MC05g1248 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g1248
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	40S ribosomal protein S17-like
Location	MC05: 16708787 .. 16709206 (-)
RNA-Seq Expression	MC05g1248
Synteny	MC05g1248

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCGCGTTCGCACCAAAACCGTGAAGAAATCTTCCCGTCAAGTCATCGAGCGCTACTACTCGCGCATGACCCTCGACTTCCATACGAACAAGAAGATCCTCGAAGAGGTCGCCATTATCCCCTCCAAGAGACTGCGAAACAAGATCGCCGGATTCTCCACTCACCTCATGAAGCGGATCCAGAAGGGACCGGTCCGTGGCATCTCCCTCAAGCTTCAAGAGGAAGAGCGCGAGCGCCGGATGGACTTCGTCCCTGACGTCTCCGCCATTAAAACCGATCAAATCGAGGTCGATAAGGAGACGCTCGATATGCTGTCTGCGCTTGGAATGAACGATATTCCAGGGCTTGTTCAGGTCGATCCGTCCGTGCCGCAACAGGTTGGATTTGGATTGGGCGGACGTGGTGGTAGGAGGTAC

mRNA sequence

ATGGGCCGCGTTCGCACCAAAACCGTGAAGAAATCTTCCCGTCAAGTCATCGAGCGCTACTACTCGCGCATGACCCTCGACTTCCATACGAACAAGAAGATCCTCGAAGAGGTCGCCATTATCCCCTCCAAGAGACTGCGAAACAAGATCGCCGGATTCTCCACTCACCTCATGAAGCGGATCCAGAAGGGACCGGTCCGTGGCATCTCCCTCAAGCTTCAAGAGGAAGAGCGCGAGCGCCGGATGGACTTCGTCCCTGACGTCTCCGCCATTAAAACCGATCAAATCGAGGTCGATAAGGAGACGCTCGATATGCTGTCTGCGCTTGGAATGAACGATATTCCAGGGCTTGTTCAGGTCGATCCGTCCGTGCCGCAACAGGTTGGATTTGGATTGGGCGGACGTGGTGGTAGGAGGTAC

Coding sequence (CDS)

ATGGGCCGCGTTCGCACCAAAACCGTGAAGAAATCTTCCCGTCAAGTCATCGAGCGCTACTACTCGCGCATGACCCTCGACTTCCATACGAACAAGAAGATCCTCGAAGAGGTCGCCATTATCCCCTCCAAGAGACTGCGAAACAAGATCGCCGGATTCTCCACTCACCTCATGAAGCGGATCCAGAAGGGACCGGTCCGTGGCATCTCCCTCAAGCTTCAAGAGGAAGAGCGCGAGCGCCGGATGGACTTCGTCCCTGACGTCTCCGCCATTAAAACCGATCAAATCGAGGTCGATAAGGAGACGCTCGATATGCTGTCTGCGCTTGGAATGAACGATATTCCAGGGCTTGTTCAGGTCGATCCGTCCGTGCCGCAACAGGTTGGATTTGGATTGGGCGGACGTGGTGGTAGGAGGTAC

Protein sequence

MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQVDPSVPQQVGFGLGGRGGRRY

Homology

[Close]

BLAST of MC05g1248 vs. ExPASy Swiss-Prot
Match: P49215 (40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3)

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-57
Identity = 122/145 (84.14%), Postives = 130/145 (89.66%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD IEVDKETLDMLSALGM+D+PG+V+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVK- 120

Query: 121 DPSVPQQV----GFGLGGRG-GRRY 141
             + PQ V     +G GG G GR+Y
Sbjct: 121 QAAEPQAVAALPSYGRGGGGFGRKY 144

[Close]

BLAST of MC05g1248 vs. ExPASy Swiss-Prot
Match: Q9LZ17 (40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3)

HSP 1 Score: 219.9 bits (559), Expect = 1.8e-56
Identity = 117/142 (82.39%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--SVPQQVGFGLGGRGGRRY 141
           +P  ++     FG GGR  RRY
Sbjct: 121 EPQQAMAPIAAFG-GGRAPRRY 141

[Close]

BLAST of MC05g1248 vs. ExPASy Swiss-Prot
Match: Q9SJ36 (40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3)

HSP 1 Score: 218.8 bits (556), Expect = 3.9e-56
Identity = 114/140 (81.43%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VDKETL+ML++LGM+D  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 DPSVPQQVGFGLGGRGGRRY 141
           +P          GGR  RRY
Sbjct: 121 EPQQAMAPIAAFGGRAPRRY 140

[Close]

BLAST of MC05g1248 vs. ExPASy Swiss-Prot
Match: P49205 (40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 117/142 (82.39%), Postives = 127/142 (89.44%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VDKETL+ML++LGM+D  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 DP--SVPQQVGFGLGGRGGRRY 141
           DP  ++     FG GGR  RRY
Sbjct: 121 DPQQAMAPIPAFG-GGRAPRRY 141

[Close]

BLAST of MC05g1248 vs. ExPASy Swiss-Prot
Match: Q9SQZ1 (40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3)

HSP 1 Score: 210.7 bits (535), Expect = 1.1e-53
Identity = 112/140 (80.00%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIK D ++VDKETL+ML++LGM+DI G+ QV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 DPSVPQQVGFGLGGRGGRRY 141
           +    Q +   + GR   RY
Sbjct: 121 E--TQQAMAPAVFGRPAGRY 138

[Close]

BLAST of MC05g1248 vs. NCBI nr
Match: XP_022144698.1 (40S ribosomal protein S17-like [Momordica charantia])

HSP 1 Score: 270 bits (690), Expect = 4.80e-91
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPSVPQQVGFGLGGRGGRRY 140
           DPSVPQQVGFGLGGRGGRRY
Sbjct: 121 DPSVPQQVGFGLGGRGGRRY 140

[Close]

BLAST of MC05g1248 vs. NCBI nr
Match: XP_038904935.1 (40S ribosomal protein S17-like [Benincasa hispida])

HSP 1 Score: 261 bits (668), Expect = 1.05e-87
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD+SA+KTDQIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPSVPQQVGFGLGGRGGRRY 140
           DP+VPQQVGFGLGGRG RRY
Sbjct: 121 DPTVPQQVGFGLGGRG-RRY 139

[Close]

BLAST of MC05g1248 vs. NCBI nr
Match: XP_008442886.1 (PREDICTED: 40S ribosomal protein S17-like [Cucumis melo] >KAA0043841.1 40S ribosomal protein S17-like [Cucumis melo var. makuwa] >TYK25293.1 40S ribosomal protein S17-like [Cucumis melo var. makuwa])

HSP 1 Score: 261 bits (666), Expect = 2.12e-87
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPSVPQQVGFGLGGRGGRRY 140
           DP+VPQQVGFGLGGRG RRY
Sbjct: 121 DPTVPQQVGFGLGGRG-RRY 139

[Close]

BLAST of MC05g1248 vs. NCBI nr
Match: XP_004136500.1 (40S ribosomal protein S17 [Cucumis sativus])

HSP 1 Score: 260 bits (664), Expect = 4.28e-87
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMT+DFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPSVPQQVGFGLGGRGGRRY 140
           DP+VPQQVGFGLGGRG RRY
Sbjct: 121 DPTVPQQVGFGLGGRG-RRY 139

[Close]

BLAST of MC05g1248 vs. NCBI nr
Match: KAE8651099.1 (hypothetical protein Csa_001438 [Cucumis sativus])

HSP 1 Score: 258 bits (658), Expect = 7.16e-86
Identity = 133/136 (97.79%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMT+DFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPSVPQQVGFGLGGRG 136
           DP+VPQQVGFGLGGRG
Sbjct: 121 DPTVPQQVGFGLGGRG 136

[Close]

