MC05g1209 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g1209
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	33 kDa ribonucleoprotein, chloroplastic
Location	MC05: 16299943 .. 16302102 (+)
RNA-Seq Expression	MC05g1209
Synteny	MC05g1209

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCCTCTGCAGTTTCAATGGCAGCTGCAGCTTCAGTTTCCTCTTCTCCACCCTGCAAGAAAGTCTTCAACCTCTCGCTCCCCCAACAACATTCCACCCAAATCCCCCCTCATTTCTCTCCGAAACAGAAGCCATTGAAGCTTCTCGAGCTCAAAATTCGCTTGCCTAACTTCCACCCTCTCTCTTTCTCCTCCGCGTCTCATCTTTACACCTCTCCACCTGCGTTCGACGAAGAGGAAAACGCAGAGGATGAAGAATTGGACGGAAAATCAGAAAGCCAAGAGGAAGAGGAGCAAACCGTATCGGCATCTCGCGAAGCTGGGAAGCTCTATATCGGAAATTTACCGTATGCGATGACCTCTTACCAATTGACTGAGGTGTTCGCGGAAGCCGGCCGCGTGGTTTCTGTACAGGTTCGAAACTTTTTTCTTCATCCTTTCGAATCGATTCCTCATGAAAACTCAAACTTCTTGACATTGATGCTTTGTTCTGTTAGGTTATTTATGACAAAGTTACAGATAGGAGCAGGGGATTCGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGAATGTTTGATGGCTCTGTATGTAAAACCCACTTACACCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCTCTCTCTCTCTCTCCATTTCATCTGGTTTTTTAGTTTTAACTTACCAATTCTGGAGATCTGTGCATAATTGATGAACTTTGAAGTTGATAGAAGTGGTAGAAAAAAACTGTGGATATCCATTCTGTTCTCCCTGTCTTTTTGTTTTTTTTTTAATCCATATTTTCGAATCAACTTGCGCACACCTCGACTAATCATGAAAAATTCATAGGATATTCGAACTTATTCCTTTTAAGCTCTTTGCTATTTACATTGATCCTTATTGACCCTTAGACCATCCCAGGATGGTTTCTCCCTCTAAGCTCTCTACCTGTTTCCTCTACTTACTAATTCTTTCGTTCTTACACGAAGGTTAAATTATAAGTTAGGCTCTTGAACTAATTCTTAAGATAGATATTTTGAATCTATTTGAAATTAATTTGCCCATGTAATCCTTATGTACGACAAACTTATTGAAGTCTTTTTAAAATATAGGTACTAGACACAATCTTGAAAGTTTTAGAATTAAACTTGTAATTTAACCTATTGAAAATAAGAGGGTATGTTTGATTGGTTGAACGTTAGAAAAACAAACAGATGCCAGTGCTTTTCCATTGATTTGAATGCAAGCTTTTGAATATTATGGTGTCTCTATAACTTTGTGATTTGACATTGTTGGTGGCTTTGTAGGATTGGAAAATATAATGTTAGTAATTGAAGGGTGCTGATGATTCTAATTCAAATGCAATAGAGTTTTAAAATGCTCAGACTTCTTCTAATGGTTTTGGTATCTCAATATGATGTCTCTGTATGATCAAGAAGTATATTGTTAGTGTAAGATATCGAAGATTGCTATAATGTTGCTAATAGTTGCCTTGATATCAGCAAATTGGCGGTCGGACAGTTCGGGTCAACTTCCCAGAAGTTCCAAGGGGAGGAGAAAAGGAAGTCATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTTGTAGATAGTCCTCACAAGATATATGCAGGAAACCTTGGTTGGGGACTTACTTCTCAGAGTCTTAGAGAGGCTTTTGAAGACCAACCAGGGATATTGGGTGCCAAGGTTATCTATGATAGAGCATCTGGAAGAAGTCGAGGTTTCGGGTTCGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTATGAATTCCATGAATGGGGTGGTAAGAAAGTAGAGTTTTACTTTCTAAATGAATGAGAATCTAAAATTAACTATTCAAATAGAGTAGTTGGCAACTTGAACTTGTGACAGAATTTAAAATGCTTTATCTTGCAAACTAAATTTACATTATTTTTAGAGAGCCATGAGAATATGTACCTGCATTTTGTACATTCAAGCCATACATTAACCTCTTCCTCTGCAAATATGTAAGCAGGAAGTCGAAGGGCGGCCGCTTCGGTTGAACATAGCTGCAGGACAGGCTCCAACTTCTCCAGCAGCATTCGAGAGAACCAAGAGTACTCTCGACAGTAGCGAACTGCTTACTAGTTTCAGTGCC

mRNA sequence

ATGTCAGCCTCTGCAGTTTCAATGGCAGCTGCAGCTTCAGTTTCCTCTTCTCCACCCTGCAAGAAAGTCTTCAACCTCTCGCTCCCCCAACAACATTCCACCCAAATCCCCCCTCATTTCTCTCCGAAACAGAAGCCATTGAAGCTTCTCGAGCTCAAAATTCGCTTGCCTAACTTCCACCCTCTCTCTTTCTCCTCCGCGTCTCATCTTTACACCTCTCCACCTGCGTTCGACGAAGAGGAAAACGCAGAGGATGAAGAATTGGACGGAAAATCAGAAAGCCAAGAGGAAGAGGAGCAAACCGTATCGGCATCTCGCGAAGCTGGGAAGCTCTATATCGGAAATTTACCGTATGCGATGACCTCTTACCAATTGACTGAGGTGTTCGCGGAAGCCGGCCGCGTGGTTTCTGTACAGGTTATTTATGACAAAGTTACAGATAGGAGCAGGGGATTCGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGAATGTTTGATGGCTCTCAAATTGGCGGTCGGACAGTTCGGGTCAACTTCCCAGAAGTTCCAAGGGGAGGAGAAAAGGAAGTCATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTTGTAGATAGTCCTCACAAGATATATGCAGGAAACCTTGGTTGGGGACTTACTTCTCAGAGTCTTAGAGAGGCTTTTGAAGACCAACCAGGGATATTGGGTGCCAAGGTTATCTATGATAGAGCATCTGGAAGAAGTCGAGGTTTCGGGTTCGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTATGAATTCCATGAATGGGGTGGAAGTCGAAGGGCGGCCGCTTCGGTTGAACATAGCTGCAGGACAGGCTCCAACTTCTCCAGCAGCATTCGAGAGAACCAAGAGTACTCTCGACAGTAGCGAACTGCTTACTAGTTTCAGTGCC

Coding sequence (CDS)

ATGTCAGCCTCTGCAGTTTCAATGGCAGCTGCAGCTTCAGTTTCCTCTTCTCCACCCTGCAAGAAAGTCTTCAACCTCTCGCTCCCCCAACAACATTCCACCCAAATCCCCCCTCATTTCTCTCCGAAACAGAAGCCATTGAAGCTTCTCGAGCTCAAAATTCGCTTGCCTAACTTCCACCCTCTCTCTTTCTCCTCCGCGTCTCATCTTTACACCTCTCCACCTGCGTTCGACGAAGAGGAAAACGCAGAGGATGAAGAATTGGACGGAAAATCAGAAAGCCAAGAGGAAGAGGAGCAAACCGTATCGGCATCTCGCGAAGCTGGGAAGCTCTATATCGGAAATTTACCGTATGCGATGACCTCTTACCAATTGACTGAGGTGTTCGCGGAAGCCGGCCGCGTGGTTTCTGTACAGGTTATTTATGACAAAGTTACAGATAGGAGCAGGGGATTCGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGAATGTTTGATGGCTCTCAAATTGGCGGTCGGACAGTTCGGGTCAACTTCCCAGAAGTTCCAAGGGGAGGAGAAAAGGAAGTCATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTTGTAGATAGTCCTCACAAGATATATGCAGGAAACCTTGGTTGGGGACTTACTTCTCAGAGTCTTAGAGAGGCTTTTGAAGACCAACCAGGGATATTGGGTGCCAAGGTTATCTATGATAGAGCATCTGGAAGAAGTCGAGGTTTCGGGTTCGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTATGAATTCCATGAATGGGGTGGAAGTCGAAGGGCGGCCGCTTCGGTTGAACATAGCTGCAGGACAGGCTCCAACTTCTCCAGCAGCATTCGAGAGAACCAAGAGTACTCTCGACAGTAGCGAACTGCTTACTAGTTTCAGTGCC

Protein sequence

MSASAVSMAAAASVSSSPPCKKVFNLSLPQQHSTQIPPHFSPKQKPLKLLELKIRLPNFHPLSFSSASHLYTSPPAFDEEENAEDEELDGKSESQEEEEQTVSASREAGKLYIGNLPYAMTSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFEDQPGILGAKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRLNIAAGQAPTSPAAFERTKSTLDSSELLTSFSA

Homology

[Close]

BLAST of MC05g1209 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 5.6e-82
Identity = 175/327 (53.52%), Postives = 231/327 (70.64%), Query Frame = 0


Query: 3   ASAVSMAAAASVSSSPPCKKVFNLSLPQQHSTQIPPHFSPKQKPL-------KLLELKIR 62
           +SAV+++AAA+ SS+      FN  L    ++Q+   F+PK   L        +L   IR
Sbjct: 7   SSAVAVSAAATASSA----ATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPLILHSNIR 66

Query: 63  LPNFHPLSFSSASHLYTSPPAFDEEENAEDEELDGKSESQEEEEQTVSASREAGKLYIGN 122
              F   + + AS       A  EEE   +EE D   E  EEE+QT  AS E G+LY+GN
Sbjct: 67  RHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGN 126

Query: 123 LPYAMTSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQI 182
           LPY +TS +L+++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAKEA++MF+ SQI
Sbjct: 127 LPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQI 186

Query: 183 GGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFEDQ 242
           GGRTV+VNFPEVPRGGE EVM  KIR +   +VDSPHK+YAGNLGW LTSQ L++AF DQ
Sbjct: 187 GGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQ 246

Query: 243 PGILGAKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRLNIAAGQ---- 302
           PG+LGAKVIY+R +GRSRGFGF+SFE+AE+ +SA+ +MNGVEVEGR LRLN+A+ +    
Sbjct: 247 PGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREKPT 306

Query: 303 -APTSPAAFERTKSTLDSSELLTSFSA 318
            +P S    E  +++L+S+E+L++ SA
Sbjct: 307 VSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]

BLAST of MC05g1209 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 3.7e-78
Identity = 179/341 (52.49%), Postives = 228/341 (66.86%), Query Frame = 0


Query: 1   MSASAVSMAAAASVSSS--------PPCKKVFNLSLPQQHSTQIPPHFSPKQKPLKLLEL 60
           MS    S AA AS SS+         P   V +LSL   ++     HF+ K    K    
Sbjct: 1   MSGCCFSFAATASTSSTSLLYLFTQKPKFSVDHLSLSTYNT-----HFNFKINSTK---- 60

Query: 61  KIRLPNFHPLSFSSASHLYTSPPAF-----------DEEE---NAEDEELDGKSESQEEE 120
              L    P+S    S ++ S  A            DEEE   +AE+EE     E +E+E
Sbjct: 61  ---LKAHFPISSLYRSSIFLSTCASVSDGVEVVQEDDEEEVALSAEEEE-----EIEEKE 120

Query: 121 EQTVSASREAGKLYIGNLPYAMTSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMA 180
           E+  S S E G+LY+GNLP++MTS QL+E+FAEAG V +V+++YD+VTDRSRGFAFVTM 
Sbjct: 121 ERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMG 180

Query: 181 TLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGN 240
           ++EEAKEAIR+FDGSQ+GGRTV+VNFPEVPRGGE+EVM  KIRS+Y  FVDSPHK+Y  N
Sbjct: 181 SVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVAN 240

Query: 241 LGWGLTSQSLREAFEDQPGILGAKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEV 300
           L W LTSQ LR+AF DQPG + AKVIYDR+SGRSRGFGF++F +AE   SA+++MN VE+
Sbjct: 241 LSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVEL 300

Query: 301 EGRPLRLNIAAGQAPTS--PAAFERTKSTLDSSELLTSFSA 318
           EGRPLRLN+A  +AP S  P      ++  D+SELL+S S+
Sbjct: 301 EGRPLRLNVAGQKAPVSSPPVVETSPENDSDNSELLSSLSS 324

[Close]

BLAST of MC05g1209 vs. ExPASy Swiss-Prot
Match: Q08937 (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.0e-40
Identity = 84/196 (42.86%), Postives = 126/196 (64.29%), Query Frame = 0


Query: 110 KLYIGNLPYAMTSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 169
           KL++GNLP+++ S  L  +F  AG V  V+VIYDK+T RSRGF FVTM+T EE + A + 
Sbjct: 88  KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147

Query: 170 FDGSQIGGRTVRVNFPEVP-----------RGGEKEVMGPKIRSSY------NKFVDSPH 229
           F+G +I GR +RVN    P           RGG     G +  +S        + VDS +
Sbjct: 148 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN 207

Query: 230 KIYAGNLGWGLTSQSLREAFEDQPGILGAKVIYDRASGRSRGFGFVSFETAEDAESAMNS 289
           ++Y GNL WG+   +L+E F +Q  ++ AKV+YDR SGRSRGFGFV++ ++++   A++S
Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267

[Close]

BLAST of MC05g1209 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-39
Identity = 83/196 (42.35%), Postives = 126/196 (64.29%), Query Frame = 0


Query: 110 KLYIGNLPYAMTSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 169
           KL++GNLP+++ S  L  +F  AG V  V+VIYDK++ RSRGF FVTM+T EE + A + 
Sbjct: 89  KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148

Query: 170 FDGSQIGGRTVRVNFPEVP-----------RGGEKEVMGPKIRSSY------NKFVDSPH 229
           F+G +I GR +RVN    P           RGG     G +  +S        + VDS +
Sbjct: 149 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN 208

Query: 230 KIYAGNLGWGLTSQSLREAFEDQPGILGAKVIYDRASGRSRGFGFVSFETAEDAESAMNS 289
           ++Y GNL WG+   +L+E F +Q  ++ AKV+YDR SGRSRGFGFV++ +A++   A++S
Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268

[Close]

BLAST of MC05g1209 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 8.4e-38
Identity = 103/272 (37.87%), Postives = 152/272 (55.88%), Query Frame = 0


Query: 32  HSTQIPPHFSPKQKPLK---LLELKIRLPNFHPLSFSSASHLYTSP-------PAFDEEE 91
           H   + P   P  KP      L      P+   LS SS+S  ++S          FD+ E
Sbjct: 9   HFLSLTPQTLPLPKPTSQTTSLSFFSLPPSSLNLSLSSSSSCFSSRFVRKVTLSDFDQIE 68

Query: 92  NAEDEELDGKSESQEEEEQTVSASREAGKLYIGNLPYAMTSYQLTEVFAEAGRVVSVQVI 151
           + ED + DG      EEE+  S      K+++GNLP++  S  L E+F  AG V  V+VI
Sbjct: 69  DVEDGD-DG-----VEEERNFSPDL---KIFVGNLPFSADSAALAELFERAGNVEMVEVI 128

Query: 152 YDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIR 211
           YDK+T RSRGF FVTM++ EE + A + F+G ++ GR +RVN    P   E        R
Sbjct: 129 YDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSR 188

Query: 212 SSYNKFVDSPHKIYAGNLGWGLTSQSLREAFEDQPGILGAKVIYDRASGRSRGFGFVSFE 271
              +   DS +++Y GNL WG+   +L   F +Q  ++ AKV+YDR SGRSRGFGFV++ 
Sbjct: 189 GGGS--FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYS 248

Query: 272 TAEDAESAMNSMNGVEVEGRPLRLNIAAGQAP 294
           +AE+  +A+ S++GV++ GR +R++ A  + P
Sbjct: 249 SAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 269

[Close]

BLAST of MC05g1209 vs. NCBI nr
Match: XP_022151379.1 (RNA-binding protein CP33, chloroplastic [Momordica charantia])

HSP 1 Score: 594 bits (1532), Expect = 1.57e-213
Identity = 316/317 (99.68%), Postives = 316/317 (99.68%), Query Frame = 0


Query: 1   MSASAVSMAAAASVSSSPPCKKVFNLSLPQQHSTQIPPHFSPKQKPLKLLELKIRLPNFH 60
           MSASAVSMAAAASVSSSP CKKVFNLSLPQQHSTQIPPHFSPKQKPLKLLELKIRLPNFH
Sbjct: 1   MSASAVSMAAAASVSSSPXCKKVFNLSLPQQHSTQIPPHFSPKQKPLKLLELKIRLPNFH 60

Query: 61  PLSFSSASHLYTSPPAFDEEENAEDEELDGKSESQEEEEQTVSASREAGKLYIGNLPYAM 120
           PLSFSSASHLYTSPPAFDEEENAEDEELDGKSESQEEEEQTVSASREAGKLYIGNLPYAM
Sbjct: 61  PLSFSSASHLYTSPPAFDEEENAEDEELDGKSESQEEEEQTVSASREAGKLYIGNLPYAM 120

Query: 121 TSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTV 180
           TSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTV
Sbjct: 121 TSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTV 180

Query: 181 RVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFEDQPGILG 240
           RVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFEDQPGILG
Sbjct: 181 RVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFEDQPGILG 240

Query: 241 AKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRLNIAAGQAPTSPAAFE 300
           AKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRLNIAAGQAPTSPAAFE
Sbjct: 241 AKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRLNIAAGQAPTSPAAFE 300

Query: 301 RTKSTLDSSELLTSFSA 317
           RTKSTLDSSELLTSFSA
Sbjct: 301 RTKSTLDSSELLTSFSA 317

[Close]

BLAST of MC05g1209 vs. NCBI nr
Match: XP_022983024.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 481 bits (1237), Expect = 2.01e-168
Identity = 261/324 (80.56%), Postives = 288/324 (88.89%), Query Frame = 0


Query: 1   MSASAVSMAAAASVSSSPPCKKVFNLSLPQQHSTQIPPHFSPKQKPLKLLELKIRLPNFH 60
           M+A+A S+++++S SSS PCKK+F  +   Q   +IP HFSPK KPLKLLEL+I LPNF+
Sbjct: 8   MAAAAASVSSSSSSSSSSPCKKLFFFT---QLPNRIPSHFSPKPKPLKLLELRIHLPNFY 67

Query: 61  PLSFSSASHLYTSPPAFDE-------EENAEDEELDGKSESQEEEEQTVSASREAGKLYI 120
           PL+FSSASHLY +PPAF+         ENAE EE DGK ES+EE+EQ VSASR+AGKLYI
Sbjct: 68  PLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAGKLYI 127

Query: 121 GNLPYAMTSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS 180
           GNLPYAMTS QLTEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS
Sbjct: 128 GNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS 187

Query: 181 QIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFE 240
            IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFE
Sbjct: 188 LIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFE 247

Query: 241 DQPGILGAKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRLNIAAGQAP 300
           +QPGIL AKVIYDR SGRSRGFGFVSFETAEDAESA++SMNGVEVEGRPLRLN+AA +AP
Sbjct: 248 NQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAADRAP 307

Query: 301 TSPAAFERTKSTLDSSELLTSFSA 317
           TSPAAF RT++T+DS+ELLTS SA
Sbjct: 308 TSPAAFTRTENTIDSNELLTSISA 328

[Close]

BLAST of MC05g1209 vs. NCBI nr
Match: XP_022934919.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata] >XP_022934920.1 33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata])

HSP 1 Score: 479 bits (1233), Expect = 7.89e-168
Identity = 260/324 (80.25%), Postives = 287/324 (88.58%), Query Frame = 0


Query: 1   MSASAVSMAAAASVSSSPPCKKVFNLSLPQQHSTQIPPHFSPKQKPLKLLELKIRLPNFH 60
           M+A+A S+++++S SSS PCKK+F      QH  +IP HFSPKQKPLKLLEL+I LPN +
Sbjct: 8   MAAAAASVSSSSSSSSSSPCKKLFFA----QHLNRIPSHFSPKQKPLKLLELRIHLPNIY 67

Query: 61  PLSFSSASHLYTSPPAFDE-------EENAEDEELDGKSESQEEEEQTVSASREAGKLYI 120
           PL+FSSASHLY +PPAF+         E+AE EE DG  ES+EE+EQ VSASR+AGKLYI
Sbjct: 68  PLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGSEESREEDEQKVSASRDAGKLYI 127

Query: 121 GNLPYAMTSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS 180
           GNLPYAMTS QLTEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS
Sbjct: 128 GNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS 187

Query: 181 QIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFE 240
            IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFE
Sbjct: 188 LIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFE 247

Query: 241 DQPGILGAKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRLNIAAGQAP 300
           +QPGIL AKVIYDR SGRSRGFGFVSFETAEDAESA++SMNGVEVEGRPLRLN+AA +AP
Sbjct: 248 NQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAADRAP 307

Query: 301 TSPAAFERTKSTLDSSELLTSFSA 317
           TSPAAF RT++T+DS+ELLTS SA
Sbjct: 308 TSPAAFTRTENTIDSNELLTSISA 327

[Close]

BLAST of MC05g1209 vs. NCBI nr
Match: KAG6580756.1 (hypothetical protein SDJN03_20758, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 478 bits (1229), Expect = 3.32e-167
Identity = 265/332 (79.82%), Postives = 288/332 (86.75%), Query Frame = 0


Query: 1   MSASAVSMAAAA--------SVSSSPPCKKVFNLSLPQQHSTQIPPHFSPKQKPLKLLEL 60
           MSAS+++MAAAA        S SSS PCKK+F      QH  +IP HFSPKQKPLKLLEL
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSSPCKKLFFA----QHLNRIPSHFSPKQKPLKLLEL 60

Query: 61  KIRLPNFHPLSFSSASHLYTSPPAFDE-------EENAEDEELDGKSESQEEEEQTVSAS 120
           +I LPN +PL+FSSASHLY +PPAF+         E+AE EE DG  ES+EE+EQ VSAS
Sbjct: 61  RIHLPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSAS 120

Query: 121 REAGKLYIGNLPYAMTSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKE 180
           R+AGKLYIGNLPYAMTS QLTEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKE
Sbjct: 121 RDAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKE 180

Query: 181 AIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTS 240
           AIRMFDGS IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTS
Sbjct: 181 AIRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTS 240

Query: 241 QSLREAFEDQPGILGAKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRL 300
           QSLREAFE+QPGIL AKVIYDR SGRSRGFGFVSFETAEDAESA++SMNGVEVEGRPLRL
Sbjct: 241 QSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRL 300

Query: 301 NIAAGQAPTSPAAFERTKSTLDSSELLTSFSA 317
           N+AA +APTSPAAF RT++T+DS+ELLTS SA
Sbjct: 301 NMAADRAPTSPAAFTRTENTIDSNELLTSISA 328

[Close]

BLAST of MC05g1209 vs. NCBI nr
Match: XP_023527627.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 477 bits (1228), Expect = 5.25e-167
Identity = 265/335 (79.10%), Postives = 288/335 (85.97%), Query Frame = 0


Query: 1   MSASAVSMAAAA-----------SVSSSPPCKKVFNLSLPQQHSTQIPPHFSPKQKPLKL 60
           MSAS+++MAAAA           S SSS PCKK+F      QH  +IP HFSPKQKPLKL
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSSSSSPCKKLFFA----QHLNRIPSHFSPKQKPLKL 60

Query: 61  LELKIRLPNFHPLSFSSASHLYTSPPAFDE-------EENAEDEELDGKSESQEEEEQTV 120
           LEL+I LPN +PL+FSSASHLY +PPAF+         E+AE EE DG  ES+EE+EQ V
Sbjct: 61  LELRIHLPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGSEESREEDEQKV 120

Query: 121 SASREAGKLYIGNLPYAMTSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEE 180
           SASR+AGKLYIGNLPYAMTS QLTEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEE
Sbjct: 121 SASRDAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEE 180

Query: 181 AKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWG 240
           AKEAIRMFDGS IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWG
Sbjct: 181 AKEAIRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWG 240

Query: 241 LTSQSLREAFEDQPGILGAKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRP 300
           LTSQSLREAFE+QPGIL AKVIYDR SGRSRGFGFVSFETAEDAESA++SMNGVEVEGRP
Sbjct: 241 LTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRP 300

Query: 301 LRLNIAAGQAPTSPAAFERTKSTLDSSELLTSFSA 317
           LRLN+AA +APTSPAAF RT++T+DS+ELLTS SA
Sbjct: 301 LRLNMAADRAPTSPAAFTRTENTIDSNELLTSISA 331

[Close]

BLAST of MC05g1209 vs. ExPASy TrEMBL
Match: A0A6J1DCX3 (RNA-binding protein CP33, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019332 PE=4 SV=1)

HSP 1 Score: 594 bits (1532), Expect = 7.58e-214
Identity = 316/317 (99.68%), Postives = 316/317 (99.68%), Query Frame = 0


Query: 1   MSASAVSMAAAASVSSSPPCKKVFNLSLPQQHSTQIPPHFSPKQKPLKLLELKIRLPNFH 60
           MSASAVSMAAAASVSSSP CKKVFNLSLPQQHSTQIPPHFSPKQKPLKLLELKIRLPNFH
Sbjct: 1   MSASAVSMAAAASVSSSPXCKKVFNLSLPQQHSTQIPPHFSPKQKPLKLLELKIRLPNFH 60

Query: 61  PLSFSSASHLYTSPPAFDEEENAEDEELDGKSESQEEEEQTVSASREAGKLYIGNLPYAM 120
           PLSFSSASHLYTSPPAFDEEENAEDEELDGKSESQEEEEQTVSASREAGKLYIGNLPYAM
Sbjct: 61  PLSFSSASHLYTSPPAFDEEENAEDEELDGKSESQEEEEQTVSASREAGKLYIGNLPYAM 120

Query: 121 TSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTV 180
           TSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTV
Sbjct: 121 TSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTV 180

Query: 181 RVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFEDQPGILG 240
           RVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFEDQPGILG
Sbjct: 181 RVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFEDQPGILG 240

Query: 241 AKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRLNIAAGQAPTSPAAFE 300
           AKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRLNIAAGQAPTSPAAFE
Sbjct: 241 AKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRLNIAAGQAPTSPAAFE 300

Query: 301 RTKSTLDSSELLTSFSA 317
           RTKSTLDSSELLTSFSA
Sbjct: 301 RTKSTLDSSELLTSFSA 317

[Close]

BLAST of MC05g1209 vs. ExPASy TrEMBL
Match: A0A6J1J651 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481694 PE=4 SV=1)

HSP 1 Score: 481 bits (1237), Expect = 9.74e-169
Identity = 261/324 (80.56%), Postives = 288/324 (88.89%), Query Frame = 0


Query: 1   MSASAVSMAAAASVSSSPPCKKVFNLSLPQQHSTQIPPHFSPKQKPLKLLELKIRLPNFH 60
           M+A+A S+++++S SSS PCKK+F  +   Q   +IP HFSPK KPLKLLEL+I LPNF+
Sbjct: 8   MAAAAASVSSSSSSSSSSPCKKLFFFT---QLPNRIPSHFSPKPKPLKLLELRIHLPNFY 67

Query: 61  PLSFSSASHLYTSPPAFDE-------EENAEDEELDGKSESQEEEEQTVSASREAGKLYI 120
           PL+FSSASHLY +PPAF+         ENAE EE DGK ES+EE+EQ VSASR+AGKLYI
Sbjct: 68  PLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAGKLYI 127

Query: 121 GNLPYAMTSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS 180
           GNLPYAMTS QLTEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS
Sbjct: 128 GNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS 187

Query: 181 QIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFE 240
            IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFE
Sbjct: 188 LIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFE 247

Query: 241 DQPGILGAKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRLNIAAGQAP 300
           +QPGIL AKVIYDR SGRSRGFGFVSFETAEDAESA++SMNGVEVEGRPLRLN+AA +AP
Sbjct: 248 NQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAADRAP 307

Query: 301 TSPAAFERTKSTLDSSELLTSFSA 317
           TSPAAF RT++T+DS+ELLTS SA
Sbjct: 308 TSPAAFTRTENTIDSNELLTSISA 328

[Close]

BLAST of MC05g1209 vs. ExPASy TrEMBL
Match: A0A6J1F948 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441950 PE=4 SV=1)

HSP 1 Score: 479 bits (1233), Expect = 3.82e-168
Identity = 260/324 (80.25%), Postives = 287/324 (88.58%), Query Frame = 0


Query: 1   MSASAVSMAAAASVSSSPPCKKVFNLSLPQQHSTQIPPHFSPKQKPLKLLELKIRLPNFH 60
           M+A+A S+++++S SSS PCKK+F      QH  +IP HFSPKQKPLKLLEL+I LPN +
Sbjct: 8   MAAAAASVSSSSSSSSSSPCKKLFFA----QHLNRIPSHFSPKQKPLKLLELRIHLPNIY 67

Query: 61  PLSFSSASHLYTSPPAFDE-------EENAEDEELDGKSESQEEEEQTVSASREAGKLYI 120
           PL+FSSASHLY +PPAF+         E+AE EE DG  ES+EE+EQ VSASR+AGKLYI
Sbjct: 68  PLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGSEESREEDEQKVSASRDAGKLYI 127

Query: 121 GNLPYAMTSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS 180
           GNLPYAMTS QLTEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS
Sbjct: 128 GNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGS 187

Query: 181 QIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFE 240
            IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFE
Sbjct: 188 LIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFE 247

Query: 241 DQPGILGAKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRLNIAAGQAP 300
           +QPGIL AKVIYDR SGRSRGFGFVSFETAEDAESA++SMNGVEVEGRPLRLN+AA +AP
Sbjct: 248 NQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAADRAP 307

Query: 301 TSPAAFERTKSTLDSSELLTSFSA 317
           TSPAAF RT++T+DS+ELLTS SA
Sbjct: 308 TSPAAFTRTENTIDSNELLTSISA 327

[Close]

BLAST of MC05g1209 vs. ExPASy TrEMBL
Match: A0A1S3B7N1 (33 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486688 PE=4 SV=1)

HSP 1 Score: 463 bits (1191), Expect = 7.59e-162
Identity = 253/316 (80.06%), Postives = 274/316 (86.71%), Query Frame = 0


Query: 9   AAAASVSSSPPCKKVFNLSLPQQHSTQIPPHFSPKQKPLKLLELKIRLPNFHPLSFSSAS 68
           AAAAS SSSP  KK F      QH  QIP HFSPK   LKLL L I LPNF+PLSFSS S
Sbjct: 10  AAAASASSSPLYKKHFFT----QHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLSFSSVS 69

Query: 69  HLYTSPPAFDEEENAEDE-------ELDGKSESQEEEEQTVSASREAGKLYIGNLPYAMT 128
           H++ +PPAFDE E ++ E       E DG+ ++QEE+EQ +S SREAGKLYIGNLPYAMT
Sbjct: 70  HIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNLPYAMT 129

Query: 129 SYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVR 188
           S QL+EVFAEAG+VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVR
Sbjct: 130 SSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVR 189

Query: 189 VNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFEDQPGILGA 248
           VNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR+AFE+QPGIL A
Sbjct: 190 VNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSA 249

Query: 249 KVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRLNIAAGQAPTSPAAFER 308
           KVIYDRASG+SRGFGFVSFETAEDAESA+ SMNGVEVEGRPLRLNIAA +APTSPAAF R
Sbjct: 250 KVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSPAAFPR 309

Query: 309 TKSTLDSSELLTSFSA 317
           T++T+DS ELLTS SA
Sbjct: 310 TENTIDSKELLTSISA 321

[Close]

BLAST of MC05g1209 vs. ExPASy TrEMBL
Match: A0A5D3DPZ1 (33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004690 PE=4 SV=1)

HSP 1 Score: 462 bits (1190), Expect = 1.08e-161
Identity = 253/316 (80.06%), Postives = 274/316 (86.71%), Query Frame = 0


Query: 9   AAAASVSSSPPCKKVFNLSLPQQHSTQIPPHFSPKQKPLKLLELKIRLPNFHPLSFSSAS 68
           AAAAS SSSP  KK F      QH  QIP HFSPK   LKLL L I LPNF+PLSFSS S
Sbjct: 10  AAAASASSSPLYKKHFFT----QHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLSFSSVS 69

Query: 69  HLYTSPPAFDEEENAEDE-------ELDGKSESQEEEEQTVSASREAGKLYIGNLPYAMT 128
           H++ +PPAFDE E ++ E       E DG+ ++QEE+EQ +S SREAGKLYIGNLPYAMT
Sbjct: 70  HVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNLPYAMT 129

Query: 129 SYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVR 188
           S QL+EVFAEAG+VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVR
Sbjct: 130 SSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVR 189

Query: 189 VNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFEDQPGILGA 248
           VNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR+AFE+QPGIL A
Sbjct: 190 VNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSA 249

Query: 249 KVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRLNIAAGQAPTSPAAFER 308
           KVIYDRASG+SRGFGFVSFETAEDAESA+ SMNGVEVEGRPLRLNIAA +APTSPAAF R
Sbjct: 250 KVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSPAAFPR 309

Query: 309 TKSTLDSSELLTSFSA 317
           T++T+DS ELLTS SA
Sbjct: 310 TENTIDSKELLTSISA 321

[Close]

BLAST of MC05g1209 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 305.8 bits (782), Expect = 4.0e-83
Identity = 175/327 (53.52%), Postives = 231/327 (70.64%), Query Frame = 0


Query: 3   ASAVSMAAAASVSSSPPCKKVFNLSLPQQHSTQIPPHFSPKQKPL-------KLLELKIR 62
           +SAV+++AAA+ SS+      FN  L    ++Q+   F+PK   L        +L   IR
Sbjct: 7   SSAVAVSAAATASSA----ATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPLILHSNIR 66

Query: 63  LPNFHPLSFSSASHLYTSPPAFDEEENAEDEELDGKSESQEEEEQTVSASREAGKLYIGN 122
              F   + + AS       A  EEE   +EE D   E  EEE+QT  AS E G+LY+GN
Sbjct: 67  RHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGN 126

Query: 123 LPYAMTSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQI 182
           LPY +TS +L+++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAKEA++MF+ SQI
Sbjct: 127 LPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQI 186

Query: 183 GGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFEDQ 242
           GGRTV+VNFPEVPRGGE EVM  KIR +   +VDSPHK+YAGNLGW LTSQ L++AF DQ
Sbjct: 187 GGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQ 246

Query: 243 PGILGAKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRLNIAAGQ---- 302
           PG+LGAKVIY+R +GRSRGFGF+SFE+AE+ +SA+ +MNGVEVEGR LRLN+A+ +    
Sbjct: 247 PGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREKPT 306

Query: 303 -APTSPAAFERTKSTLDSSELLTSFSA 318
            +P S    E  +++L+S+E+L++ SA
Sbjct: 307 VSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]

BLAST of MC05g1209 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-36
Identity = 108/308 (35.06%), Postives = 169/308 (54.87%), Query Frame = 0


Query: 1   MSASAVSMAAAASVSSSPPCKKVFNLSLPQQHSTQIPPHFSPKQKPLKLLELKIRLPNFH 60
           M+ASA S+A    +SS  P    F +S P   S   P              L  +L N  
Sbjct: 1   MAASASSLA----LSSFNPKSLPFGVSRPASVSLLSP-------------SLSFKL-NSD 60

Query: 61  PLSFSSASHLYTSPPAFDEEENAEDE---ELDGKSESQEEEEQTVSASREAGKLYIGNLP 120
            +SFS A+   +    F        E   E DG ++    +EQ+ SA     KL++GNLP
Sbjct: 61  SVSFSIAAKWNSPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADL---KLFVGNLP 120

Query: 121 YAMTSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG 180
           + + S QL ++F  AG V  V+VIYDK+T RSRGF FVTM+++ E + A + F+G ++ G
Sbjct: 121 FNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDG 180

Query: 181 RTVRVNF-PEVPRGGEKEVMGPKIRSSYNKF-----------VDSPHKIYAGNLGWGLTS 240
           R +RVN  P  P+  +    GP  RSS+                S +++Y GNL WG+  
Sbjct: 181 RPLRVNAGPPPPKREDGFSRGP--RSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDD 240

Query: 241 QSLREAFEDQPGILGAKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRL 294
            +L   F +Q  ++ A+VIYDR SGRS+GFGFV+++++++ ++A+ S++G +++GR +R+
Sbjct: 241 MALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 285

[Close]

BLAST of MC05g1209 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 137.1 bits (344), Expect = 2.4e-32
Identity = 77/233 (33.05%), Postives = 135/233 (57.94%), Query Frame = 0


Query: 63  SFSSASHLYTSPPAFDEEENAEDEELDGKSESQEEEEQTVSA----SREAGKLYIGNLPY 122
           +FS+   L  S  +         E +  K E +E+++   +     +    KLY GNLPY
Sbjct: 35  NFSTPKPLLISSRSCSRRFRVLSETITVKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPY 94

Query: 123 AMTSYQLTEVFAEAGRVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGR 182
            + S  L ++  +      V+V+Y++ T +SRGFAFVTM+ +E+    I   DG++  GR
Sbjct: 95  NVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGR 154

Query: 183 TVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFEDQPGI 242
            ++VNF + P+  ++ +           + ++ HK++ GNL W +TS+SL  AF +   +
Sbjct: 155 ALKVNFADKPKPNKEPL-----------YPETEHKLFVGNLSWTVTSESLAGAFRECGDV 214

Query: 243 LGAKVIYDRASGRSRGFGFVSFETAEDAESAMNSMNGVEVEGRPLRLNIAAGQ 292
           +GA+V++D  +GRSRG+GFV + +  + E+A+ S++G E+EGR +R+N+A G+
Sbjct: 215 VGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256

[Close]

BLAST of MC05g1209 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 136.7 bits (343), Expect = 3.2e-32
Identity = 72/197 (36.55%), Postives = 120/197 (60.91%), Query Frame = 0


Query: 92  SESQEEEEQTVSASREAGKLYIGNLPYAMTSYQLTEVFAEAGRVVSVQVIYDKVTDRSRG 151
           +E++E+      +S  A ++YIGN+P  +T+ QLT++  E G V  VQV+YDK + RSR 
Sbjct: 59  TETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118

Query: 152 FAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSP 211
           F F TM ++E+A   +   +G+ + GR ++VN  E P     ++    ++S  + FVDSP
Sbjct: 119 FGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDL--SVLQSEDSAFVDSP 178

Query: 212 HKIYAGNLGWGLTSQSLREAFEDQPGILGAKVIYDRASGRSRGFGFVSFETAEDAESAMN 271
           +K+Y GNL   +T + L   F ++  ++ AKV     + +S GFGFV+F + ED E+A+ 
Sbjct: 179 YKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIV 238

Query: 272 SMNGVEVEGRPLRLNIA 289
           ++N   +EG+ +R+N A
Sbjct: 239 ALNNSLLEGQKIRVNKA 253

[Close]

BLAST of MC05g1209 vs. TAIR 10
Match: AT3G52150.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 136.7 bits (343), Expect = 3.2e-32
Identity = 72/197 (36.55%), Postives = 120/197 (60.91%), Query Frame = 0


Query: 92  SESQEEEEQTVSASREAGKLYIGNLPYAMTSYQLTEVFAEAGRVVSVQVIYDKVTDRSRG 151
           +E++E+      +S  A ++YIGN+P  +T+ QLT++  E G V  VQV+YDK + RSR 
Sbjct: 59  TETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118

Query: 152 FAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSP 211
           F F TM ++E+A   +   +G+ + GR ++VN  E P     ++    ++S  + FVDSP
Sbjct: 119 FGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDL--SVLQSEDSAFVDSP 178

Query: 212 HKIYAGNLGWGLTSQSLREAFEDQPGILGAKVIYDRASGRSRGFGFVSFETAEDAESAMN 271
           +K+Y GNL   +T + L   F ++  ++ AKV     + +S GFGFV+F + ED E+A+ 
Sbjct: 179 YKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIV 238

Query: 272 SMNGVEVEGRPLRLNIA 289
           ++N   +EG+ +R+N A
Sbjct: 239 ALNNSLLEGQKIRVNKA 253

The following BLAST results are available for this feature:

BLAST of MC05g1209 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39061	5.6e-82	53.52	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19684	3.7e-78	52.49	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q08937	9.0e-40	42.86	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P49314	2.0e-39	42.35	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
Q08935	8.4e-38	37.87	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]

BLAST of MC05g1209 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151379.1	1.57e-213	99.68	RNA-binding protein CP33, chloroplastic [Momordica charantia]	[more]
XP_022983024.1	2.01e-168	80.56	33 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima]	[more]
XP_022934919.1	7.89e-168	80.25	33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata] >XP_022934920.1 33 ...	[more]
KAG6580756.1	3.32e-167	79.82	hypothetical protein SDJN03_20758, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023527627.1	5.25e-167	79.10	33 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of MC05g1209 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCX3	7.58e-214	99.68	RNA-binding protein CP33, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1J651	9.74e-169	80.56	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481...	[more]
A0A6J1F948	3.82e-168	80.25	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A1S3B7N1	7.59e-162	80.06	33 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486688 ...	[more]
A0A5D3DPZ1	1.08e-161	80.06	33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of MC05g1209 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52380.1	4.0e-83	53.52	chloroplast RNA-binding protein 33	[more]
AT2G37220.1	2.1e-36	35.06	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G60000.1	2.4e-32	33.05	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.1	3.2e-32	36.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.2	3.2e-32	36.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 213..286 e-value: 4.7E-25 score: 99.2 coord: 110..183 e-value: 2.3E-27 score: 106.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 111..181 e-value: 1.2E-19 score: 69.9 coord: 214..284 e-value: 3.4E-18 score: 65.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 212..290 score: 18.495615
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 109..187 score: 19.263107
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 72..194 e-value: 5.0E-30 score: 106.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 198..307 e-value: 2.9E-24 score: 87.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..106
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..300
None	No IPR available	PANTHER	PTHR48025:SF11	RNA-BINDING PROTEIN CP33, CHLOROPLASTIC	coord: 1..300
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 110..186 e-value: 1.17716E-33 score: 116.559
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 207..294
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 106..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g1209.1	MC05g1209.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding