MC05g_new0111 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g_new0111
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DUF1681 domain-containing protein
Location	MC05: 6634831 .. 6636562 (+)
RNA-Seq Expression	MC05g_new0111
Synteny	MC05g_new0111

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAACTCCGGCGACCTCTTCGCTGCTTGCTTTGTTCCTGGTCAGCGGGACAACTCTGTCGAGATAGTGCTCGACTCTTCTCGAGGAGAGACGGTGGCGCCGATATCAACGAAGAGAGCCACATTGATATTCATCCTGATCCTGCTGTGAATCACAGACTGAAGGTATTGCCAAGATTTTATTCTCATCTCATCAATGACTGAAGCTGATTAATTTGGTGGTACAGTTGTCTTGTTGAGCTACAATGTCTCGATGCTTTGCCTGAAATCTGATGGCTTTTTTACTATTAACTGATATTATGATTAGTGGAATGAAATCTCTGATCTAGCTATTAGGAACAAAATCATTCACGTAGAATTGTATAGAATAGTCACAATGGTTTTTTTGTAGGTTTTAGAAGTTACTCGCCATGTGTAGGTCTTCAATATTTTGGTGATCAAACCTTGTTTTCGAGTTAGCACCATGAGTTCACTTAATATTTGTAAAATCGTTTGAATTAATGTGAATCACAGCCATCAAGGGGAACTGGTATGCTATCTGCTACTGGGTTGTCAGGGTCTGGAACTGGAAAGCCAAAATCTTGAACTTCCAAAAGTTGGCAAGGATTTCGAGTCTCTTGGCCATGTTGGCTTGAAGGTTCAAGTTCGAACCATCTAGTGAACTTAATACTAAAAACCCTTGACGTCTTCCGGTCAGGGCCTTGGGGCAGCCATGGGTACCCTGGGTACAGGGAGAAAAGCTCCGATTCCTAGTTATTAAAAAAAAAAAAAGAACTTTTGAGTCTTTGCTCCACCAAAATCAGGTCTCCTCTTCCACCCCTCCAAATGATCCGGCCGCTCGGAAGCTATCTGCCAGTGCATGCTGTGATGTTGGTCATGAGGTACAGAAAGACAATGTAAGGCATGCAACCGATCCATTATCATCAGATCTTTCCCAACTTGAGGTACAGTTTCTACTATTAGTTGTTCTTTTCTTTATACCTCTACATAGAGAGAAACATGCTGGATTAGGATAATGGGATTCTTAATTGACTATAAATTTTCCCTTTAACTTACATATATGATATATGGTTCCTCTGTCCTTTCTGCACAACCCATTTGAATCTAGATTACTTATATGAAACACAATTACCAAGTTCGATTCGATTAGACTCGAGGACTGTTTTCTCTCCTTTGTGATGGGTATTGACAACTATCTTAGACTTTACTGTTTAAGCTTGTCCTTTTAATTCCTTTGCCAACTTCAAGACTTGTGCCTGGTGTAATGAATGTATTGAGTTATTTCTAATGCTCAAGCAATCGGCTTAGAATTTATATATTTCTTGAATGTAAATCTGACTGATCCAGATTCATTGGGTTCTCTTAGAACACAGGTAGCTTGCATCCGTGTGTCCCGACTAGCTTGCGTGCACCTCGACTAATCACGGGTCAATGCCTTACCTTACTACATTTGGTCGACAAGAAAACTCGTAGGATATTAAATCCGAGGTTGATGGCCACCATGGTTTAAACTCATTCATCTAAACCCGTTGCTATTCATATTGGTCCTTATTGACCACTAGGTCATCCCATGATGGTTTGTATTGTAGTATTAGTATGACTCTTTGGGAACTCCTGTCAATAAACATGTCAAGAACAATTCTAACACTAGTTTCATTAAATATGCAGAGAAATCTTCCTTCTGCTCCAGCTTCGGCAAAGGCATCGGCGTCAGGATGGGCACCATTCTGA

mRNA sequence

ATGCCAACTCCGGCGACCTCTTCGCTGCTTGCTTTGTTCCTGGGTCTGGAACTGGAAAGCCAAAATCTTGAACTTCCAAAAGTTGGCAAGGATTTCGAGTCTCTTGGCCATGTTGGCTTGAAGGTCTCCTCTTCCACCCCTCCAAATGATCCGGCCGCTCGGAAGCTATCTGCCAGTGCATGCTGTGATGTTGGTCATGAGGTACAGAAAGACAATGTAAGGCATGCAACCGATCCATTATCATCAGATCTTTCCCAACTTGAGAGAAATCTTCCTTCTGCTCCAGCTTCGGCAAAGGCATCGGCGTCAGGATGGGCACCATTCTGA

Coding sequence (CDS)

ATGCCAACTCCGGCGACCTCTTCGCTGCTTGCTTTGTTCCTGGGTCTGGAACTGGAAAGCCAAAATCTTGAACTTCCAAAAGTTGGCAAGGATTTCGAGTCTCTTGGCCATGTTGGCTTGAAGGTCTCCTCTTCCACCCCTCCAAATGATCCGGCCGCTCGGAAGCTATCTGCCAGTGCATGCTGTGATGTTGGTCATGAGGTACAGAAAGACAATGTAAGGCATGCAACCGATCCATTATCATCAGATCTTTCCCAACTTGAGAGAAATCTTCCTTCTGCTCCAGCTTCGGCAAAGGCATCGGCGTCAGGATGGGCACCATTCTGA

Protein sequence

MPTPATSSLLALFLGLELESQNLELPKVGKDFESLGHVGLKVSSSTPPNDPAARKLSASACCDVGHEVQKDNVRHATDPLSSDLSQLERNLPSAPASAKASASGWAPF

Homology

[Close]

BLAST of MC05g_new0111 vs. NCBI nr
Match: XP_022155597.1 (uncharacterized protein At1g03900 [Momordica charantia])

HSP 1 Score: 110 bits (275), Expect = 6.53e-27
Identity = 57/62 (91.94%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 47  PPNDPAARKLSASACCDVGHEVQKDNVRHATDPLSSDLSQLERNLPSAPASAKASASGWA 106
           PPNDPAARKLSASAC DVGHEVQKDNVRHATDPLS DLSQLERNLPSAP SAK SASGWA
Sbjct: 221 PPNDPAARKLSASACRDVGHEVQKDNVRHATDPLS-DLSQLERNLPSAPGSAKTSASGWA 280

Query: 107 PF 108
            F
Sbjct: 281 AF 281

[Close]

BLAST of MC05g_new0111 vs. NCBI nr
Match: XP_022996152.1 (uncharacterized protein At1g03900-like [Cucurbita maxima] >XP_022996154.1 uncharacterized protein At1g03900-like [Cucurbita maxima] >XP_022996155.1 uncharacterized protein At1g03900-like [Cucurbita maxima])

HSP 1 Score: 103 bits (256), Expect = 4.16e-24
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 36  GHVGLKVSSSTPPNDPAARKLSASACCDVGHEVQKDNVRHATDPLSSDLSQLERNLPSAP 95
           G V ++     PPNDPAARKLSASAC DVGHE +KDNVRHA DPLS DLSQLE+NLPSAP
Sbjct: 209 GAVKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLS-DLSQLEKNLPSAP 268

Query: 96  ASAKASASGWAPF 108
            S KA+ASGWA F
Sbjct: 269 GSTKAAASGWAAF 280

[Close]

BLAST of MC05g_new0111 vs. NCBI nr
Match: XP_022931167.1 (uncharacterized protein At1g03900-like [Cucurbita moschata] >XP_022931168.1 uncharacterized protein At1g03900-like [Cucurbita moschata] >XP_022931169.1 uncharacterized protein At1g03900-like [Cucurbita moschata] >KAG6606367.1 hypothetical protein SDJN03_03684, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103 bits (256), Expect = 4.16e-24
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 36  GHVGLKVSSSTPPNDPAARKLSASACCDVGHEVQKDNVRHATDPLSSDLSQLERNLPSAP 95
           G V ++     PPNDPAARKLSASAC DVGHE +KDNVRHA DPLS DLSQLE+NLPSAP
Sbjct: 209 GAVKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLS-DLSQLEKNLPSAP 268

Query: 96  ASAKASASGWAPF 108
            S KA+ASGWA F
Sbjct: 269 GSTKAAASGWAAF 280

[Close]

BLAST of MC05g_new0111 vs. NCBI nr
Match: XP_023533905.1 (uncharacterized protein At1g03900-like [Cucurbita pepo subsp. pepo] >XP_023533906.1 uncharacterized protein At1g03900-like [Cucurbita pepo subsp. pepo] >XP_023533907.1 uncharacterized protein At1g03900-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100 bits (250), Expect = 3.19e-23
Identity = 53/73 (72.60%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 36  GHVGLKVSSSTPPNDPAARKLSASACCDVGHEVQKDNVRHATDPLSSDLSQLERNLPSAP 95
           G V ++     PPNDPAARKLSASAC DVGHE +KDNVRHA DPLS DLSQLE+ LPSAP
Sbjct: 209 GAVKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLS-DLSQLEKTLPSAP 268

Query: 96  ASAKASASGWAPF 108
            S KA+ASGWA F
Sbjct: 269 GSTKAAASGWAAF 280

[Close]

BLAST of MC05g_new0111 vs. NCBI nr
Match: XP_038889027.1 (uncharacterized protein At1g03900 isoform X1 [Benincasa hispida])

HSP 1 Score: 95.5 bits (236), Expect = 3.92e-21
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 47  PPNDPAARKLSASACCDVGHEVQKDNVRHATDPLSSDLSQLERNLPSAPASAKASASGWA 106
           PPNDPA RKLSAS C DVGHE +KDNV +A+DPLS DLSQLERNLPSAP S KA+ASGWA
Sbjct: 224 PPNDPAVRKLSASTCRDVGHEGKKDNVSNASDPLS-DLSQLERNLPSAPGSTKAAASGWA 283

Query: 107 PF 108
            F
Sbjct: 284 AF 284

[Close]

BLAST of MC05g_new0111 vs. ExPASy TrEMBL
Match: A0A6J1DPS7 (uncharacterized protein At1g03900 OS=Momordica charantia OX=3673 GN=LOC111022692 PE=4 SV=1)

HSP 1 Score: 110 bits (275), Expect = 3.16e-27
Identity = 57/62 (91.94%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 47  PPNDPAARKLSASACCDVGHEVQKDNVRHATDPLSSDLSQLERNLPSAPASAKASASGWA 106
           PPNDPAARKLSASAC DVGHEVQKDNVRHATDPLS DLSQLERNLPSAP SAK SASGWA
Sbjct: 221 PPNDPAARKLSASACRDVGHEVQKDNVRHATDPLS-DLSQLERNLPSAPGSAKTSASGWA 280

Query: 107 PF 108
            F
Sbjct: 281 AF 281

[Close]

BLAST of MC05g_new0111 vs. ExPASy TrEMBL
Match: A0A6J1K5Y6 (uncharacterized protein At1g03900-like OS=Cucurbita maxima OX=3661 GN=LOC111491465 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 2.01e-24
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 36  GHVGLKVSSSTPPNDPAARKLSASACCDVGHEVQKDNVRHATDPLSSDLSQLERNLPSAP 95
           G V ++     PPNDPAARKLSASAC DVGHE +KDNVRHA DPLS DLSQLE+NLPSAP
Sbjct: 209 GAVKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLS-DLSQLEKNLPSAP 268

Query: 96  ASAKASASGWAPF 108
            S KA+ASGWA F
Sbjct: 269 GSTKAAASGWAAF 280

[Close]

BLAST of MC05g_new0111 vs. ExPASy TrEMBL
Match: A0A6J1EXN4 (uncharacterized protein At1g03900-like OS=Cucurbita moschata OX=3662 GN=LOC111437427 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 2.01e-24
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 36  GHVGLKVSSSTPPNDPAARKLSASACCDVGHEVQKDNVRHATDPLSSDLSQLERNLPSAP 95
           G V ++     PPNDPAARKLSASAC DVGHE +KDNVRHA DPLS DLSQLE+NLPSAP
Sbjct: 209 GAVKIRSPLPPPPNDPAARKLSASACRDVGHEGKKDNVRHAADPLS-DLSQLEKNLPSAP 268

Query: 96  ASAKASASGWAPF 108
            S KA+ASGWA F
Sbjct: 269 GSTKAAASGWAAF 280

[Close]

BLAST of MC05g_new0111 vs. ExPASy TrEMBL
Match: A0A1S3BHE2 (uncharacterized protein At1g03900 OS=Cucumis melo OX=3656 GN=LOC103489862 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.08e-20
Identity = 49/62 (79.03%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 47  PPNDPAARKLSASACCDVGHEVQKDNVRHATDPLSSDLSQLERNLPSAPASAKASASGWA 106
           PPNDPAARKLSAS C  V HE +KDNV +ATDPLS DLSQLERNLPSAP S KA+ASGWA
Sbjct: 227 PPNDPAARKLSASTCRGVSHEGKKDNVSNATDPLS-DLSQLERNLPSAPGSTKAAASGWA 286

Query: 107 PF 108
            F
Sbjct: 287 AF 287

[Close]

BLAST of MC05g_new0111 vs. ExPASy TrEMBL
Match: A0A6J1HUU0 (uncharacterized protein At1g03900-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467022 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.89e-20
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 41  KVSSSTPP--NDPAARKLSASACCDVGHEVQKDNVRHATDPLSSDLSQLERNLPSAPASA 100
           K+SS  PP  NDPAARKLSASAC DVG E ++DNV +A+DPLS DLSQLERNLPSAP+S 
Sbjct: 212 KISSPLPPPPNDPAARKLSASACRDVGREGKRDNVSNASDPLS-DLSQLERNLPSAPSST 271

Query: 101 KASASGWAPF 108
            A+ASGWA F
Sbjct: 272 TAAASGWAAF 280

[Close]

BLAST of MC05g_new0111 vs. TAIR 10
Match: AT1G03900.1 (non-intrinsic ABC protein 4 )

HSP 1 Score: 42.0 bits (97), Expect = 3.6e-04
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 47  PPNDPAARKLSASACCDVGHEVQKDNVRHATDPLSSDLSQLERNLPSAPASAKA----SA 106
           PPNDP A ++++  C        K++ R+  +PL SDLSQL++NLPS   S  +    +A
Sbjct: 218 PPNDPVASRIASDGC--------KESRRN--EPL-SDLSQLKKNLPSTAGSGSSKSTGAA 272

Query: 107 SGWAPF 109
           SGWA F
Sbjct: 278 SGWAAF 272

The following BLAST results are available for this feature:

BLAST of MC05g_new0111 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g_new0111 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155597.1	6.53e-27	91.94	uncharacterized protein At1g03900 [Momordica charantia]	[more]
XP_022996152.1	4.16e-24	73.97	uncharacterized protein At1g03900-like [Cucurbita maxima] >XP_022996154.1 unchar...	[more]
XP_022931167.1	4.16e-24	73.97	uncharacterized protein At1g03900-like [Cucurbita moschata] >XP_022931168.1 unch...	[more]
XP_023533905.1	3.19e-23	72.60	uncharacterized protein At1g03900-like [Cucurbita pepo subsp. pepo] >XP_02353390...	[more]
XP_038889027.1	3.92e-21	79.03	uncharacterized protein At1g03900 isoform X1 [Benincasa hispida]	[more]

BLAST of MC05g_new0111 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPS7	3.16e-27	91.94	uncharacterized protein At1g03900 OS=Momordica charantia OX=3673 GN=LOC111022692...	[more]
A0A6J1K5Y6	2.01e-24	73.97	uncharacterized protein At1g03900-like OS=Cucurbita maxima OX=3661 GN=LOC1114914...	[more]
A0A6J1EXN4	2.01e-24	73.97	uncharacterized protein At1g03900-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A1S3BHE2	1.08e-20	79.03	uncharacterized protein At1g03900 OS=Cucumis melo OX=3656 GN=LOC103489862 PE=4 S...	[more]
A0A6J1HUU0	1.89e-20	72.86	uncharacterized protein At1g03900-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of MC05g_new0111 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03900.1	3.6e-04	42.42	non-intrinsic ABC protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g_new0111.1	MC05g_new0111.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006897	endocytosis
cellular_component	GO:0030125	clathrin vesicle coat