MC05g_new0342 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g_new0342
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Phytosulfokine-beta
Location	MC05: 17374938 .. 17375638 (+)
RNA-Seq Expression	MC05g_new0342
Synteny	MC05g_new0342

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCCTTCTTTGGGTGTCTCCATGTGACTTGAAAAAGGCCAAAACCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTTCAAAAACTCCATTAAGAGTGAGTGAGGAAACAAAAAATGAAGAACAATTTCCATGCCTTCTTCTTCTTCTTCATTTTCCTTCTCCTCTCCCAATTAGCCTCTGCCCGTTTCCCACCATACAAACAAGGTAAAACCCACTTCCAAAAACTCTTCCTTTTTCACTCTAATTTCCAATTTTATTTTCCTTCTGATTTTCCCGGAAAATTTGCAGGTCAGGCAGAGACCCAGAAGAAGCTCAGCCATGGAATCGCCCAAGAGAATTCATGGCCAGAAGACTTCTCCTATGTAATTAAACGAGATTTTTTTTTTGCCTTCTTTTTTTTTTTTTGTTATTTGGATTTTAATGGGGCTGTTCTGCTTTTCTTCTGTAGATGATGGGAGGAAGAGAGAAGGGAGAAGATGAAGAAGATGAAGAATGGGGGAAGAGAAGAATGATGCAACAAGCACACTTGGATTATGTTTACACACAGATTGAAAACCCTTGAATTTAATTCTCAAGATATGTTTATGTACATATCCAAAATACTAAAACAAATTGTTGCTATTTTCATCCTTTTATTATATGATATAATAATATCTTATATATAGTATTTACAAGGGTTCATATATTAATGTTTCT

mRNA sequence

ATGAAGAACAATTTCCATGCCTTCTTCTTCTTCTTCATTTTCCTTCTCCTCTCCCAATTAGCCTCTGCCCGTTTCCCACCATACAAACAAGGTCAGGCAGAGACCCAGAAGAAGCTCAGCCATGGAATCGCCCAAGAGAATTCATGGCCAGAAGACTTCTCCTATATGATGGGAGGAAGAGAGAAGGGAGAAGATGAAGAAGATGAAGAATGGGGGAAGAGAAGAATGATGCAACAAGCACACTTGGATTATGTTTACACACAGATTGAAAACCCTTGA

Coding sequence (CDS)

ATGAAGAACAATTTCCATGCCTTCTTCTTCTTCTTCATTTTCCTTCTCCTCTCCCAATTAGCCTCTGCCCGTTTCCCACCATACAAACAAGGTCAGGCAGAGACCCAGAAGAAGCTCAGCCATGGAATCGCCCAAGAGAATTCATGGCCAGAAGACTTCTCCTATATGATGGGAGGAAGAGAGAAGGGAGAAGATGAAGAAGATGAAGAATGGGGGAAGAGAAGAATGATGCAACAAGCACACTTGGATTATGTTTACACACAGATTGAAAACCCTTGA

Protein sequence

MKNNFHAFFFFFIFLLLSQLASARFPPYKQGQAETQKKLSHGIAQENSWPEDFSYMMGGREKGEDEEDEEWGKRRMMQQAHLDYVYTQIENP

Homology

[Close]

BLAST of MC05g_new0342 vs. NCBI nr
Match: XP_022983167.1 (uncharacterized protein LOC111481800 [Cucurbita maxima])

HSP 1 Score: 105 bits (263), Expect = 2.07e-27
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 1  MKNNFHAFFFFF-----IFLLLSQLASARFPPYKQGQAETQKKLSHGIAQENSWPEDFSY 60
          M  + H FFFFF     IFLL SQ  SARFP  KQG  ET +KL+HG+ Q +SW  DF +
Sbjct: 1  MNQSSHGFFFFFFSFLFIFLLFSQSTSARFPAAKQGLGETHEKLTHGVVQADSWA-DFPH 60

Query: 61 MMGGREKGEDEEDEEWGKRRMMQQAHLDYVYTQ 88
          ++GGREKGE+EE+E W KR+MM +AHLDYVYTQ
Sbjct: 61 IIGGREKGEEEEEEGWEKRKMMLEAHLDYVYTQ 92

[Close]

BLAST of MC05g_new0342 vs. NCBI nr
Match: XP_023528216.1 (putative phytosulfokines 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103 bits (257), Expect = 1.70e-26
Identity = 58/94 (61.70%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 1  MKNNFHAFFFFF------IFLLLSQLASARFPPYKQGQAETQKKLSHGIAQENSWPEDFS 60
          M  + H FFFFF      IFLL SQ ASARFP  KQG  ET +KL+HG+ Q +SW  DF 
Sbjct: 1  MNQSSHGFFFFFFFSFLFIFLLFSQSASARFPAAKQGLGETHEKLTHGVVQADSWA-DFP 60

Query: 61 YMMGGREKGEDEEDEEWGKRRMMQQAHLDYVYTQ 88
          +M+GGREKGE+EE E W KR+MM +AHLDYVYTQ
Sbjct: 61 HMIGGREKGEEEE-EGWEKRKMMLEAHLDYVYTQ 92

[Close]

BLAST of MC05g_new0342 vs. NCBI nr
Match: XP_038906014.1 (uncharacterized protein LOC120091917 [Benincasa hispida])

HSP 1 Score: 103 bits (257), Expect = 2.32e-26
Identity = 62/108 (57.41%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 1   MKNNFHAFFFFF------IFLLLSQ-LASARFPPYKQGQAETQKKLSHGIAQENSWPEDF 60
           M  N H FFFFF      IFLL S   ASARFP  KQG  ET KK+SHG+ Q +SWP DF
Sbjct: 1   MNQNSHGFFFFFFLSFLFIFLLFSSHSASARFPSSKQGIEETHKKISHGMVQADSWP-DF 60

Query: 61  SYMMGGREKG---------EDEEDEEWGKRRMMQQAHLDYVYTQIENP 92
            ++MGGREKG         E+EE+EEW K +MM +AHLDYVYTQ E P
Sbjct: 61  PHIMGGREKGGGGGGGGEEEEEEEEEWEKGKMMLEAHLDYVYTQNEKP 107

[Close]

BLAST of MC05g_new0342 vs. NCBI nr
Match: XP_023005727.1 (putative phytosulfokines 6 [Cucurbita maxima])

HSP 1 Score: 102 bits (254), Expect = 4.10e-26
Identity = 56/91 (61.54%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 2  KNNFHAFFFFFIFLLLSQLASARFPPYKQGQAETQKKLSHGIAQENSWPEDFSYMMGGRE 61
           + F +FF+FFIFLLLSQ A+ARF P KQG  ET  KLSHG+ Q +SWP DF  ++    
Sbjct: 5  SHGFSSFFYFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQADSWP-DFPQII---- 64

Query: 62 KGEDEEDEEWGKRRMMQQAHLDYVYTQIENP 92
          + E+EEDEEW KRRMM +AHLDYVYTQ E P
Sbjct: 65 REEEEEDEEWEKRRMMLEAHLDYVYTQNEKP 90

[Close]

BLAST of MC05g_new0342 vs. NCBI nr
Match: KAG6580671.1 (hypothetical protein SDJN03_20673, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102 bits (254), Expect = 4.86e-26
Identity = 58/94 (61.70%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 1  MKNNFHAFFFFF------IFLLLSQLASARFPPYKQGQAETQKKLSHGIAQENSWPEDFS 60
          M  + H FFFFF      IFLL SQ ASARFP  KQG  ET +KL+HG  Q +SWP DF 
Sbjct: 1  MNQSSHGFFFFFFFSFLFIFLLFSQSASARFPAAKQGLGETHEKLTHGGVQADSWP-DFP 60

Query: 61 YMMGGREKGEDEEDEEWGKRRMMQQAHLDYVYTQ 88
          +++GGREKGE+EE E W KR+MM +AHLDYVYTQ
Sbjct: 61 HIIGGREKGEEEE-EGWEKRKMMLEAHLDYVYTQ 92

[Close]

BLAST of MC05g_new0342 vs. ExPASy TrEMBL
Match: A0A6J1IYI6 (Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111481800 PE=3 SV=1)

HSP 1 Score: 105 bits (263), Expect = 1.00e-27
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 1  MKNNFHAFFFFF-----IFLLLSQLASARFPPYKQGQAETQKKLSHGIAQENSWPEDFSY 60
          M  + H FFFFF     IFLL SQ  SARFP  KQG  ET +KL+HG+ Q +SW  DF +
Sbjct: 1  MNQSSHGFFFFFFSFLFIFLLFSQSTSARFPAAKQGLGETHEKLTHGVVQADSWA-DFPH 60

Query: 61 MMGGREKGEDEEDEEWGKRRMMQQAHLDYVYTQ 88
          ++GGREKGE+EE+E W KR+MM +AHLDYVYTQ
Sbjct: 61 IIGGREKGEEEEEEGWEKRKMMLEAHLDYVYTQ 92

[Close]

BLAST of MC05g_new0342 vs. ExPASy TrEMBL
Match: A0A6J1KTY7 (Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111498637 PE=3 SV=1)

HSP 1 Score: 102 bits (254), Expect = 1.98e-26
Identity = 56/91 (61.54%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 2  KNNFHAFFFFFIFLLLSQLASARFPPYKQGQAETQKKLSHGIAQENSWPEDFSYMMGGRE 61
           + F +FF+FFIFLLLSQ A+ARF P KQG  ET  KLSHG+ Q +SWP DF  ++    
Sbjct: 5  SHGFSSFFYFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQADSWP-DFPQII---- 64

Query: 62 KGEDEEDEEWGKRRMMQQAHLDYVYTQIENP 92
          + E+EEDEEW KRRMM +AHLDYVYTQ E P
Sbjct: 65 REEEEEDEEWEKRRMMLEAHLDYVYTQNEKP 90

[Close]

BLAST of MC05g_new0342 vs. ExPASy TrEMBL
Match: A0A6J1F9T2 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111442110 PE=3 SV=1)

HSP 1 Score: 102 bits (254), Expect = 2.35e-26
Identity = 58/94 (61.70%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 1  MKNNFHAFFFFF------IFLLLSQLASARFPPYKQGQAETQKKLSHGIAQENSWPEDFS 60
          M  + H FFFFF      IFLL SQ ASARFP  KQG  ET +KL+HG  Q +SWP DF 
Sbjct: 1  MNQSSHGFFFFFFFSFLFIFLLFSQSASARFPAAKQGLGETHEKLTHGGVQADSWP-DFP 60

Query: 61 YMMGGREKGEDEEDEEWGKRRMMQQAHLDYVYTQ 88
          +++GGREKGE+EE E W KR+MM +AHLDYVYTQ
Sbjct: 61 HIIGGREKGEEEE-EGWEKRKMMLEAHLDYVYTQ 92

[Close]

BLAST of MC05g_new0342 vs. ExPASy TrEMBL
Match: A0A6J1FSF0 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111447730 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.86e-23
Identity = 53/82 (64.63%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 11 FFIFLLLSQLASARFPPYKQGQAETQKKLSHGIAQENSWPEDFSYMMGGREKGEDEEDEE 70
          FFIFLLLSQ A+ARF P KQG  ET  KLSHG+ Q +SWP DF  ++      E+EEDEE
Sbjct: 9  FFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQPDSWP-DFPQIIR-----EEEEDEE 68

Query: 71 WGKRRMMQQAHLDYVYTQIENP 92
          W KRRMM +AHLDYVYTQ E P
Sbjct: 69 WEKRRMMLEAHLDYVYTQNEKP 84

[Close]

BLAST of MC05g_new0342 vs. ExPASy TrEMBL
Match: A0A1S4DUI1 (Phytosulfokine-beta OS=Cucumis melo OX=3656 GN=LOC107990603 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.50e-17
Identity = 54/106 (50.94%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 2   KNNFHAFFFFFIF------------LLLSQLASARFPPYKQGQAETQKKLSHG--IAQEN 61
             N H FFFFF F            L  S  ASARFPP K G  ET KK+S+G  +   +
Sbjct: 81  NRNSHGFFFFFFFFFFFISFLFILLLFSSHSASARFPPSKHGIEETHKKISYGSMVQSGD 140

Query: 62  SWPEDFSYMMGGREKGEDEEDEEWG-KRRMMQQAHLDYVYTQIENP 92
           SWP DF ++   REK E+E +EE G KR+MM +AHLDYVYTQ ENP
Sbjct: 141 SWP-DFPHVK--REKDEEEVEEEEGEKRKMMLEAHLDYVYTQHENP 183

The following BLAST results are available for this feature:

BLAST of MC05g_new0342 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g_new0342 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983167.1	2.07e-27	60.22	uncharacterized protein LOC111481800 [Cucurbita maxima]	[more]
XP_023528216.1	1.70e-26	61.70	putative phytosulfokines 6 [Cucurbita pepo subsp. pepo]	[more]
XP_038906014.1	2.32e-26	57.41	uncharacterized protein LOC120091917 [Benincasa hispida]	[more]
XP_023005727.1	4.10e-26	61.54	putative phytosulfokines 6 [Cucurbita maxima]	[more]
KAG6580671.1	4.86e-26	61.70	hypothetical protein SDJN03_20673, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MC05g_new0342 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IYI6	1.00e-27	60.22	Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111481800 PE=3 SV=1	[more]
A0A6J1KTY7	1.98e-26	61.54	Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111498637 PE=3 SV=1	[more]
A0A6J1F9T2	2.35e-26	61.70	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111442110 PE=3 SV=1	[more]
A0A6J1FSF0	1.86e-23	64.63	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111447730 PE=3 SV=1	[more]
A0A1S4DUI1	6.50e-17	50.94	Phytosulfokine-beta OS=Cucumis melo OX=3656 GN=LOC107990603 PE=3 SV=1	[more]

BLAST of MC05g_new0342 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 12..91 e-value: 1.2E-12 score: 48.7
IPR009438	Phytosulfokine	PANTHER	PTHR33285	PHYTOSULFOKINES 3	coord: 1..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..73
None	No IPR available	PANTHER	PTHR33285:SF33	PHYTOSULFOKINES 6-RELATED	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g_new0342.1	MC05g_new0342.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell population proliferation
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008083	growth factor activity