MC05g_new0248 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g_new0248
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LOW QUALITY PROTEIN: ATP-dependent helicase NAM7-like
Location	MC05: 12605517 .. 12606625 (+)
RNA-Seq Expression	MC05g_new0248
Synteny	MC05g_new0248

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTTCATCTTCCTCTAATCCACATAACAAAGAGAATGAGAAGAAGCGAGTGTTATGGCCTCCACCAACCAAATCAGGTATGATTTCTCTTGAACCTCCTAGGATTTCTTATGAAAAATTAGTTTTTGATCCTAGGGAACAACGAAGAAAATATGAGGAAGCTATAAAAATGAACCCTAGGAGAAATCTATCCATAGGTGGTACAAATTCTGAAAAAATTAATATGGAATCTAAGGATGCTAGGGTTAATAAAGAGGGTCATAGTGAGAAGAAATTAGGAGGAGTTAATAAAGTCTATCTTTGAAAAAAAATTAAACTTTAGAGGAAAAATGTGTTGTTTTAGATGAAGAAATAGCTAGACTTCAAGAGAGAGCGAAGATGTTCGGTAAAAATAACGAAATTAGGGATAAAAAGAATGAGAGGGTTTATGCGAAAATTGAGGAATTGAACATAAAATGGCAATAATTCATGGAAAACTCGAAGAAAGTGAGTGAGAAGATTCAACTTGAGTTAAATAGCATGAGTATACGTCGTAGGATGAATCTTTCTTAAGATAACCCCGTTTCCGAGTCTTTAGAACTATCTATCCCTCCCCCTCTTTCCACTATTGTTGCTGTGCATGTTGAAGGTCAAGAACGGGTTAGTGGAGACTCAGAACACGTCACGGAGCCCTTGGAGCACTCAGATTCGACCACGGTCGAAATTCAATGCCAAATTGCGCCTGGTACAATTATGGATGAGACTCCACCGTCCACTCTACAAGGTATTTTTTCTCCATGTTTTCAAGATCCTATCTTGACTAAAAAGTCCCTAGTTTTTTATGATTCAGAACAGGAAAGGACAACGCTGAAAATTACCAAAATTTTGGTGGCGTTGAATGAAGCAAGGGGAGAAGATCCATTGGAGGATGATGGAAACAGTAAGGCTGCACAAGGACAATTGAATGTTGATGGAGAGGATGAAGATCTCGGAGAACTACCCGAAGAAGTGCATGGAGATGAGTATGAAGACGAAGAAGAAAATGACGATATCTCTCAAAATGAAGTGAGAGTACGAACTCCGGTGCACGAATCTCAGGAAAATGGCGAGGAGCCCCCTGTATAA

mRNA sequence

ATGGAAGGTTCATCTTCCTCTAATCCACATAACAAAGAGAATGAGAAGAAGCGAGTGTTATGGCCTCCACCAACCAAATCAGGTCAAGAACGGGTTAGTGGAGACTCAGAACACGTCACGGAGCCCTTGGAGCACTCAGATTCGACCACGGTCGAAATTCAATGCCAAATTGCGCCTGGTACAATTATGGATGAGACTCCACCGTCCACTCTACAAGAACAGGAAAGGACAACGCTGAAAATTACCAAAATTTTGGTGGCGTTGAATGAAGCAAGGGGAGAAGATCCATTGGAGGATGATGGAAACAGTAAGGCTGCACAAGGACAATTGAATGTTGATGGAGAGGATGAAGATCTCGGAGAACTACCCGAAGAAGTGCATGGAGATGAGTATGAAGACGAAGAAGAAAATGACGATATCTCTCAAAATGAAGTGAGAGTACGAACTCCGGTGCACGAATCTCAGGAAAATGGCGAGGAGCCCCCTGTATAA

Coding sequence (CDS)

ATGGAAGGTTCATCTTCCTCTAATCCACATAACAAAGAGAATGAGAAGAAGCGAGTGTTATGGCCTCCACCAACCAAATCAGGTCAAGAACGGGTTAGTGGAGACTCAGAACACGTCACGGAGCCCTTGGAGCACTCAGATTCGACCACGGTCGAAATTCAATGCCAAATTGCGCCTGGTACAATTATGGATGAGACTCCACCGTCCACTCTACAAGAACAGGAAAGGACAACGCTGAAAATTACCAAAATTTTGGTGGCGTTGAATGAAGCAAGGGGAGAAGATCCATTGGAGGATGATGGAAACAGTAAGGCTGCACAAGGACAATTGAATGTTGATGGAGAGGATGAAGATCTCGGAGAACTACCCGAAGAAGTGCATGGAGATGAGTATGAAGACGAAGAAGAAAATGACGATATCTCTCAAAATGAAGTGAGAGTACGAACTCCGGTGCACGAATCTCAGGAAAATGGCGAGGAGCCCCCTGTATAA

Protein sequence

MEGSSSSNPHNKENEKKRVLWPPPTKSGQERVSGDSEHVTEPLEHSDSTTVEIQCQIAPGTIMDETPPSTLQEQERTTLKITKILVALNEARGEDPLEDDGNSKAAQGQLNVDGEDEDLGELPEEVHGDEYEDEEENDDISQNEVRVRTPVHESQENGEEPPV

Homology

[Close]

BLAST of MC05g_new0248 vs. NCBI nr
Match: XP_022158483.1 (uncharacterized protein LOC111024964 [Momordica charantia])

HSP 1 Score: 134 bits (338), Expect = 1.74e-34
Identity = 101/214 (47.20%), Postives = 118/214 (55.14%), Query Frame = 0


Query: 1   MEGSSSSNPHNKENEKKRVLWPPP----------TKSG---------------------- 60
           MEGSS S P +KENEKK+V+ PPP           + G                      
Sbjct: 53  MEGSSFSKPCDKENEKKKVILPPPIPPEPHVARVNEGGYSEKKLEGFSKVYLRKNQSVGD 112

Query: 61  -----QERVSGDSEHV---TEPLEHSDSTTVEIQCQIAP-----------GTIMDETPPS 120
                 ER++  +E V    +  E  D     I  +IA               M E    
Sbjct: 113 KDSDLDERIARINEKVDIENKEREIWDKKNEVICAKIAELNKKWQRFMENSRRMSEEIQI 172

Query: 121 TLQEQERTTLKITKILVALNEARGEDPLEDDGNSKAAQGQLNVDGEDEDLGELPEEVHGD 163
            L EQERTT KITKILVALNEA GEDPLEDDGNS+ AQG+LNVDGEDEDLG+LP+EVHGD
Sbjct: 173 ELNEQERTTSKITKILVALNEATGEDPLEDDGNSREAQGRLNVDGEDEDLGDLPQEVHGD 232

[Close]

BLAST of MC05g_new0248 vs. NCBI nr
Match: XP_022156935.1 (uncharacterized protein LOC111023761 [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 7.51e-21
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 32  VSGDSEHVTEPLEHSDSTTVEIQCQIAPGTIMDETPPSTLQEQERTTLKITKILVALNEA 91
           VSGDSEH  EPLEHSDS TV+I+CQIAP TIM ETPP+TLQE          +LVALNEA
Sbjct: 180 VSGDSEHDMEPLEHSDSATVKIECQIAPSTIMVETPPATLQE----------VLVALNEA 239

Query: 92  RGEDPLEDDGNS 103
           RGEDPL+DDGNS
Sbjct: 240 RGEDPLKDDGNS 241

[Close]

BLAST of MC05g_new0248 vs. NCBI nr
Match: XP_022144472.1 (LOW QUALITY PROTEIN: ATP-dependent helicase NAM7-like [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 6.17e-17
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 73  EQERTTLKITKILVALNEARGEDPLEDDGNSKAAQGQLNVDGEDEDLGELP 123
           EQERTT KI +ILVALNEARGEDPLEDDGN+ AAQGQLNVDGEDEDLGELP
Sbjct: 707 EQERTTPKIDEILVALNEARGEDPLEDDGNNGAAQGQLNVDGEDEDLGELP 757

[Close]

BLAST of MC05g_new0248 vs. NCBI nr
Match: XP_022154847.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 6.78e-15
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 109  QLNVDGEDEDLGELPEEVHGDEYEDEEENDDISQNEVRVRTPVHESQENGEEPP 162
            QLNVD EDED GELP+EVHGDE+EDEE+NDDISQ EV+VRTPVHESQ+  EEPP
Sbjct: 970  QLNVDREDEDFGELPQEVHGDEFEDEEDNDDISQYEVKVRTPVHESQQVDEEPP 1023

[Close]

BLAST of MC05g_new0248 vs. ExPASy TrEMBL
Match: A0A6J1DW79 (uncharacterized protein LOC111024964 OS=Momordica charantia OX=3673 GN=LOC111024964 PE=4 SV=1)