BLAST of MC05g1248 vs. ExPASy TrEMBL
Match: A0A6J1CU03 (40S ribosomal protein S17-like OS=Momordica charantia OX=3673 GN=LOC111014323 PE=3 SV=1)

HSP 1 Score: 270 bits (690), Expect = 2.32e-91
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPSVPQQVGFGLGGRGGRRY 140
           DPSVPQQVGFGLGGRGGRRY
Sbjct: 121 DPSVPQQVGFGLGGRGGRRY 140

[Close]

BLAST of MC05g1248 vs. ExPASy TrEMBL
Match: A0A5A7TQK2 (40S ribosomal protein S17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004290 PE=3 SV=1)

HSP 1 Score: 261 bits (666), Expect = 1.03e-87
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPSVPQQVGFGLGGRGGRRY 140
           DP+VPQQVGFGLGGRG RRY
Sbjct: 121 DPTVPQQVGFGLGGRG-RRY 139

[Close]

BLAST of MC05g1248 vs. ExPASy TrEMBL
Match: A0A1S3B6R7 (40S ribosomal protein S17-like OS=Cucumis melo OX=3656 GN=LOC103486651 PE=3 SV=1)

HSP 1 Score: 261 bits (666), Expect = 1.03e-87
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPSVPQQVGFGLGGRGGRRY 140
           DP+VPQQVGFGLGGRG RRY
Sbjct: 121 DPTVPQQVGFGLGGRG-RRY 139

[Close]

BLAST of MC05g1248 vs. ExPASy TrEMBL
Match: A0A0A0LB02 (40S ribosomal protein S17 OS=Cucumis sativus OX=3659 GN=Csa_3G778310 PE=3 SV=1)

HSP 1 Score: 260 bits (664), Expect = 2.07e-87
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMT+DFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPSVPQQVGFGLGGRGGRRY 140
           DP+VPQQVGFGLGGRG RRY
Sbjct: 121 DPTVPQQVGFGLGGRG-RRY 139

[Close]

BLAST of MC05g1248 vs. ExPASy TrEMBL
Match: A0A6J1FC93 (40S ribosomal protein S17-like OS=Cucurbita moschata OX=3662 GN=LOC111444300 PE=3 SV=1)

HSP 1 Score: 256 bits (653), Expect = 9.87e-86
Identity = 134/140 (95.71%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVD+ETLDMLSALGM DIPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120

Query: 121 DPSVPQQVGFGLGGRGGRRY 140
           DP+VPQQV FGLGGRG RRY
Sbjct: 121 DPTVPQQVAFGLGGRG-RRY 139

[Close]

BLAST of MC05g1248 vs. TAIR 10
Match: AT5G04800.1 (Ribosomal S17 family protein )

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-57
Identity = 117/142 (82.39%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--SVPQQVGFGLGGRGGRRY 141
           +P  ++     FG GGR  RRY
Sbjct: 121 EPQQAMAPIAAFG-GGRAPRRY 141

[Close]

BLAST of MC05g1248 vs. TAIR 10
Match: AT5G04800.2 (Ribosomal S17 family protein )

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-57
Identity = 117/142 (82.39%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--SVPQQVGFGLGGRGGRRY 141
           +P  ++     FG GGR  RRY
Sbjct: 121 EPQQAMAPIAAFG-GGRAPRRY 141

[Close]

BLAST of MC05g1248 vs. TAIR 10
Match: AT5G04800.3 (Ribosomal S17 family protein )

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-57
Identity = 117/142 (82.39%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--SVPQQVGFGLGGRGGRRY 141
           +P  ++     FG GGR  RRY
Sbjct: 121 EPQQAMAPIAAFG-GGRAPRRY 141

[Close]

BLAST of MC05g1248 vs. TAIR 10
Match: AT5G04800.4 (Ribosomal S17 family protein )

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-57
Identity = 117/142 (82.39%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--SVPQQVGFGLGGRGGRRY 141
           +P  ++     FG GGR  RRY
Sbjct: 121 EPQQAMAPIAAFG-GGRAPRRY 141

[Close]

BLAST of MC05g1248 vs. TAIR 10
Match: AT2G05220.1 (Ribosomal S17 family protein )

HSP 1 Score: 218.8 bits (556), Expect = 2.8e-57
Identity = 114/140 (81.43%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VDKETL+ML++LGM+D  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 DPSVPQQVGFGLGGRGGRRY 141
           +P          GGR  RRY
Sbjct: 121 EPQQAMAPIAAFGGRAPRRY 140

The following BLAST results are available for this feature:

BLAST of MC05g1248 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49215	1.6e-57	84.14	40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3	[more]
Q9LZ17	1.8e-56	82.39	40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3	[more]
Q9SJ36	3.9e-56	81.43	40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3	[more]
P49205	1.5e-55	82.39	40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3	[more]
Q9SQZ1	1.1e-53	80.00	40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3	[more]

BLAST of MC05g1248 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144698.1	4.80e-91	100.00	40S ribosomal protein S17-like [Momordica charantia]	[more]
XP_038904935.1	1.05e-87	97.14	40S ribosomal protein S17-like [Benincasa hispida]	[more]
XP_008442886.1	2.12e-87	97.86	PREDICTED: 40S ribosomal protein S17-like [Cucumis melo] >KAA0043841.1 40S ribos...	[more]
XP_004136500.1	4.28e-87	97.14	40S ribosomal protein S17 [Cucumis sativus]	[more]
KAE8651099.1	7.16e-86	97.79	hypothetical protein Csa_001438 [Cucumis sativus]	[more]

BLAST of MC05g1248 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CU03	2.32e-91	100.00	40S ribosomal protein S17-like OS=Momordica charantia OX=3673 GN=LOC111014323 PE...	[more]
A0A5A7TQK2	1.03e-87	97.86	40S ribosomal protein S17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B6R7	1.03e-87	97.86	40S ribosomal protein S17-like OS=Cucumis melo OX=3656 GN=LOC103486651 PE=3 SV=1	[more]
A0A0A0LB02	2.07e-87	97.14	40S ribosomal protein S17 OS=Cucumis sativus OX=3659 GN=Csa_3G778310 PE=3 SV=1	[more]
A0A6J1FC93	9.87e-86	95.71	40S ribosomal protein S17-like OS=Cucurbita moschata OX=3662 GN=LOC111444300 PE=...	[more]

BLAST of MC05g1248 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04800.1	1.3e-57	82.39	Ribosomal S17 family protein	[more]
AT5G04800.2	1.3e-57	82.39	Ribosomal S17 family protein	[more]
AT5G04800.3	1.3e-57	82.39	Ribosomal S17 family protein	[more]
AT5G04800.4	1.3e-57	82.39	Ribosomal S17 family protein	[more]
AT2G05220.1	2.8e-57	81.43	Ribosomal S17 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036401	Ribosomal protein S17e-like superfamily	GENE3D	1.10.60.20		coord: 1..62 e-value: 1.0E-32 score: 113.4
IPR036401	Ribosomal protein S17e-like superfamily	SUPERFAMILY	116820	Rps17e-like	coord: 1..62
IPR001210	Ribosomal protein S17e	PFAM	PF00833	Ribosomal_S17e	coord: 1..120 e-value: 9.2E-61 score: 203.2
IPR001210	Ribosomal protein S17e	PANTHER	PTHR10732	40S RIBOSOMAL PROTEIN S17	coord: 1..140
IPR001210	Ribosomal protein S17e	HAMAP	MF_00511	Ribosomal_S17e	coord: 1..63 score: 19.982433
None	No IPR available	PANTHER	PTHR10732:SF5	40S RIBOSOMAL PROTEIN S17	coord: 1..140
IPR018273	Ribosomal protein S17e, conserved site	PROSITE	PS00712	RIBOSOMAL_S17E	coord: 41..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g1248.1	MC05g1248.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome