MC05g_new0108 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g_new0108
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC05: 6463973 .. 6464269 (-)
RNA-Seq Expression	MC05g_new0108
Synteny	MC05g_new0108

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCTCCGACGGATTACTTTGCTTGTTTTGGAGAAGATGTAGTTGAAAAGAACAGCTTAGAGAAACAGGGGCCACAAGCTCCGATGGAGGTCAATGAGGAGGTAGGGGACAGAGAGGTAGTAGGAGTTTCGGAGGAGGGTGATGAGAATTGCTTCCCTTTTTCCCGAAAAATGGTGGTCGCCATGAGGAAGCATAACATGTGTATCAAACCAATATCTTACAAAACTACCTTTAAAGGTAGCACGGCGAAAAAAAGGGAGGCCCGTGAGATCGTGGGGAAGTGGGGAAGTTAA

mRNA sequence

ATGGATCCTCCGACGGATTACTTTGCTTGTTTTGGAGAAGATGTAGTTGAAAAGAACAGCTTAGAGAAACAGGGGCCACAAGCTCCGATGGAGGTCAATGAGGAGGTAGGGGACAGAGAGGTAGTAGGAGTTTCGGAGGAGGGTGATGAGAATTGCTTCCCTTTTTCCCGAAAAATGGTGGTCGCCATGAGGAAGCATAACATGTGTATCAAACCAATATCTTACAAAACTACCTTTAAAGGTAGCACGGCGAAAAAAAGGGAGGCCCGTGAGATCGTGGGGAAGTGGGGAAGTTAA

Coding sequence (CDS)

ATGGATCCTCCGACGGATTACTTTGCTTGTTTTGGAGAAGATGTAGTTGAAAAGAACAGCTTAGAGAAACAGGGGCCACAAGCTCCGATGGAGGTCAATGAGGAGGTAGGGGACAGAGAGGTAGTAGGAGTTTCGGAGGAGGGTGATGAGAATTGCTTCCCTTTTTCCCGAAAAATGGTGGTCGCCATGAGGAAGCATAACATGTGTATCAAACCAATATCTTACAAAACTACCTTTAAAGGTAGCACGGCGAAAAAAAGGGAGGCCCGTGAGATCGTGGGGAAGTGGGGAAGTTAA

Protein sequence

MDPPTDYFACFGEDVVEKNSLEKQGPQAPMEVNEEVGDREVVGVSEEGDENCFPFSRKMVVAMRKHNMCIKPISYKTTFKGSTAKKREAREIVGKWGS

Homology

[Close]

BLAST of MC05g_new0108 vs. NCBI nr
Match: XP_022155953.1 (uncharacterized protein LOC111022947 [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 7.62e-09
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 1   MDPPTDYFACFGEDVVEKNSLEKQGPQAPMEVNEEVGDREVVGVSEEGDENCFPFSRKMV 60
           +DP  DYF  F E+  E   +E +   A     E+  D+E    SE  +   FPF+RKMV
Sbjct: 171 LDPSDDYFVRF-EEREETVEVESEVSVAEEFQREDEDDQE----SEIDEAVHFPFTRKMV 230

Query: 61  VAMRKHNMCIKPISYKTTFKGSTAKKREAREIV 93
            A+R  NMC++PIS K   KG++AKK+EARE++
Sbjct: 231 KALRVFNMCLRPISSKAAMKGTSAKKKEAREMM 258

[Close]

BLAST of MC05g_new0108 vs. ExPASy TrEMBL
Match: A0A6J1DPA4 (uncharacterized protein LOC111022947 OS=Momordica charantia OX=3673 GN=LOC111022947 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.69e-09
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 1   MDPPTDYFACFGEDVVEKNSLEKQGPQAPMEVNEEVGDREVVGVSEEGDENCFPFSRKMV 60
           +DP  DYF  F E+  E   +E +   A     E+  D+E    SE  +   FPF+RKMV
Sbjct: 171 LDPSDDYFVRF-EEREETVEVESEVSVAEEFQREDEDDQE----SEIDEAVHFPFTRKMV 230

Query: 61  VAMRKHNMCIKPISYKTTFKGSTAKKREAREIV 93
            A+R  NMC++PIS K   KG++AKK+EARE++
Sbjct: 231 KALRVFNMCLRPISSKAAMKGTSAKKKEAREMM 258

The following BLAST results are available for this feature:

BLAST of MC05g_new0108 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g_new0108 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155953.1	7.62e-09	43.01	uncharacterized protein LOC111022947 [Momordica charantia]	[more]

BLAST of MC05g_new0108 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPA4	3.69e-09	43.01	uncharacterized protein LOC111022947 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of MC05g_new0108 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g_new0108.1	MC05g_new0108.1	mRNA