MC05g1534 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC05g1534
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRibosomal protein L23
LocationMC05: 19121948 .. 19122145 (-)
RNA-Seq ExpressionMC05g1534
SyntenyMC05g1534
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGATAGAGAATCCATCGCTGTCTCGGCTGTGCTATCGAAAGCTTTGGAGAAGTCGGAATAGGAGAGCACTCATCATAGGGTGGGCTTACTACTTGGATGCTTTGAGCAGTTATCCGCTCCGCACTTGGCTACCCGAAGTTTATCATGGGCACGATAGCTGGTACACCAGAGGTGCGTCCTTCCTGGTCATCTCATAC

mRNA sequence

GGGATAGAGAATCCATCGCTGTCTCGGCTGTGCTATCGAAAGCTTTGGAGAAGTCGGAATAGGAGAGCACTCATCATAGGGTGGGCTTACTACTTGGATGCTTTGAGCAGTTATCCGCTCCGCACTTGGCTACCCGAAGTTTATCATGGGCACGATAGCTGGTACACCAGAGGTGCGTCCTTCCTGGTCATCTCATAC

Coding sequence (CDS)

GGGATAGAGAATCCATCGCTGTCTCGGCTGTGCTATCGAAAGCTTTGGAGAAGTCGGAATAGGAGAGCACTCATCATAGGGTGGGCTTACTACTTGGATGCTTTGAGCAGTTATCCGCTCCGCACTTGGCTACCCGAAGTTTATCATGGGCACGATAGCTGGTACACCAGAGGTGCGTCCTTCCTGGTCATCTCATAC

Protein sequence

GIENPSLSRLCYRKLWRSRNRRALIIGWAYYLDALSSYPLRTWLPEVYHGHDSWYTRGASFLVISY
Homology
BLAST of MC05g1534 vs. NCBI nr
Match: PHU05660.1 (hypothetical protein BC332_26482 [Capsicum chinense])

HSP 1 Score: 132 bits (331), Expect = 9.12e-38
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 0

Query: 1   GIENPSLSRLCYRKLWRSRNRRALIIGWAYYLDALSSYPLRTWLPEVYHGHDSWYTRGAS 60
           G+ENPSLSRLCYRKLW+SRNRRALI+GWAYYLDA SSYPLRTW P +YHGH++WYTRG S
Sbjct: 67  GVENPSLSRLCYRKLWKSRNRRALILGWAYYLDAFSSYPLRTWRPSIYHGHNNWYTRGVS 126

Query: 61  FLVISY 66
           FLV+SY
Sbjct: 127 FLVLSY 132

BLAST of MC05g1534 vs. NCBI nr
Match: YP_010046255.1 (ribosomal protein L23 [Dolichandrone spathacea] >YP_010046269.1 ribosomal protein L23 [Dolichandrone spathacea] >QQK38290.1 ribosomal protein L23 [Dolichandrone spathacea] >QQK38296.1 ribosomal protein L23 [Dolichandrone spathacea])

HSP 1 Score: 129 bits (324), Expect = 2.93e-37
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 1  GIENPSLSRLCYRKLWRSRNRRALIIGWAYYLDALSSYPLRTWLPEVYHGHDSWYTRGAS 60
          G ENPSLSRLCYRKLW SRNRRALI+GWAYYLDA SSYPLRTWLP VY GHD+WYTRGAS
Sbjct: 24 GAENPSLSRLCYRKLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGAS 83

Query: 61 FLVISY 66
          F V+SY
Sbjct: 84 FPVLSY 89

BLAST of MC05g1534 vs. NCBI nr
Match: YP_009342976.1 (ribosomal protein L23 [Carpinus putoensis] >APS87190.1 ribosomal protein L23 [Carpinus putoensis])

HSP 1 Score: 128 bits (321), Expect = 8.17e-37
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 1  GIENPSLSRLCYRKLWRSRNRRALIIGWAYYLDALSSYPLRTWLPEVYHGHDSWYTRGAS 60
          G ENPSLSRLCYR+LW SRNRRALI+GWAYYLDA SSYPLRTWLP VY GHD+WYTRGAS
Sbjct: 23 GAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGAS 82

Query: 61 FLVISY 66
          F V+SY
Sbjct: 83 FPVLSY 88

BLAST of MC05g1534 vs. NCBI nr
Match: YP_010143470.1 (ribosomal protein L23 [Peganum harmala] >YP_010143482.1 ribosomal protein L23 [Peganum harmala] >QTV76597.1 ribosomal protein L23 [Lonicera macranthoides] >QWC55080.1 ribosomal protein L23 [Peganum nigellastrum] >QHG11224.1 ribosomal protein L23 [Peganum harmala] >QHG11226.1 ribosomal protein L23 [Peganum harmala] >QQL04677.1 ribosomal protein L23 [Peganum harmala])

HSP 1 Score: 128 bits (321), Expect = 8.41e-37
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 1  GIENPSLSRLCYRKLWRSRNRRALIIGWAYYLDALSSYPLRTWLPEVYHGHDSWYTRGAS 60
          G ENPSLSRLCYR+LW SRNRRALI+GWAYYLDA SSYPLRTWLP VY GHD+WYTRGAS
Sbjct: 24 GAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGAS 83

Query: 61 FLVISY 66
          F V+SY
Sbjct: 84 FPVLSY 89

BLAST of MC05g1534 vs. NCBI nr
Match: GFQ08762.1 (hypothetical protein PHJA_003020200 [Phtheirospermum japonicum] >GFQ08765.1 hypothetical protein PHJA_003020500 [Phtheirospermum japonicum])

HSP 1 Score: 129 bits (324), Expect = 1.03e-36
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 1   GIENPSLSRLCYRKLWRSRNRRALIIGWAYYLDALSSYPLRTWLPEVYHGHDSWYTRGAS 60
           G ENPSLSRLCYRKLW SRNRRALI+GWAYYLDA SSYPLRTWLP VY GHD+WYTRGAS
Sbjct: 66  GAENPSLSRLCYRKLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGAS 125

Query: 61  FLVISY 66
           F V+SY
Sbjct: 126 FPVLSY 131

BLAST of MC05g1534 vs. ExPASy TrEMBL
Match: A0A2G3BGQ9 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_26482 PE=4 SV=1)

HSP 1 Score: 132 bits (331), Expect = 4.41e-38
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 0

Query: 1   GIENPSLSRLCYRKLWRSRNRRALIIGWAYYLDALSSYPLRTWLPEVYHGHDSWYTRGAS 60
           G+ENPSLSRLCYRKLW+SRNRRALI+GWAYYLDA SSYPLRTW P +YHGH++WYTRG S
Sbjct: 67  GVENPSLSRLCYRKLWKSRNRRALILGWAYYLDAFSSYPLRTWRPSIYHGHNNWYTRGVS 126

Query: 61  FLVISY 66
           FLV+SY
Sbjct: 127 FLVLSY 132

BLAST of MC05g1534 vs. ExPASy TrEMBL
Match: A0A7T6XCJ4 (Ribosomal protein L23 OS=Dolichandrone spathacea OX=241844 GN=rpl23 PE=4 SV=1)

HSP 1 Score: 129 bits (324), Expect = 1.42e-37
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 1  GIENPSLSRLCYRKLWRSRNRRALIIGWAYYLDALSSYPLRTWLPEVYHGHDSWYTRGAS 60
          G ENPSLSRLCYRKLW SRNRRALI+GWAYYLDA SSYPLRTWLP VY GHD+WYTRGAS
Sbjct: 24 GAENPSLSRLCYRKLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGAS 83

Query: 61 FLVISY 66
          F V+SY
Sbjct: 84 FPVLSY 89

BLAST of MC05g1534 vs. ExPASy TrEMBL
Match: A0A1L6V072 (Ribosomal protein L23 OS=Carpinus putoensis OX=88033 GN=rpl23 PE=4 SV=1)

HSP 1 Score: 128 bits (321), Expect = 3.95e-37
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 1  GIENPSLSRLCYRKLWRSRNRRALIIGWAYYLDALSSYPLRTWLPEVYHGHDSWYTRGAS 60
          G ENPSLSRLCYR+LW SRNRRALI+GWAYYLDA SSYPLRTWLP VY GHD+WYTRGAS
Sbjct: 23 GAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGAS 82

Query: 61 FLVISY 66
          F V+SY
Sbjct: 83 FPVLSY 88

BLAST of MC05g1534 vs. ExPASy TrEMBL
Match: A0A6B9QQT2 (Ribosomal protein L23 OS=Peganum harmala OX=43879 GN=rpl23 PE=4 SV=1)

HSP 1 Score: 128 bits (321), Expect = 4.07e-37
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 1  GIENPSLSRLCYRKLWRSRNRRALIIGWAYYLDALSSYPLRTWLPEVYHGHDSWYTRGAS 60
          G ENPSLSRLCYR+LW SRNRRALI+GWAYYLDA SSYPLRTWLP VY GHD+WYTRGAS
Sbjct: 24 GAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGAS 83

Query: 61 FLVISY 66
          F V+SY
Sbjct: 84 FPVLSY 89

BLAST of MC05g1534 vs. ExPASy TrEMBL
Match: A0A2G2X0M7 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_10757 PE=4 SV=1)

HSP 1 Score: 129 bits (324), Expect = 5.13e-37
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 1   GIENPSLSRLCYRKLWRSRNRRALIIGWAYYLDALSSYPLRTWLPEVYHGHDSWYTRGAS 60
           G ENPSLSRLCYRKLW SRNRRALI+GWAYYLDA SSYPLRTWLP VY GHD+WYTRGAS
Sbjct: 67  GAENPSLSRLCYRKLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRGAS 126

Query: 61  FLVISY 66
           F V+SY
Sbjct: 127 FPVLSY 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
PHU05660.19.12e-3883.33hypothetical protein BC332_26482 [Capsicum chinense][more]
YP_010046255.12.93e-3786.36ribosomal protein L23 [Dolichandrone spathacea] >YP_010046269.1 ribosomal protei... [more]
YP_009342976.18.17e-3784.85ribosomal protein L23 [Carpinus putoensis] >APS87190.1 ribosomal protein L23 [Ca... [more]
YP_010143470.18.41e-3784.85ribosomal protein L23 [Peganum harmala] >YP_010143482.1 ribosomal protein L23 [P... [more]
GFQ08762.11.03e-3686.36hypothetical protein PHJA_003020200 [Phtheirospermum japonicum] >GFQ08765.1 hypo... [more]
Match NameE-valueIdentityDescription
A0A2G3BGQ94.41e-3883.33Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_26482 PE=4 SV=1[more]
A0A7T6XCJ41.42e-3786.36Ribosomal protein L23 OS=Dolichandrone spathacea OX=241844 GN=rpl23 PE=4 SV=1[more]
A0A1L6V0723.95e-3784.85Ribosomal protein L23 OS=Carpinus putoensis OX=88033 GN=rpl23 PE=4 SV=1[more]
A0A6B9QQT24.07e-3784.85Ribosomal protein L23 OS=Peganum harmala OX=43879 GN=rpl23 PE=4 SV=1[more]
A0A2G2X0M75.13e-3786.36Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_10757 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC05g1534.1MC05g1534.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome