MC05g_new0246 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g_new0246
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC05: 12568644 .. 12570286 (+)
RNA-Seq Expression	MC05g_new0246
Synteny	MC05g_new0246

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCTCATCCTCCTCCAAGCCATGCGACAAAGAGAACGGGAAGACGGTGATACTTCCACCACCTACTCCATCAGGTATGATCCCTCTTCAACCCCCTCAAATCTCTCGTGAAAGATAATTTTTTATTCTAGGGTACAAAGAAAGAAACTAAATGAAGCTTTAAGAATGAACCCTAGAAAGAACCTATCCATAAGTAATGAAAATTCTAAAAAAAATTACTTTAAAAAGGCCATAGTGAAAAAGGATTAGAAGAATTTAGCAACATCTACCTTAGAAAAAATCAATTTGTGGGTGATAAAAGGTTCTGATTTAGAAGAAAGTATTGCTAGGATTAATGAGAGAATTGATATTGACAATAGAAAAGAGAGATTAGGGATAAGGAGAATGAGGTTATTTGTGCCAAGATAGCGGAACTAAATGATAAATGGCAGAAATTTATGGAAAATTCAAGGAGGATGAGTGAAGAAATTCAAATTGAATTAAATGGTATGAATAAATGCTATATGTTGAATTCCCCTCAAAACAATCTCGTTTCCGAATCTTTAGAGTTATCTATCCCTTCCCCTCCTTCCATTACCGTTGCTATGGAAGTAGAAGGTCAAAAACAGGTTACTGGTGATTCTGAGCATGACACAGAACGATTGGAGCACTCAGATTCGGCCACAGTCGAAATCCACTACCAAAATGCGCCTGGCGCAATTTTGGAGAGCACTTCACCGTCTACTCTACAAGGTATTTCGTCTCCCAATTTTCCAGATGTCCCTTTGACTAAAAAGCCATTAGTTTTTTATGATGTAGAATAGGAAAGGGCGACGTCAAAAGTTGCCAAAATTTTCGTGGCTTTGAATGAAGAAACGGGGGAAAATCCATTGGAGGATGATGGAAACAGTGGGGAAGCTCAGAAGAGGCTAAATGATGATGGCAAAGATGAGGATCTTGGAGATTTACCCCAAGAAGTCCATGGACAAATGTAACGCCCCGCGTTACTCAGGTTAGCTTGCCCCGAGTTCCGGAAAATTTTATAACAAAATGGATTTTTATTTATTGTTTCATTGATTTATTTCATTGTTATTTTTTTTCATTGATTCATCAGTGATCTTATTTAATTTAAGTGTGACATCTCGACTGGTGTGTATTGTTACAGTTTTAGTGGTGAGTTAGTAGCGTGTAGTTATTTATCAAGTTACATATAGCACGGAATTCCATTATGCGACACATGTTTTGGATCATTGGGCCAATTACGAAATTCTATTATTGGTTTGTTTTAACAAGGAAGGGTTGGGTAAGTGGGCCTTAAACATAGGGAAAAGAACCCAAGCCCAAAGGAGTTAAAATTTTGAAACAACAAAAGGGAACCCTAGCCACTTGTTCTCCTTTTCCCTTTTTCCTCTCTTGTTGAAGTCGACAGCCCCCTCCCTCAATTTATTCTTCTTTTTCGGTTCAGCCACCTCCACCTTCCTCCTTCTTGTTCTCCGGCGAGACACCGAGCAGCCGCGCCTCCCTCGACCATACCTACAGCAGCTTCACGGCGGTGCGGCGATTTCTGGTGGGGACCCAAGGACGTCGGCGCAGCAGCGAACAGCGGCGCGGCACCTTCCGGCGGAGACCCACGAACAGCAGCGTTCCTTTGAACTCTAG

mRNA sequence

ATGGAAGCCTCATCCTCCTCCAAGCCATGCGACAAAGAGAACGGGAAGACGGTGATACTTCCACCACCTACTCCATCAGAGTTATCTATCCCTTCCCCTCCTTCCATTACCGTTGCTATGGAAGTAGAAGGTCAAAAACAGGTTACTGGTGATTCTGAGCATGACACAGAACGATTGGAGCACTCAGATTCGGCCACAGTCGAAATCCACTACCAAAATGCGCCTGGCGCAATTTTGGAGAGCACTTCACCGTCTACTCTACAAGCCACCTCCACCTTCCTCCTTCTTGTTCTCCGGCGAGACACCGAGCAGCCGCGCCTCCCTCGACCATACCTACAGCAGCTTCACGGCGGTGCGGCGATTTCTGGTGGGGACCCAAGGACGTCGGCGCAGCAGCGAACAGCGGCGCGGCACCTTCCGGCGGAGACCCACGAACAGCAGCGTTCCTTTGAACTCTAG

Coding sequence (CDS)

ATGGAAGCCTCATCCTCCTCCAAGCCATGCGACAAAGAGAACGGGAAGACGGTGATACTTCCACCACCTACTCCATCAGAGTTATCTATCCCTTCCCCTCCTTCCATTACCGTTGCTATGGAAGTAGAAGGTCAAAAACAGGTTACTGGTGATTCTGAGCATGACACAGAACGATTGGAGCACTCAGATTCGGCCACAGTCGAAATCCACTACCAAAATGCGCCTGGCGCAATTTTGGAGAGCACTTCACCGTCTACTCTACAAGCCACCTCCACCTTCCTCCTTCTTGTTCTCCGGCGAGACACCGAGCAGCCGCGCCTCCCTCGACCATACCTACAGCAGCTTCACGGCGGTGCGGCGATTTCTGGTGGGGACCCAAGGACGTCGGCGCAGCAGCGAACAGCGGCGCGGCACCTTCCGGCGGAGACCCACGAACAGCAGCGTTCCTTTGAACTCTAG

Protein sequence

MEASSSSKPCDKENGKTVILPPPTPSELSIPSPPSITVAMEVEGQKQVTGDSEHDTERLEHSDSATVEIHYQNAPGAILESTSPSTLQATSTFLLLVLRRDTEQPRLPRPYLQQLHGGAAISGGDPRTSAQQRTAARHLPAETHEQQRSFEL

Homology

[Close]

BLAST of MC05g_new0246 vs. NCBI nr
Match: XP_022156935.1 (uncharacterized protein LOC111023761 [Momordica charantia])

HSP 1 Score: 53.9 bits (128), Expect = 4.05e-05
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 47  QVTGDSEHDTERLEHSDSATVEIHYQNAPGAILESTSPSTLQ 88
           +V+GDSEHD E LEHSDSATV+I  Q AP  I+  T P+TLQ
Sbjct: 179 EVSGDSEHDMEPLEHSDSATVKIECQIAPSTIMVETPPATLQ 220

[Close]

BLAST of MC05g_new0246 vs. ExPASy TrEMBL
Match: A0A6J1DRR9 (uncharacterized protein LOC111023761 OS=Momordica charantia OX=3673 GN=LOC111023761 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.96e-05
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 47  QVTGDSEHDTERLEHSDSATVEIHYQNAPGAILESTSPSTLQ 88
           +V+GDSEHD E LEHSDSATV+I  Q AP  I+  T P+TLQ
Sbjct: 179 EVSGDSEHDMEPLEHSDSATVKIECQIAPSTIMVETPPATLQ 220

The following BLAST results are available for this feature:

BLAST of MC05g_new0246 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g_new0246 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156935.1	4.05e-05	64.29	uncharacterized protein LOC111023761 [Momordica charantia]	[more]

BLAST of MC05g_new0246 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRR9	1.96e-05	64.29	uncharacterized protein LOC111023761 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of MC05g_new0246 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g_new0246.1	MC05g_new0246.1	mRNA