MC05g_new0229 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC05g_new0229
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionCACTA en-spm transposon protein
LocationMC05: 12145717 .. 12146302 (-)
RNA-Seq ExpressionMC05g_new0229
SyntenyMC05g_new0229
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTATCAATTGCAGAAAGACGAAGAGGGAGGTGACAACTTTTCTGAAATCGATTTGTTCAAGGAGATGAGATATTCTGACACTAAAGGTTGGGTCGAAGGAGCGGAGACAGCTTACGTAAGTTTTACAAATCTTATAACAATTAACTTCAAATTATGCATTGAATTTTATGTGTAAACATTTTGTTCTTTTTAAAATATGTATGCAGCTAGACATGATGCGTGTTAGAGAAGCATCTATGGAAGACGGAGGTGAACCAATACCAGACTCAAAAGTATTGGAGACAGTTCTTGGTTATCGTTCAGGATACGTTAAGGGTGCTGGTTGGGGCCCAAAACCAAAGTCTCCTAGAGGTTCTTCTTCAAGTGTAGCATCAACACAGCGGGAAGAAAAGCTGTCACAAGAAATATGTACTCTAAGAGAAGAATTTCAGGACCGTCTCACGCAGAAAGATAACGAGTTAGATGAGCGTCTCGCAGCCAAAGATTCTGAGATTACGACTCTACGCAGTGAAATGACAGATTTGAGATCAATGGTGCTACAAATTATGAGTCAGTGTAGTGGAGCCAGCTCGTCAAAATAA

mRNA sequence

ATGTGTTATCAATTGCAGAAAGACGAAGAGGGAGGTGACAACTTTTCTGAAATCGATTTGTTCAAGGAGATGAGATATTCTGACACTAAAGGTTGGGTCGAAGGAGCGGAGACAGCTTACCTAGACATGATGCGTGTTAGAGAAGCATCTATGGAAGACGGAGGTGAACCAATACCAGACTCAAAAGTATTGGAGACAGTTCTTGGTTATCGTTCAGGATACGTTAAGGGTGCTGGTTGGGGCCCAAAACCAAAGTCTCCTAGAGGTTCTTCTTCAAGTGTAGCATCAACACAGCGGGAAGAAAAGCTGTCACAAGAAATATGTACTCTAAGAGAAGAATTTCAGGACCGTCTCACGCAGAAAGATAACGAGTTAGATGAGCGTCTCGCAGCCAAAGATTCTGAGATTACGACTCTACGCAGTGAAATGACAGATTTGAGATCAATGGTGCTACAAATTATGAGTCAGTGTAGTGGAGCCAGCTCGTCAAAATAA

Coding sequence (CDS)

ATGTGTTATCAATTGCAGAAAGACGAAGAGGGAGGTGACAACTTTTCTGAAATCGATTTGTTCAAGGAGATGAGATATTCTGACACTAAAGGTTGGGTCGAAGGAGCGGAGACAGCTTACCTAGACATGATGCGTGTTAGAGAAGCATCTATGGAAGACGGAGGTGAACCAATACCAGACTCAAAAGTATTGGAGACAGTTCTTGGTTATCGTTCAGGATACGTTAAGGGTGCTGGTTGGGGCCCAAAACCAAAGTCTCCTAGAGGTTCTTCTTCAAGTGTAGCATCAACACAGCGGGAAGAAAAGCTGTCACAAGAAATATGTACTCTAAGAGAAGAATTTCAGGACCGTCTCACGCAGAAAGATAACGAGTTAGATGAGCGTCTCGCAGCCAAAGATTCTGAGATTACGACTCTACGCAGTGAAATGACAGATTTGAGATCAATGGTGCTACAAATTATGAGTCAGTGTAGTGGAGCCAGCTCGTCAAAATAA

Protein sequence

MCYQLQKDEEGGDNFSEIDLFKEMRYSDTKGWVEGAETAYLDMMRVREASMEDGGEPIPDSKVLETVLGYRSGYVKGAGWGPKPKSPRGSSSSVASTQREEKLSQEICTLREEFQDRLTQKDNELDERLAAKDSEITTLRSEMTDLRSMVLQIMSQCSGASSSK
Homology
BLAST of MC05g_new0229 vs. NCBI nr
Match: KAG9439887.1 (hypothetical protein H6P81_020052 [Aristolochia fimbriata])

HSP 1 Score: 75.5 bits (184), Expect = 4.61e-14
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 0

Query: 12  GDNFSEIDLFKEMRYSDTKGWVEGAETAYLDMMRVREASMEDGGEPIPDSKVLETVLGYR 71
           GDN S I+ FK+   S    W  GAE  Y  M+ V+EA+ E G   + ++K++E++LGYR
Sbjct: 15  GDNKSPINQFKQTHSSKNGTWGFGAEEKYNQMVEVKEAAFEIGY--VDEAKIVESILGYR 74

Query: 72  SGYVKGAGWGPKPKSPRGSSSSVASTQREEKL---SQEICTLRE 112
           SGY+KG G   +P+  RGS SS  +T  EEKL   SQEI +L+E
Sbjct: 75  SGYIKGQGT-TQPRIIRGSQSSSTATHFEEKLCEYSQEIQSLKE 115

BLAST of MC05g_new0229 vs. NCBI nr
Match: TYK21104.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 3.95e-13
Identity = 33/81 (40.74%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 8   DEEGGDNFSEIDLFKEMRYSDTKGWVEGAETAYLDMMRVREASMEDGGEPIPDSKVLETV 67
           ++E G   SEI+LF+    ++  GWV  A+  Y +M+ ++  S ++G EP+ + ++ + V
Sbjct: 52  EKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYDEMVELKTTSSQEGSEPLLEREICDRV 111

Query: 68  LGYRSGYVKGAGWGPKPKSPR 88
           LG RSG+VKG GWGP+PK+ R
Sbjct: 112 LGKRSGHVKGQGWGPRPKNAR 132

BLAST of MC05g_new0229 vs. NCBI nr
Match: KAA0032027.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa] >TYK16848.1 formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 4.11e-13
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 0

Query: 8   DEEGGDNFSEIDLFKEMRYSDTKGWVEGAETAYLDMMRVREASMEDGGEPIPDSKVLETV 67
           ++E G   SEI LF+    +  KGWV   +  Y +M+ +   S ++G EP+ + ++ E V
Sbjct: 52  EKEEGKEVSEIKLFQLTHSNKKKGWVNKPKAKYDEMVELETTSSQEGSEPLLEREICERV 111

Query: 68  LGYRSGYVKGAGWGPKPKSPRGSS 91
           LG RSG+VKG GWGP+PK+ R  S
Sbjct: 112 LGKRSGHVKGQGWGPRPKNARNES 135

BLAST of MC05g_new0229 vs. NCBI nr
Match: KAA0046978.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 4.71e-13
Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 8   DEEGGDNFSEIDLFKEMRYSDTKGWVEGAETAYLDMMRVREASMEDGGEPIPDSKVLETV 67
           ++E G   SEI+LF+    ++  GWV  A+  Y +M+ ++  S ++G EP+ + K+ + V
Sbjct: 154 EKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYDEMVELKTTSSQEGSEPLLERKICDRV 213

Query: 68  LGYRSGYVKGAGWGPKPKSPR 88
           LG RSG+VKG GWGP+PK+ R
Sbjct: 214 LGKRSGHVKGQGWGPRPKNAR 234

BLAST of MC05g_new0229 vs. NCBI nr
Match: TYK04806.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 5.56e-13
Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 8   DEEGGDNFSEIDLFKEMRYSDTKGWVEGAETAYLDMMRVREASMEDGGEPIPDSKVLETV 67
           ++E G   SEI+LF+    ++  GWV  A+  Y +M+ ++  S ++G EP+ + K+ + V
Sbjct: 171 EKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYDEMVELKTTSSQEGSEPLLERKICDRV 230

Query: 68  LGYRSGYVKGAGWGPKPKSPR 88
           LG RSG+VKG GWGP+PK+ R
Sbjct: 231 LGKRSGHVKGQGWGPRPKNAR 251

BLAST of MC05g_new0229 vs. ExPASy TrEMBL
Match: A0A5D3DBZ5 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00730 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.91e-13
Identity = 33/81 (40.74%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 8   DEEGGDNFSEIDLFKEMRYSDTKGWVEGAETAYLDMMRVREASMEDGGEPIPDSKVLETV 67
           ++E G   SEI+LF+    ++  GWV  A+  Y +M+ ++  S ++G EP+ + ++ + V
Sbjct: 52  EKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYDEMVELKTTSSQEGSEPLLEREICDRV 111

Query: 68  LGYRSGYVKGAGWGPKPKSPR 88
           LG RSG+VKG GWGP+PK+ R
Sbjct: 112 LGKRSGHVKGQGWGPRPKNAR 132

BLAST of MC05g_new0229 vs. ExPASy TrEMBL
Match: A0A5D3D027 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001240 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.99e-13
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 0

Query: 8   DEEGGDNFSEIDLFKEMRYSDTKGWVEGAETAYLDMMRVREASMEDGGEPIPDSKVLETV 67
           ++E G   SEI LF+    +  KGWV   +  Y +M+ +   S ++G EP+ + ++ E V
Sbjct: 52  EKEEGKEVSEIKLFQLTHSNKKKGWVNKPKAKYDEMVELETTSSQEGSEPLLEREICERV 111

Query: 68  LGYRSGYVKGAGWGPKPKSPRGSS 91
           LG RSG+VKG GWGP+PK+ R  S
Sbjct: 112 LGKRSGHVKGQGWGPRPKNARNES 135

BLAST of MC05g_new0229 vs. ExPASy TrEMBL
Match: A0A5A7TVR8 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001640 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.28e-13
Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 8   DEEGGDNFSEIDLFKEMRYSDTKGWVEGAETAYLDMMRVREASMEDGGEPIPDSKVLETV 67
           ++E G   SEI+LF+    ++  GWV  A+  Y +M+ ++  S ++G EP+ + K+ + V
Sbjct: 154 EKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYDEMVELKTTSSQEGSEPLLERKICDRV 213

Query: 68  LGYRSGYVKGAGWGPKPKSPR 88
           LG RSG+VKG GWGP+PK+ R
Sbjct: 214 LGKRSGHVKGQGWGPRPKNAR 234

BLAST of MC05g_new0229 vs. ExPASy TrEMBL
Match: A0A5D3C2Z5 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001300 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.69e-13
Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 8   DEEGGDNFSEIDLFKEMRYSDTKGWVEGAETAYLDMMRVREASMEDGGEPIPDSKVLETV 67
           ++E G   SEI+LF+    ++  GWV  A+  Y +M+ ++  S ++G EP+ + K+ + V
Sbjct: 171 EKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYDEMVELKTTSSQEGSEPLLERKICDRV 230

Query: 68  LGYRSGYVKGAGWGPKPKSPR 88
           LG RSG+VKG GWGP+PK+ R
Sbjct: 231 LGKRSGHVKGQGWGPRPKNAR 251

BLAST of MC05g_new0229 vs. ExPASy TrEMBL
Match: A0A5A7T089 (Transposon, En/Spm-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G002870 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.54e-12
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 17  EIDLFKEMRYSDTKGWVEGAETAYLDMMRVREASMEDGGEPIPDSKVLETVLGYRSGYVK 76
           EI+LF+    ++ KGWV  A+  Y +MM ++  S ++G EP+ + ++ E VLG RSG+VK
Sbjct: 801 EIELFQLTHSNEKKGWVNAAKAKYDEMMELKTTSSQEGIEPLLEKEICERVLGKRSGHVK 860

Query: 77  GAGWGPKPKSPR 88
           G GWGP+PK+ R
Sbjct: 861 GQGWGPRPKNAR 872

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG9439887.14.61e-1446.15hypothetical protein H6P81_020052 [Aristolochia fimbriata][more]
TYK21104.13.95e-1340.74formin-like protein 4 isoform X2 [Cucumis melo var. makuwa][more]
KAA0032027.14.11e-1341.67formin-like protein 4 isoform X2 [Cucumis melo var. makuwa] >TYK16848.1 formin-l... [more]
KAA0046978.14.71e-1341.98formin-like protein 4 isoform X2 [Cucumis melo var. makuwa][more]
TYK04806.15.56e-1341.98formin-like protein 4 isoform X2 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5D3DBZ51.91e-1340.74Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5D3D0271.99e-1341.67Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7TVR82.28e-1341.98Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5D3C2Z52.69e-1341.98Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7T0891.54e-1245.83Transposon, En/Spm-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC05g_new0229.1MC05g_new0229.1mRNA