MC05g_new0218 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g_new0218
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC05: 11724215 .. 11724742 (+)
RNA-Seq Expression	MC05g_new0218
Synteny	MC05g_new0218

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTTCATCTTCCTCCAAGCCGCACGACAAAGAGAAGGAAAAGAAGGGAGTGTTGTTGCCTCCACCAACTAAACCGGGTATGATTCCTCTTGAACCTCCTAGGATTTCTCATGAAAAATTAGTATTTGATCCTAGGGAACAAAGAAGAAAATATAAGGAAGCTATAAGAATGAACCCTAGGAGAAATTTATCCATAGGTAATACAAATTTTGAAAAAATCAATATGGAATCTCATGATGCTAGGGTTAATAAAGAAGGTTCTAGTGAGAAGAAATTAGGAGGTGTTAGTAAAGTCTATCTTCGAAAAAATCAGTCTTTAGAGGAAAAAGGTGTTGTTTTAGACGAAGAAATAGCTAGACTTCAAGAGAGAGCGGAGATGTTCAGGAAAAATAACGAAATTAGGGATAAAGAGAATGAGAAGGTCTATGCGAAAATTGAGGAACTAAACATAAAATGGCAAGAATTCATGGAAAACTCAAAGAAAGTGAGTGAGGAGATTCAACATAAAATGAGTGCCATTTGA

mRNA sequence

ATGGAAGGTTCATCTTCCTCCAAGCCGCACGACAAAGAGAAGGAAAAGAAGGGAGTGTTGTTGCCTCCACCAACTAAACCGGGTATGATTCCTCTTGAACCTCCTAGGATTTCTCATGAAAAATTAGTATTTGATCCTAGGGAACAAAGAAGAAAATATAAGGAAGCTATAAGAATGAACCCTAGGAGAAATTTATCCATAGGTAATACAAATTTTGAAAAAATCAATATGGAATCTCATGATGCTAGGGTTAATAAAGAAGGTTCTAGTGAGAAGAAATTAGGAGGTGTTAGTAAAGTCTATCTTCGAAAAAATCAGTCTTTAGAGGAAAAAGGTGTTGTTTTAGACGAAGAAATAGCTAGACTTCAAGAGAGAGCGGAGATGTTCAGGAAAAATAACGAAATTAGGGATAAAGAGAATGAGAAGGTCTATGCGAAAATTGAGGAACTAAACATAAAATGGCAAGAATTCATGGAAAACTCAAAGAAAGTGAGTGAGGAGATTCAACATAAAATGAGTGCCATTTGA

Coding sequence (CDS)

ATGGAAGGTTCATCTTCCTCCAAGCCGCACGACAAAGAGAAGGAAAAGAAGGGAGTGTTGTTGCCTCCACCAACTAAACCGGGTATGATTCCTCTTGAACCTCCTAGGATTTCTCATGAAAAATTAGTATTTGATCCTAGGGAACAAAGAAGAAAATATAAGGAAGCTATAAGAATGAACCCTAGGAGAAATTTATCCATAGGTAATACAAATTTTGAAAAAATCAATATGGAATCTCATGATGCTAGGGTTAATAAAGAAGGTTCTAGTGAGAAGAAATTAGGAGGTGTTAGTAAAGTCTATCTTCGAAAAAATCAGTCTTTAGAGGAAAAAGGTGTTGTTTTAGACGAAGAAATAGCTAGACTTCAAGAGAGAGCGGAGATGTTCAGGAAAAATAACGAAATTAGGGATAAAGAGAATGAGAAGGTCTATGCGAAAATTGAGGAACTAAACATAAAATGGCAAGAATTCATGGAAAACTCAAAGAAAGTGAGTGAGGAGATTCAACATAAAATGAGTGCCATTTGA

Protein sequence

MEGSSSSKPHDKEKEKKGVLLPPPTKPGMIPLEPPRISHEKLVFDPREQRRKYKEAIRMNPRRNLSIGNTNFEKINMESHDARVNKEGSSEKKLGGVSKVYLRKNQSLEEKGVVLDEEIARLQERAEMFRKNNEIRDKENEKVYAKIEELNIKWQEFMENSKKVSEEIQHKMSAI

Homology

[Close]

BLAST of MC05g_new0218 vs. NCBI nr
Match: XP_022158483.1 (uncharacterized protein LOC111024964 [Momordica charantia])

HSP 1 Score: 110 bits (274), Expect = 5.25e-25
Identity = 79/169 (46.75%), Postives = 92/169 (54.44%), Query Frame = 0


Query: 1   MEGSSSSKPHDKEKEKKGVLLPPPTKPGMIPLEPPRISHEKLVFDPREQRRKYKEAIRMN 60
           MEGSS SKP DKE EKK V+LPPP     IP EP                          
Sbjct: 53  MEGSSFSKPCDKENEKKKVILPPP-----IPPEP-------------------------- 112

Query: 61  PRRNLSIGNTNFEKINMESHDARVNKEGSSEKKLGGVSKVYLRKNQSLEEKGVVLDEEIA 120
                              H ARVN+ G SEKKL G SKVYLRKNQS+ +K   LDE IA
Sbjct: 113 -------------------HVARVNEGGYSEKKLEGFSKVYLRKNQSVGDKDSDLDERIA 171

Query: 121 RLQERAEMFRKNNEIRDKENEKVYAKIEELNIKWQEFMENSKKVSEEIQ 169
           R+ E+ ++  K  EI DK+NE + AKI ELN KWQ FMENS+++SEEIQ
Sbjct: 173 RINEKVDIENKEREIWDKKNEVICAKIAELNKKWQRFMENSRRMSEEIQ 171

[Close]

BLAST of MC05g_new0218 vs. NCBI nr
Match: XP_022141932.1 (uncharacterized protein LOC111012188 [Momordica charantia])

HSP 1 Score: 91.7 bits (226), Expect = 3.08e-19
Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 0


Query: 75  INMESHDARVNKEGSSEKKLGGVSKVYLRKNQSLEEKGVVLDEEIARLQERAEMFRKNNE 134
           + +E H AR+N+   +EKKL   SKVYLRKNQ + + G  LDE I  + ER +   K  E
Sbjct: 1   MTLEPHIARINEGDHTEKKLEEFSKVYLRKNQPMGDTGSDLDERIGMINERVDTKNKKME 60

Query: 135 IRDKENEKVYAKIEELNIKWQEFMENSKKVSEEIQ 169
           IRDKENE + AKI ELN KWQ FMENS+++SEEIQ
Sbjct: 61  IRDKENEVICAKIAELNEKWQRFMENSRRMSEEIQ 95

[Close]

BLAST of MC05g_new0218 vs. ExPASy TrEMBL
Match: A0A6J1DW79 (uncharacterized protein LOC111024964 OS=Momordica charantia OX=3673 GN=LOC111024964 PE=4 SV=1)

HSP 1 Score: 110 bits (274), Expect = 2.54e-25
Identity = 79/169 (46.75%), Postives = 92/169 (54.44%), Query Frame = 0


Query: 1   MEGSSSSKPHDKEKEKKGVLLPPPTKPGMIPLEPPRISHEKLVFDPREQRRKYKEAIRMN 60
           MEGSS SKP DKE EKK V+LPPP     IP EP                          
Sbjct: 53  MEGSSFSKPCDKENEKKKVILPPP-----IPPEP-------------------------- 112

Query: 61  PRRNLSIGNTNFEKINMESHDARVNKEGSSEKKLGGVSKVYLRKNQSLEEKGVVLDEEIA 120
                              H ARVN+ G SEKKL G SKVYLRKNQS+ +K   LDE IA
Sbjct: 113 -------------------HVARVNEGGYSEKKLEGFSKVYLRKNQSVGDKDSDLDERIA 171

Query: 121 RLQERAEMFRKNNEIRDKENEKVYAKIEELNIKWQEFMENSKKVSEEIQ 169
           R+ E+ ++  K  EI DK+NE + AKI ELN KWQ FMENS+++SEEIQ
Sbjct: 173 RINEKVDIENKEREIWDKKNEVICAKIAELNKKWQRFMENSRRMSEEIQ 171

[Close]

BLAST of MC05g_new0218 vs. ExPASy TrEMBL
Match: A0A6J1CL76 (uncharacterized protein LOC111012188 OS=Momordica charantia OX=3673 GN=LOC111012188 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.49e-19
Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 0


Query: 75  INMESHDARVNKEGSSEKKLGGVSKVYLRKNQSLEEKGVVLDEEIARLQERAEMFRKNNE 134
           + +E H AR+N+   +EKKL   SKVYLRKNQ + + G  LDE I  + ER +   K  E
Sbjct: 1   MTLEPHIARINEGDHTEKKLEEFSKVYLRKNQPMGDTGSDLDERIGMINERVDTKNKKME 60

Query: 135 IRDKENEKVYAKIEELNIKWQEFMENSKKVSEEIQ 169
           IRDKENE + AKI ELN KWQ FMENS+++SEEIQ
Sbjct: 61  IRDKENEVICAKIAELNEKWQRFMENSRRMSEEIQ 95

The following BLAST results are available for this feature:

BLAST of MC05g_new0218 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g_new0218 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158483.1	5.25e-25	46.75	uncharacterized protein LOC111024964 [Momordica charantia]	[more]
XP_022141932.1	3.08e-19	55.79	uncharacterized protein LOC111012188 [Momordica charantia]	[more]

BLAST of MC05g_new0218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DW79	2.54e-25	46.75	uncharacterized protein LOC111024964 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1CL76	1.49e-19	55.79	uncharacterized protein LOC111012188 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]

BLAST of MC05g_new0218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 105..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g_new0218.1	MC05g_new0218.1	mRNA