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.01e-09
Identity = 40/81 (49.38%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 1  MSQRSGSGRHHRRPSQGVFVAADYLSDPP---------AAAEAAPQQSPVARPPSQPQIR 60
          MSQR G  RH RRPSQGVF+AADYLS+PP               P  + + RPP Q +  
Sbjct: 1  MSQRPG--RHQRRPSQGVFMAADYLSEPPPPPVIGPGSTVESGGPHSALLTRPPQQSRNA 60

Query: 61 --AVARPPAPAASNEAQKPPS 70
               RPPAPAA+N+AQ P S
Sbjct: 61 DPVAPRPPAPAAANDAQNPAS 79

BLAST of MC05g_new0377 vs. NCBI nr
Match: KGN58888.1 (hypothetical protein Csa_002334 [Cucumis sativus])

HSP 1 Score: 46.2 bits (108), Expect = 2.05e-04
Identity = 38/82 (46.34%), Postives = 43/82 (52.44%), Query Frame = 0

Query: 1  MSQRSGSGRHHRRPSQGVFVAADYLSDPP-------AAAEAAPQQSPVARPPSQPQIRA- 60
          MSQR    RH RRPSQGVF+ ADYLSDPP             P  S +   P+Q    A 
Sbjct: 1  MSQRPS--RHQRRPSQGVFMPADYLSDPPPPVGPGSTVESGGPHSSTLLTRPTQQSRSAD 60

Query: 61 --VARPPAP--AASNEAQKPPS 70
             ARPPAP   A+N+A  P S
Sbjct: 61 PVAARPPAPPAVANNDAPNPAS 80

BLAST of MC05g_new0377 vs. NCBI nr
Match: PIN11955.1 (hypothetical protein CDL12_15420 [Handroanthus impetiginosus])

HSP 1 Score: 45.1 bits (105), Expect = 5.10e-04
Identity = 30/59 (50.85%), Postives = 33/59 (55.93%), Query Frame = 0

Query: 1  MSQRSGSGRHHRRPSQGVFVAADYLSDPPAAAEAAPQQSPVARPPSQPQIRAVARPPAP 59
          MSQR+   RH RRPSQGVFV  D LSDPP    A P     A PP Q +     +PP P
Sbjct: 1  MSQRTN--RHQRRPSQGVFVMPDNLSDPPLEDIAPPPTVAQAPPPPQEKSGGGVKPPQP 57

BLAST of MC05g_new0377 vs. ExPASy TrEMBL
Match: A0A5A7TPQ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001830 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.94e-09
Identity = 40/81 (49.38%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 1  MSQRSGSGRHHRRPSQGVFVAADYLSDPP---------AAAEAAPQQSPVARPPSQPQIR 60
          MSQR G  RH RRPSQGVF+AADYLS+PP               P  + + RPP Q +  
Sbjct: 1  MSQRPG--RHQRRPSQGVFMAADYLSEPPPPPVIGPGSTVESGGPHSALLTRPPQQSRNA 60

Query: 61 --AVARPPAPAASNEAQKPPS 70
               RPPAPAA+N+AQ P S
Sbjct: 61 DPVAPRPPAPAAANDAQNPAS 79

BLAST of MC05g_new0377 vs. ExPASy TrEMBL
Match: A0A0A0LAM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734895 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 9.90e-05
Identity = 38/82 (46.34%), Postives = 43/82 (52.44%), Query Frame = 0

Query: 1  MSQRSGSGRHHRRPSQGVFVAADYLSDPP-------AAAEAAPQQSPVARPPSQPQIRA- 60
          MSQR    RH RRPSQGVF+ ADYLSDPP             P  S +   P+Q    A 
Sbjct: 1  MSQRPS--RHQRRPSQGVFMPADYLSDPPPPVGPGSTVESGGPHSSTLLTRPTQQSRSAD 60

Query: 61 --VARPPAP--AASNEAQKPPS 70
             ARPPAP   A+N+A  P S
Sbjct: 61 PVAARPPAPPAVANNDAPNPAS 80

BLAST of MC05g_new0377 vs. ExPASy TrEMBL
Match: A0A2G9H363 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_15420 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 2.47e-04
Identity = 30/59 (50.85%), Postives = 33/59 (55.93%), Query Frame = 0

Query: 1  MSQRSGSGRHHRRPSQGVFVAADYLSDPPAAAEAAPQQSPVARPPSQPQIRAVARPPAP 59
          MSQR+   RH RRPSQGVFV  D LSDPP    A P     A PP Q +     +PP P
Sbjct: 1  MSQRTN--RHQRRPSQGVFVMPDNLSDPPLEDIAPPPTVAQAPPPPQEKSGGGVKPPQP 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6580559.11.16e-1054.55hypothetical protein SDJN03_20561, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6596419.11.64e-1054.43hypothetical protein SDJN03_09599, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0044076.14.01e-0949.38hypothetical protein E6C27_scaffold236G004240 [Cucumis melo var. makuwa] >TYK250... [more]
KGN58888.12.05e-0446.34hypothetical protein Csa_002334 [Cucumis sativus][more]
PIN11955.15.10e-0450.85hypothetical protein CDL12_15420 [Handroanthus impetiginosus][more]
Match NameE-valueIdentityDescription
A0A5A7TPQ11.94e-0949.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LAM09.90e-0546.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734895 PE=4 SV=1[more]
A0A2G9H3632.47e-0450.85Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_15420 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC05g_new0377.1MC05g_new0377.1mRNA