MC05g_new0092 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC05g_new0092
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC05: 5211243 .. 5212230 (-)
RNA-Seq ExpressionMC05g_new0092
SyntenyMC05g_new0092
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAAAAAAACAATCCCTTTTTTCCTAACCATCCCATTTTTTTTCGTTATTATCACCACTTCTTCACCTCTCTCTCGATCTCGCTCTCTCCTTCTCGATCCCGTCTTTCTCGGTCTCGCTCTGTCCTTTTCGATCTCACTCTATCGATGACGTCGCTCTGTCCTTCTCGTTCTCGCTTTGTCCCTCTCTCTCCTCTCTCCTCTCCCCTCGACGCATTTGGTTTCATGGAGAAGAAGATAGTCCGGGACGTGCAAGAGATATAGAAGGAAAGTTTTTGAAATCTTGAAAATTTGATTTTAGAAGTGAGGGTGAAAGAGTTGAGAAAAATAATAAGGAAATTTTTATCTTATTTCATATGCAAATTATTCTCTCCCTCTTTCTCGCCGCCGGCAATGTTGTCATCATTCAACAATGTCGCCGAAGAGGCCACCAGTGTCGCCGGAGAGGCCACCAAGGAGGCGCAAGAGCTCGAGATGGAAGCAACGGACGGCAACCGAACAGGACCTCCACTCGTTGAATTCCTAACGGAGACGCCAAAAACTGGTGTGTGTTGTGTAGAAATCATGGAGAAGATCAAGCAAATCTAAAAAATGGAGGAGAGAGGAGGAGAGGGAGAAGAGAGATGGAGTCTGAAGGAGAAAAAAAAAGTAAAGAGGGACATGAAATATCATACTTGTGTTTTGAAGAGGACGATTAGAAAACTTAAAAGGTACCTACAGAACGTTTATTTTGTCAATTTTCCCTTTTTTTAAACATATTTATTAATTCTTTTACTCTTTCTTAAAAAAAAACCTTTTAATTTTTCATTTCTTTTTTTTCTTTCCTTTTTGGTTCACGTTTTGTGTGCCCAGCTTGATTTTTGGACCGCTGATTTTTTTTTTCTTAATACAATTCCCATTCTCCCCGACACTTTTATGATTGTTGTTTGTACTAGAGAAATTTCTCAATGCCTCATGTCAGGAAAAAAAACAAATAAATAAATGCATG

mRNA sequence

ATGTTGTCATCATTCAACAATGTCGCCGAAGAGGCCACCAGTGTCGCCGGAGAGGCCACCAAGGAGGCGCAAGAGCTCGAGATGGAAGCAACGGACGGCAACCGAACAGGACCTCCACTCGTTGAATTCCTAACGGAGACGCCAAAAACTGGTGTGTGTTGTGTAGAAATCATGGAGAAGATCAAGCAAATCTAA

Coding sequence (CDS)

ATGTTGTCATCATTCAACAATGTCGCCGAAGAGGCCACCAGTGTCGCCGGAGAGGCCACCAAGGAGGCGCAAGAGCTCGAGATGGAAGCAACGGACGGCAACCGAACAGGACCTCCACTCGTTGAATTCCTAACGGAGACGCCAAAAACTGGTGTGTGTTGTGTAGAAATCATGGAGAAGATCAAGCAAATCTAA

Protein sequence

MLSSFNNVAEEATSVAGEATKEAQELEMEATDGNRTGPPLVEFLTETPKTGVCCVEIMEKIKQI
Homology
BLAST of MC05g_new0092 vs. NCBI nr
Match: XP_022159310.1 (uncharacterized protein LOC111025719 [Momordica charantia])

HSP 1 Score: 48.5 bits (114), Expect = 9.03e-05
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 0

Query: 28 MEATDGNRTGPPLVEFLTETPKT-GVCCV-EIMEKIKQI 64
          MEA DGNRTGPPLVEFL ETPKT G+  +   +E++K+I
Sbjct: 1  MEAADGNRTGPPLVEFLAETPKTEGLSMILSELERVKKI 39

BLAST of MC05g_new0092 vs. ExPASy TrEMBL
Match: A0A6J1DYC1 (uncharacterized protein LOC111025719 OS=Momordica charantia OX=3673 GN=LOC111025719 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.37e-05
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 0

Query: 28 MEATDGNRTGPPLVEFLTETPKT-GVCCV-EIMEKIKQI 64
          MEA DGNRTGPPLVEFL ETPKT G+  +   +E++K+I
Sbjct: 1  MEAADGNRTGPPLVEFLAETPKTEGLSMILSELERVKKI 39

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022159310.19.03e-0564.10uncharacterized protein LOC111025719 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1DYC14.37e-0564.10uncharacterized protein LOC111025719 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 9..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC05g_new0092.1MC05g_new0092.1mRNA