MC05g_new0375 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC05g_new0375
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC05: 18430417 .. 18431495 (-)
RNA-Seq ExpressionMC05g_new0375
SyntenyMC05g_new0375
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCACGTGAAACGTTAGTTAATTAAGAAGAAGATCGTTAGGTGTTTATATTGTAAGGAAAAAAAAGTCTCTCCAAATGTTACTCAAATTTAAAAATAAAAATAAAAACCCTAATAAATTGAAACTTTGTTATAAGTTGAGAGATGAAATAAATACAATTCTTAGAGAGAGACAAGTAATGGAATTAAGTTCATTGTAGAGAGAGAGAGCAAGCGAAATTCAGATCAAAATCAGAAGAAGAAGAAGAAAGATGAAGAACAAGAACAGAGCAAATTCGAAACTCAGAAGCGATTACCATTTAATTTCTTCCAGTGCTGTGCTCCACAACATCTACACTCGCAGCACACGACAAAATCCTCCGAAAAATCCCAAACAGAATACAACTGCACGAAAATTCCTTCATCTTCCTCCAATTCCAGATCAAACACTTCCTCTTCCGATTCCTACTCTTAACGCCTCTTCTCCTCTTTCTCTCGCCTATCTTCTCCTTCACTCTCCCCAAACACCGCCTCGTTTTCTCCGGCACCGATTCCTTCCTCGAGAATTTGTAGCTCCGCAAGTACATTTGCCTGCACGACACTCCATCGGCCACCAGAACTCGCCGCCTCGCTCGCGAACTCGCCGATTTGGCGATCTCCGCGTCCGAATCCGTCCAACTGTGGAGGTTGATGTACGCGCCCCGCGGCGGACGGCCGGCGTCGCTGATGCAGTAGCTCGCCGTGCAGAGGGAGCTCATTTTTCGGAAGCTTTTTCGCCGATCGTTAATGGGGGAGAACGGAGTGGAGAATCTGGAGCGCTAGCGGAAGATTGATCGAAGGATCTATCTGAGAGTGAGCGAGAGAGAAAGAAGAGGGATTGTCCTTATTGATTTGTTTGTTTTGTAAAGGAAATTTGGGGGAAATCTCAATTTCATCACATGGAGCAAAAATGGATCCGATGCATTTTTTTATTTTGTTTTTCGCACAAATTGATTTATTTTATTTATTTTTTGTCAGTTAGATAAACGGTCTAATATTGACATTATTAATAATATATAGGAAAGAGTTCATTTTTTTATACCAAAACATGGCAAATTGTAT

mRNA sequence

ATGAAGAACAAGAACAGAGCAAATTCGAAACTCAGAAGCGATTACCATTTAATTTCTTCCAGTGCTGTGCTCCACAACATCTACACTCGCAGCACACGACAAAATCCTCCGAAAAATCCCAAACAGAATACAACTGCACGAAAATTCCTTCATCTTCCTCCAATTCCAGATCAAACACTTCCTCTTCCGATTCCTACTCTTAACGCCTCTTCTCCTCTTTCTCTCGCCTATCTTCTCCTTCACTCTCCCCAAACACCGCCTCGTTTTCTCCGGCACCGATTCCTTCCTCGAGAATTTGTAGCTCCGCAAGTACATTTGCCTGCACGACACTCCATCGGCCACCAGAACTCGCCGCCTCGCTCGCGAACTCGCCGATTTGGCGATCTCCGCGTCCGAATCCGTCCAACTGTGGAGGTTGATGTACGCGCCCCGCGGCGGACGGCCGGCGTCGCTGATGCAGTAGCTCGCCGTGCAGAGGGAGCTCATTTTTCGGAAGCTTTTTCGCCGATCGTTAATGGGGGAGAACGGAGTGGAGAATCTGGAGCGCTAGCGGAAGATTGA

Coding sequence (CDS)

ATGAAGAACAAGAACAGAGCAAATTCGAAACTCAGAAGCGATTACCATTTAATTTCTTCCAGTGCTGTGCTCCACAACATCTACACTCGCAGCACACGACAAAATCCTCCGAAAAATCCCAAACAGAATACAACTGCACGAAAATTCCTTCATCTTCCTCCAATTCCAGATCAAACACTTCCTCTTCCGATTCCTACTCTTAACGCCTCTTCTCCTCTTTCTCTCGCCTATCTTCTCCTTCACTCTCCCCAAACACCGCCTCGTTTTCTCCGGCACCGATTCCTTCCTCGAGAATTTGTAGCTCCGCAAGTACATTTGCCTGCACGACACTCCATCGGCCACCAGAACTCGCCGCCTCGCTCGCGAACTCGCCGATTTGGCGATCTCCGCGTCCGAATCCGTCCAACTGTGGAGGTTGATGTACGCGCCCCGCGGCGGACGGCCGGCGTCGCTGATGCAGTAGCTCGCCGTGCAGAGGGAGCTCATTTTTCGGAAGCTTTTTCGCCGATCGTTAATGGGGGAGAACGGAGTGGAGAATCTGGAGCGCTAGCGGAAGATTGA

Protein sequence

MKNKNRANSKLRSDYHLISSSAVLHNIYTRSTRQNPPKNPKQNTTARKFLHLPPIPDQTLPLPIPTLNASSPLSLAYLLLHSPQTPPRFLRHRFLPREFVAPQVHLPARHSIGHQNSPPRSRTRRFGDLRVRIRPTVEVDVRAPRRTAGVADAVARRAEGAHFSEAFSPIVNGGERSGESGALAED
Homology
[Close]
BLAST of MC05g_new0375 vs. NCBI nr
Match: KAF7832780.1 (uncharacterized protein G2W53_015113 [Senna tora])

HSP 1 Score: 57.8 bits (138), Expect = 9.74e-07
Identity = 39/75 (52.00%), Postives = 45/75 (60.00%), Query Frame = 0 

Query: 24  LHNIYTRSTRQNPPKNPKQNTTARKFLHLPPIPDQTLPLPIPTLNASSPLSLAYLLLHSP 83
           +HNIYT S RQ P +NPKQN  AR F HLPP  +QTLPLP   +          LLLHSP
Sbjct: 51  IHNIYTSSARQEPVENPKQNR-ARDFSHLPP--NQTLPLPRRWM---------LLLLHSP 110

Query: 84  QTPPRFLRHRFLPRE 98
           +   RFLR   L R+
Sbjct: 111 EALLRFLRQDLLQRD 113

[Close]
BLAST of MC05g_new0375 vs. NCBI nr
Match: KAF7832898.1 (uncharacterized protein G2W53_015231 [Senna tora])

HSP 1 Score: 56.6 bits (135), Expect = 1.23e-06
Identity = 43/90 (47.78%), Postives = 51/90 (56.67%), Query Frame = 0 

Query: 11 LRSDYHLISSSAVL--HNIYTRSTRQNPPKNPKQNTTARKFLHLPPIPDQTLPLPIPTLN 70
          LR+    I  S +L  HNIY+ STRQ P +NPKQ+  AR F HLPP  +QTLPLP     
Sbjct: 12 LRASDSGIKKSIILFIHNIYSSSTRQEPVENPKQSR-ARDFPHLPP--NQTLPLP----- 71

Query: 71 ASSPLSLAYLLLHSPQTPPRFLRHRFLPRE 98
                   LLLHSP+   RFLR   L R+
Sbjct: 72 ----RQRRLLLLHSPEAHLRFLRQDLLQRD 89

[Close]
BLAST of MC05g_new0375 vs. NCBI nr
Match: KAF7832724.1 (uncharacterized protein G2W53_015057 [Senna tora])

HSP 1 Score: 55.5 bits (132), Expect = 3.27e-06
Identity = 38/75 (50.67%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 24 LHNIYTRSTRQNPPKNPKQNTTARKFLHLPPIPDQTLPLPIPTLNASSPLSLAYLLLHSP 83
          +HNIYT S RQ P +NPKQ+  AR F HLPP  +QTLPLP              LLLHSP
Sbjct: 16 IHNIYTISARQEPVENPKQSR-ARDFPHLPP--NQTLPLP---------RQRRLLLLHSP 75

Query: 84 QTPPRFLRHRFLPRE 98
          +   RFLR   L R+
Sbjct: 76 EALTRFLRQDLLQRD 78

[Close]
BLAST of MC05g_new0375 vs. NCBI nr
Match: KAF7832857.1 (uncharacterized protein G2W53_015190 [Senna tora])

HSP 1 Score: 54.7 bits (130), Expect = 5.36e-06
Identity = 40/84 (47.62%), Postives = 48/84 (57.14%), Query Frame = 0 

Query: 17 LISSSAVL--HNIYTRSTRQNPPKNPKQNTTARKFLHLPPIPDQTLPLPIPTLNASSPLS 76
          L+  S +L  HNIY+ S RQ P +NPKQN  AR F HLPP  +QTLPLP           
Sbjct: 9  LLKKSIILFIHNIYSSSARQEPVENPKQNR-ARDFPHLPP--NQTLPLP---------RR 68

Query: 77 LAYLLLHSPQTPPRFLRHRFLPRE 98
             LLLHSP+   RFL+   L R+
Sbjct: 69 RRLLLLHSPEALLRFLQQDLLQRD 80

[Close]
BLAST of MC05g_new0375 vs. NCBI nr
Match: KAF7832723.1 (uncharacterized protein G2W53_015056 [Senna tora])

HSP 1 Score: 54.3 bits (129), Expect = 9.00e-06
Identity = 42/90 (46.67%), Postives = 49/90 (54.44%), Query Frame = 0 

Query: 11 LRSDYHLISSSAVL--HNIYTRSTRQNPPKNPKQNTTARKFLHLPPIPDQTLPLPIPTLN 70
          LR+    I  S +L  HNIYT S RQ P +NPKQ   AR F HLPP  +QT+PLP     
Sbjct: 12 LRASDFGIKKSIILFIHNIYTSSARQEPVENPKQGR-ARDFPHLPP--NQTIPLP----- 71

Query: 71 ASSPLSLAYLLLHSPQTPPRFLRHRFLPRE 98
                   LLLHSP+   RFLR   L R+
Sbjct: 72 ----RRRRLLLLHSPEALLRFLRQDLLQRD 89

The following BLAST results are available for this feature:
BLAST of MC05g_new0375 vs.
Match NameE-valueIdentityDescription
BLAST of MC05g_new0375 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7832780.19.74e-0752.00uncharacterized protein G2W53_015113 [Senna tora][more]
KAF7832898.11.23e-0647.78uncharacterized protein G2W53_015231 [Senna tora][more]
KAF7832724.13.27e-0650.67uncharacterized protein G2W53_015057 [Senna tora][more]
KAF7832857.15.36e-0647.62uncharacterized protein G2W53_015190 [Senna tora][more]
KAF7832723.19.00e-0646.67uncharacterized protein G2W53_015056 [Senna tora][more]
BLAST of MC05g_new0375 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MC05g_new0375 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..186

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC05g_new0375.1MC05g_new0375.1mRNA