HSP 1 Score: 134 bits (338), Expect = 8.41e-35
Identity = 101/214 (47.20%), Postives = 118/214 (55.14%), Query Frame = 0


Query: 1   MEGSSSSNPHNKENEKKRVLWPPP----------TKSG---------------------- 60
           MEGSS S P +KENEKK+V+ PPP           + G                      
Sbjct: 53  MEGSSFSKPCDKENEKKKVILPPPIPPEPHVARVNEGGYSEKKLEGFSKVYLRKNQSVGD 112

Query: 61  -----QERVSGDSEHV---TEPLEHSDSTTVEIQCQIAP-----------GTIMDETPPS 120
                 ER++  +E V    +  E  D     I  +IA               M E    
Sbjct: 113 KDSDLDERIARINEKVDIENKEREIWDKKNEVICAKIAELNKKWQRFMENSRRMSEEIQI 172

Query: 121 TLQEQERTTLKITKILVALNEARGEDPLEDDGNSKAAQGQLNVDGEDEDLGELPEEVHGD 163
            L EQERTT KITKILVALNEA GEDPLEDDGNS+ AQG+LNVDGEDEDLG+LP+EVHGD
Sbjct: 173 ELNEQERTTSKITKILVALNEATGEDPLEDDGNSREAQGRLNVDGEDEDLGDLPQEVHGD 232

[Close]

BLAST of MC05g_new0248 vs. ExPASy TrEMBL
Match: A0A6J1DRR9 (uncharacterized protein LOC111023761 OS=Momordica charantia OX=3673 GN=LOC111023761 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.64e-21
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 32  VSGDSEHVTEPLEHSDSTTVEIQCQIAPGTIMDETPPSTLQEQERTTLKITKILVALNEA 91
           VSGDSEH  EPLEHSDS TV+I+CQIAP TIM ETPP+TLQE          +LVALNEA
Sbjct: 180 VSGDSEHDMEPLEHSDSATVKIECQIAPSTIMVETPPATLQE----------VLVALNEA 239

Query: 92  RGEDPLEDDGNS 103
           RGEDPL+DDGNS
Sbjct: 240 RGEDPLKDDGNS 241

[Close]

BLAST of MC05g_new0248 vs. ExPASy TrEMBL
Match: A0A6J1CTS8 (LOW QUALITY PROTEIN: ATP-dependent helicase NAM7-like OS=Momordica charantia OX=3673 GN=LOC111014153 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.99e-17
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 73  EQERTTLKITKILVALNEARGEDPLEDDGNSKAAQGQLNVDGEDEDLGELP 123
           EQERTT KI +ILVALNEARGEDPLEDDGN+ AAQGQLNVDGEDEDLGELP
Sbjct: 707 EQERTTPKIDEILVALNEARGEDPLEDDGNNGAAQGQLNVDGEDEDLGELP 757

[Close]

BLAST of MC05g_new0248 vs. ExPASy TrEMBL
Match: A0A6J1DMT3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia OX=3673 GN=LOC111022007 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.28e-15
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 109  QLNVDGEDEDLGELPEEVHGDEYEDEEENDDISQNEVRVRTPVHESQENGEEPP 162
            QLNVD EDED GELP+EVHGDE+EDEE+NDDISQ EV+VRTPVHESQ+  EEPP
Sbjct: 970  QLNVDREDEDFGELPQEVHGDEFEDEEDNDDISQYEVKVRTPVHESQQVDEEPP 1023

The following BLAST results are available for this feature:

BLAST of MC05g_new0248 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g_new0248 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158483.1	1.74e-34	47.20	uncharacterized protein LOC111024964 [Momordica charantia]	[more]
XP_022156935.1	7.51e-21	72.22	uncharacterized protein LOC111023761 [Momordica charantia]	[more]
XP_022144472.1	6.17e-17	90.20	LOW QUALITY PROTEIN: ATP-dependent helicase NAM7-like [Momordica charantia]	[more]
XP_022154847.1	6.78e-15	81.48	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia]	[more]

BLAST of MC05g_new0248 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DW79	8.41e-35	47.20	uncharacterized protein LOC111024964 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DRR9	3.64e-21	72.22	uncharacterized protein LOC111023761 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CTS8	2.99e-17	90.20	LOW QUALITY PROTEIN: ATP-dependent helicase NAM7-like OS=Momordica charantia OX=...	[more]
A0A6J1DMT3	3.28e-15	81.48	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia...	[more]

BLAST of MC05g_new0248 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g_new0248.1	MC05g_new0248.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding