MC05g_new0221 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC05g_new0221
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC05: 11860388 .. 11861791 (-)
RNA-Seq ExpressionMC05g_new0221
SyntenyMC05g_new0221
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAACACGAAAACTAAAACGGGGAGGGGAAGAAGAGGCTCACGATTGGGGAGGGTTGTTGGGGGCTAGGGTTTCCTCTTACCTTCCTTTTGTTTTTAAGGGGCCCACTTGGGCTAGGCCCTTTTCTCCTTCCCTCTTGTTTTAAAACAAGAAAGGCCCACTTACTTAGATACTCAAATTGGGCCCAACGGACCGGAACAATTATAGAGAAAGCAATTTCCTCGTTACACAATAGTTGGATACGTAAGTACACTTTAACACTATAACAATAACCACAGCGGCTCGAAATAAAATGAAATGAACAATGAAATTAAATAAAAAGAAATTTCTAAGAAAAAAGGGTCTGGGGACTCGAGATAACTAACCTGAGTAACGCGGGGTGTTACACTCGGACAGTCTCTGTTTCCCAACTTCTGCCAACGCCAAGCTCCTTCTAAGCATATTATAGTAGTCCCAATGGGCTAGGCGACATTCCAAAAGTTCGTAGATCCGGAAGCAAGGGCGAGCTATCGATCGATCAAGATAAGGCACCTGTACTTAGAGAAAAGGTTTTTGGAGGCGGAGATGCCCCTGTGTGTGAAGGAAAGAGCCGCACGTTTAAAGTGGGAGCATTTCTATGCTCCCCTTATGCTGATTTTGTCGGAGATCGTGAGGGAATTCTACGCCAACTTCGACCATGATAGAGTAGGGCACACTACTGTACGGGAGGTGGAAATCGACTGGATGCCGGAAAGAATCAACAAGCTGCTAAAGCTCCCCAACAACCCAAAGGCTGAATTCAACGTGATGATCCAGCAGCCCTCAATGCGGGAACTTGATCAAGCCTTCAATCTGATAGGCATATAGGGTGCTGCGTGGCAAGTGAAGGACAAGGGGGCGCGCTCGTTGAAATCTGGCCAGCTTATAAGAGAAGCTAACGTTTGGCTCTACTTCGTTAAGAGTCGGGTCATGCCTACCACACATGATTCGTCTGTTACGAAGGACAGAGTCCTTCTGTTAGCTTGCATATTGGAAGGTCGCTCCATCGATGTCGGACAACTAATCCACCGGAAGATCACGCAGTCCGCAACTAAGAAGACCGGCCGTCTGTTTTTCCCCAGCCTTATCACTAAGCTCTGCCTTCGCAGAGAAGTGCCCATCTTGGATGAAGAAGAGCCTCTCGAGGACAAGTTGGTGATCGATCGGACTACGGTGGAACGGCTGATGAGGCAGGACTCCAATCACCGCGGAGCTGTGCAGAATGTGGCCATCAATAAAATGATGGCCCATATAGCCAAGATGCAGAAGCAACTCTCGCAAATGGAGGAAGCGTAGTCCGCGTTCACTGAAAAGGCTAAGAAAAGAGATGCAACTATCCTTGTAGCGCTGGAGCATTTCAAAGCAGCCGCACCTCCTACATCCGCC

mRNA sequence

ATGCCCCTGTGTGTGAAGGAAAGAGCCGCACGTTTAAAGTGGGAGCATTTCTATGCTCCCCTTATGCTGATTTTGTCGGAGATCGTGAGGGAATTCTACGCCAACTTCGACCATGATAGAGTAGGGCACACTACTGTACGGGAGGTGGAAATCGACTGGATGCCGGAAAGAATCAACAAGCTGCTAAAGCTCCCCAACAACCCAAAGGCTGAATTCAACGTGATGATCCAGCAGCCCTCAATGCGGGAACTTGATCAAGCCTTCAATCTGATAGGCATATAG

Coding sequence (CDS)

ATGCCCCTGTGTGTGAAGGAAAGAGCCGCACGTTTAAAGTGGGAGCATTTCTATGCTCCCCTTATGCTGATTTTGTCGGAGATCGTGAGGGAATTCTACGCCAACTTCGACCATGATAGAGTAGGGCACACTACTGTACGGGAGGTGGAAATCGACTGGATGCCGGAAAGAATCAACAAGCTGCTAAAGCTCCCCAACAACCCAAAGGCTGAATTCAACGTGATGATCCAGCAGCCCTCAATGCGGGAACTTGATCAAGCCTTCAATCTGATAGGCATATAG

Protein sequence

MPLCVKERAARLKWEHFYAPLMLILSEIVREFYANFDHDRVGHTTVREVEIDWMPERINKLLKLPNNPKAEFNVMIQQPSMRELDQAFNLIGI
Homology
[Close]
BLAST of MC05g_new0221 vs. NCBI nr
Match: TYG89411.1 (hypothetical protein ES288_A12G098400v1 [Gossypium darwinii])

HSP 1 Score: 48.5 bits (114), Expect = 2.04e-04
Identity = 26/91 (28.57%), Postives = 47/91 (51.65%), Query Frame = 0 

Query: 1   MPLCVKERAARLKWEHFYAPLMLILSEIVREFYANFDHDRVGHTTVREVEIDWMPERINK 60
           +P+ ++++   LKWE F   L+L   E+V+EFYA++         VR+ ++    + IN 
Sbjct: 52  VPIPIRKKINALKWERFCDALLLSDDELVQEFYASWTMQDATEVIVRKKKVPLTFKSIND 111

Query: 61  LLKLPNNPKAEFNVMIQQPSMRELDQAFNLI 91
              LP+  + E+  M+   +   L Q  NL+
Sbjct: 112 FFNLPDVEEDEYYPMMNNINWDFLQQVLNLV 142

[Close]
BLAST of MC05g_new0221 vs. NCBI nr
Match: TYG86424.1 (hypothetical protein ES288_A13G133200v1 [Gossypium darwinii])

HSP 1 Score: 47.0 bits (110), Expect = 7.84e-04
Identity = 26/91 (28.57%), Postives = 45/91 (49.45%), Query Frame = 0 

Query: 1   MPLCVKERAARLKWEHFYAPLMLILSEIVREFYANFDHDRVGHTTVREVEIDWMPERINK 60
           +P+ +++    LKWE F     L+  E+VREFYA+          VR+ ++    + IN 
Sbjct: 52  VPVLIRKVINALKWERFCDARSLLDDELVREFYASLMTQDATEVIVRKKKVPLTSKSIND 111

Query: 61  LLKLPNNPKAEFNVMIQQPSMRELDQAFNLI 91
           L  LPN  + E+  M+   +   L Q  +++
Sbjct: 112 LFNLPNVEEDEYYPMMNNINWDFLQQVLDVV 142

[Close]
BLAST of MC05g_new0221 vs. ExPASy TrEMBL
Match: A0A5D2E8I5 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G098400v1 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.89e-05
Identity = 26/91 (28.57%), Postives = 47/91 (51.65%), Query Frame = 0 

Query: 1   MPLCVKERAARLKWEHFYAPLMLILSEIVREFYANFDHDRVGHTTVREVEIDWMPERINK 60
           +P+ ++++   LKWE F   L+L   E+V+EFYA++         VR+ ++    + IN 
Sbjct: 52  VPIPIRKKINALKWERFCDALLLSDDELVQEFYASWTMQDATEVIVRKKKVPLTFKSIND 111

Query: 61  LLKLPNNPKAEFNVMIQQPSMRELDQAFNLI 91
              LP+  + E+  M+   +   L Q  NL+
Sbjct: 112 FFNLPDVEEDEYYPMMNNINWDFLQQVLNLV 142

[Close]
BLAST of MC05g_new0221 vs. ExPASy TrEMBL
Match: A0A5D2DZ74 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A13G133200v1 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.80e-04
Identity = 26/91 (28.57%), Postives = 45/91 (49.45%), Query Frame = 0 

Query: 1   MPLCVKERAARLKWEHFYAPLMLILSEIVREFYANFDHDRVGHTTVREVEIDWMPERINK 60
           +P+ +++    LKWE F     L+  E+VREFYA+          VR+ ++    + IN 
Sbjct: 52  VPVLIRKVINALKWERFCDARSLLDDELVREFYASLMTQDATEVIVRKKKVPLTSKSIND 111

Query: 61  LLKLPNNPKAEFNVMIQQPSMRELDQAFNLI 91
           L  LPN  + E+  M+   +   L Q  +++
Sbjct: 112 LFNLPNVEEDEYYPMMNNINWDFLQQVLDVV 142

[Close]
BLAST of MC05g_new0221 vs. ExPASy TrEMBL
Match: A0A5J5SFC2 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D02G136900v1 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 6.15e-04
Identity = 24/76 (31.58%), Postives = 41/76 (53.95%), Query Frame = 0 

Query: 1   MPLCVKERAARLKWEHFYAPLMLILSEIVREFYANFDHDRVGHTTVREVEIDWMPERINK 60
           +P+ ++++   LKWE F     L+  E+VREFYA+          VR+ +I    + IN 
Sbjct: 52  VPIPIRKKINALKWERFCDACSLLDDELVREFYASLTMQDAIEVIVRKKKIPLTSKSIND 111

Query: 61  LLKLPNNPKAEFNVMI 76
           L  LP+  + E++ M+
Sbjct: 112 LFNLPDVEEDEYSPMM 127

The following BLAST results are available for this feature:
BLAST of MC05g_new0221 vs.
Match NameE-valueIdentityDescription
BLAST of MC05g_new0221 vs. NCBI nr
Match NameE-valueIdentityDescription
TYG89411.12.04e-0428.57hypothetical protein ES288_A12G098400v1 [Gossypium darwinii][more]
TYG86424.17.84e-0428.57hypothetical protein ES288_A13G133200v1 [Gossypium darwinii][more]
BLAST of MC05g_new0221 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D2E8I59.89e-0528.57Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G098400v1 PE=... [more]
A0A5D2DZ743.80e-0428.57Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A13G133200v1 PE=... [more]
A0A5J5SFC26.15e-0431.58Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D02G136900v1 PE... [more]
BLAST of MC05g_new0221 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC05g_new0221.1MC05g_new0221.1mRNA